Wall clock time and date at job start Wed Apr 1 2020 04:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 120.00686 * 2 1 4 4 H 1.48500 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46924 * 299.99993 * 3 2 1 6 6 H 1.48505 * 109.46852 * 59.99798 * 3 2 1 7 7 C 1.38656 * 119.99507 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00174 * 180.02562 * 7 2 1 9 9 O 1.34829 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.35757 * 116.99989 * 174.96652 * 9 7 2 11 11 C 1.38887 * 120.07024 * 5.32726 * 10 9 7 12 12 C 1.38078 * 119.93629 * 180.02562 * 11 10 9 13 13 C 1.38331 * 120.06345 * 0.02562 * 12 11 10 14 14 C 1.38278 * 120.13951 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.96464 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46859 * 90.00252 * 15 14 13 17 17 C 1.34778 * 119.99640 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99884 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00121 * 179.97438 * 17 16 15 20 20 H 1.09000 * 109.49877 * 59.92964 * 19 17 16 21 21 C 1.53041 * 109.49977 * 179.97438 * 19 17 16 22 22 C 1.53041 * 109.53436 * 181.35031 * 21 19 17 23 23 C 1.53189 * 109.31420 * 298.62837 * 22 21 19 24 24 N 1.46930 * 108.77221 * 54.64072 * 23 22 21 25 25 C 1.34777 * 120.62987 * 126.36664 * 24 23 22 26 26 N 1.34778 * 119.99644 * 174.36769 * 25 24 23 27 27 O 1.21580 * 120.00348 * 354.65053 * 25 24 23 28 28 C 1.46929 * 118.73898 * 306.63963 * 24 23 22 29 29 C 1.38125 * 120.06921 * 0.27373 * 14 13 12 30 30 H 0.97005 * 119.98950 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.03437 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.97066 * 179.97438 * 12 11 10 33 33 H 1.08000 * 119.92721 * 180.02562 * 13 12 11 34 34 H 1.09000 * 109.46860 * 330.00195 * 15 14 13 35 35 H 1.08998 * 109.46878 * 210.00070 * 15 14 13 36 36 H 0.96994 * 120.00317 * 359.97438 * 16 15 14 37 37 H 1.08998 * 109.45582 * 61.32891 * 21 19 17 38 38 H 1.08998 * 109.45741 * 301.36523 * 21 19 17 39 39 H 1.09002 * 109.49232 * 178.68237 * 22 21 19 40 40 H 1.08997 * 109.52598 * 58.60147 * 22 21 19 41 41 H 1.09002 * 109.59109 * 294.85609 * 23 22 21 42 42 H 1.08998 * 109.70792 * 174.49283 * 23 22 21 43 43 H 0.96997 * 120.00603 * 4.95248 * 26 25 24 44 44 H 0.97004 * 119.99791 * 184.94871 * 26 25 24 45 45 H 1.09000 * 109.58635 * 173.14359 * 28 24 23 46 46 H 1.09000 * 109.58754 * 293.57019 * 28 24 23 47 47 H 1.07997 * 120.03560 * 179.70445 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3461 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3345 -2.3685 -0.0005 10 6 2.0697 -3.5047 -0.1072 11 6 3.4570 -3.4393 -0.0986 12 6 4.2021 -4.5967 -0.2078 13 6 3.5681 -5.8204 -0.3262 14 6 2.1870 -5.8889 -0.3351 15 6 1.5004 -7.2242 -0.4636 16 7 1.2755 -7.7880 0.8697 17 6 0.6718 -8.9858 1.0018 18 8 0.3143 -9.5966 0.0168 19 6 0.4410 -9.5661 2.3733 20 1 -0.1856 -8.8893 2.9540 21 6 -0.2564 -10.9222 2.2434 22 6 -0.5214 -11.4968 3.6368 23 6 0.8123 -11.7066 4.3605 24 7 1.5540 -10.4382 4.3620 25 6 2.0127 -9.9123 5.5150 26 7 2.7877 -8.8099 5.4916 27 8 1.7316 -10.4353 6.5760 28 6 1.7810 -9.7510 3.0833 29 6 1.4362 -4.7342 -0.2313 30 1 -0.4849 0.8402 0.0004 31 1 3.9526 -2.4841 -0.0075 32 1 5.2809 -4.5464 -0.2016 33 1 4.1530 -6.7243 -0.4111 34 1 2.1280 -7.9011 -1.0433 35 1 0.5435 -7.0935 -0.9689 36 1 1.5618 -7.2997 1.6574 37 1 0.3814 -11.6063 1.6837 38 1 -1.2024 -10.7950 1.7171 39 1 -1.0391 -12.4516 3.5441 40 1 -1.1389 -10.8020 4.2060 41 1 1.3936 -12.4691 3.8420 42 1 0.6278 -12.0230 5.3871 43 1 2.9564 -8.3533 4.6526 44 1 3.1767 -8.4729 6.3138 45 1 2.2329 -8.7764 3.2674 46 1 2.4427 -10.3508 2.4585 47 1 0.3576 -4.7878 -0.2431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649702106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:07 Heat of formation + Delta-G solvation = -96.885624 kcal Electronic energy + Delta-G solvation = -29828.493707 eV Core-core repulsion = 25589.612557 eV Total energy + Delta-G solvation = -4238.881150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.73162 -40.93411 -40.49269 -38.57268 -38.03258 -35.82100 -35.03834 -34.28310 -33.50806 -32.64744 -31.70363 -30.69925 -27.66548 -26.97846 -26.37758 -24.93416 -23.25051 -22.79304 -22.31423 -21.32522 -20.52439 -19.67563 -19.40639 -18.85526 -18.00352 -17.89701 -17.03092 -16.84424 -16.58440 -16.43795 -16.11012 -16.06615 -15.85478 -15.49812 -15.41228 -15.28424 -14.84772 -14.72062 -14.45593 -14.28070 -14.10990 -13.90816 -13.69485 -13.51768 -13.26022 -13.02424 -12.56152 -12.53026 -12.35750 -12.25082 -12.12611 -12.08541 -11.92506 -11.71049 -11.31720 -11.19955 -10.96830 -10.80592 -10.72127 -10.12532 -9.73558 -9.65249 -9.01198 -8.47126 -6.15227 0.40655 0.73050 1.36089 1.43550 1.51819 1.53703 1.78054 2.08844 2.17090 2.25120 2.86216 3.13407 3.18521 3.42481 3.53627 3.72789 3.76663 3.87307 4.03836 4.11875 4.19447 4.26368 4.32970 4.35989 4.44976 4.51137 4.55807 4.71356 4.72406 4.76346 4.85015 4.88551 5.00895 5.04488 5.12996 5.17353 5.28054 5.33240 5.40226 5.42812 5.64944 5.73052 5.74473 5.81839 6.00540 6.02518 6.19481 6.51998 6.84685 6.98381 7.19229 7.57894 7.79294 8.76212 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002169 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.431061 B =12908.287153 C =13623.419277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.016 2.984 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.409 4.409 8 H 0.104 0.896 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.235 4.235 12 C -0.069 4.069 13 C -0.165 4.165 14 C -0.058 4.058 15 C 0.173 3.827 16 N -0.711 5.711 17 C 0.523 3.477 18 O -0.573 6.573 19 C -0.116 4.116 20 H 0.108 0.892 21 C -0.096 4.096 22 C -0.126 4.126 23 C 0.123 3.877 24 N -0.623 5.623 25 C 0.704 3.296 26 N -0.852 5.852 27 O -0.640 6.640 28 C 0.125 3.875 29 C -0.182 4.182 30 H 0.272 0.728 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.412 0.588 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.410 0.590 44 H 0.420 0.580 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 -20.154 5.715 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.172 1.172 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.485 4.485 8 H 0.121 0.879 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.254 4.254 12 C -0.087 4.087 13 C -0.183 4.183 14 C -0.058 4.058 15 C 0.050 3.950 16 N -0.363 5.363 17 C 0.309 3.691 18 O -0.452 6.452 19 C -0.138 4.138 20 H 0.126 0.874 21 C -0.134 4.134 22 C -0.164 4.164 23 C 0.000 4.000 24 N -0.360 5.360 25 C 0.404 3.596 26 N -0.423 5.423 27 O -0.522 6.522 28 C 0.001 3.999 29 C -0.202 4.202 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.248 0.752 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.243 0.757 44 H 0.253 0.747 45 H 0.121 0.879 46 H 0.108 0.892 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.103 -20.863 5.613 22.743 hybrid contribution 0.087 1.959 0.129 1.966 sum 7.191 -18.904 5.742 21.025 Atomic orbital electron populations 1.70192 1.08052 1.28655 1.49099 1.26558 0.96792 1.02748 0.96024 0.84551 0.78397 0.75021 0.78412 1.17220 1.19666 1.19512 1.21842 0.92509 0.81347 1.52849 0.87878 1.83949 1.36010 1.12614 1.81488 1.19879 0.91665 0.87839 0.94512 1.21373 0.92988 1.00462 1.10607 1.21170 1.00395 0.91160 0.95986 1.21009 0.92934 0.98258 1.06133 1.19444 0.93974 0.92465 0.99936 1.20049 0.99694 0.90368 0.84939 1.46053 1.60505 1.20252 1.09493 1.20753 0.76408 0.80553 0.91358 1.90711 1.51830 1.61358 1.41301 1.21625 0.99815 0.99854 0.92521 0.87393 1.21300 1.00941 0.94047 0.97118 1.21898 0.96801 1.02776 0.94948 1.21625 0.92231 0.83981 1.02167 1.47230 1.58927 1.24871 1.04986 1.16057 0.79039 0.81058 0.83458 1.43058 1.54431 1.29441 1.15347 1.90927 1.65345 1.65283 1.30664 1.21561 0.95016 0.99015 0.84276 1.20234 0.99352 0.90256 1.10371 0.91945 0.86446 0.83415 0.82984 0.89085 0.92163 0.75153 0.90848 0.91705 0.88434 0.92062 0.89872 0.90120 0.75744 0.74704 0.87943 0.89247 0.87687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.32 13.67 21.61 0.30 -55.02 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 3 Si 1.02 41.36 29.55 68.60 2.03 43.39 16 4 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.41 -22.74 9.49 67.92 0.64 -22.09 16 8 H 0.10 5.20 5.20 -2.91 -0.02 5.19 16 9 O -0.23 -13.35 9.76 -22.81 -0.22 -13.58 16 10 C 0.11 5.04 6.65 22.58 0.15 5.19 16 11 C -0.23 -9.02 9.17 22.39 0.21 -8.81 16 12 C -0.07 -1.93 10.04 22.25 0.22 -1.70 16 13 C -0.16 -3.93 9.70 22.30 0.22 -3.72 16 14 C -0.06 -1.58 5.25 -19.88 -0.10 -1.68 16 15 C 0.17 3.91 5.80 85.63 0.50 4.40 16 16 N -0.71 -12.84 5.45 -466.78 -2.55 -15.39 16 17 C 0.52 10.17 7.16 87.66 0.63 10.80 16 18 O -0.57 -15.74 15.98 -3.05 -0.05 -15.79 16 19 C -0.12 -1.60 2.66 -11.60 -0.03 -1.63 16 20 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 21 C -0.10 -1.37 4.46 30.62 0.14 -1.23 16 22 C -0.13 -1.51 6.08 30.67 0.19 -1.33 16 23 C 0.12 1.69 6.44 86.36 0.56 2.24 16 24 N -0.62 -9.02 2.98 -837.72 -2.50 -11.52 16 25 C 0.70 13.52 8.57 179.05 1.53 15.06 16 26 N -0.85 -9.91 8.78 -184.75 -1.62 -11.53 16 27 O -0.64 -18.32 16.60 -3.97 -0.07 -18.38 16 28 C 0.12 1.27 5.50 86.22 0.47 1.75 16 29 C -0.18 -6.88 9.65 22.39 0.22 -6.66 16 30 H 0.27 14.95 8.31 -92.70 -0.77 14.17 16 31 H 0.12 4.68 5.64 -2.91 -0.02 4.66 16 32 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 35 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 36 H 0.41 5.86 8.00 -92.71 -0.74 5.11 16 37 H 0.07 1.07 8.13 -2.39 -0.02 1.06 16 38 H 0.06 1.10 8.07 -2.39 -0.02 1.08 16 39 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.41 6.99 -2.39 -0.02 1.39 16 43 H 0.41 2.56 6.33 -92.71 -0.59 1.98 16 44 H 0.42 4.31 8.93 -92.71 -0.83 3.48 16 45 H 0.10 0.60 5.26 -2.39 -0.01 0.59 16 46 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -80.20 388.09 0.21 -79.99 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -1.11 Total: 28.07 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 6.00 Total: -10.25 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -6.37 Total: -93.46 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.34 Total: -47.74 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -80.20 0.21 -79.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649702106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.894 kcal (2) G-P(sol) polarization free energy of solvation -80.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds