Wall clock time and date at job start Wed Apr 1 2020 04:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86807 * 119.99649 * 2 1 4 4 H 1.48498 * 109.46888 * 239.99970 * 3 2 1 5 5 H 1.48494 * 109.46952 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47034 * 120.00230 * 3 2 1 7 7 C 1.38625 * 120.00513 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00654 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.35788 * 117.00135 * 185.03709 * 9 7 2 11 11 C 1.38901 * 119.99859 * 354.62287 * 10 9 7 12 12 C 1.38012 * 120.00264 * 179.97438 * 11 10 9 13 13 C 1.38906 * 119.99495 * 0.02562 * 12 11 10 14 14 N 1.40024 * 119.99793 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00050 * 35.14336 * 14 13 12 16 16 O 1.21587 * 120.00191 * 355.53953 * 15 14 13 17 17 N 1.34781 * 120.00051 * 175.54476 * 15 14 13 18 18 C 1.47066 * 136.05678 * 359.62552 * 17 15 14 19 19 C 1.53754 * 87.88982 * 152.96396 * 18 17 15 20 20 N 1.46897 * 114.08853 * 139.77885 * 19 18 17 21 21 C 1.47441 * 110.99925 * 91.33365 * 20 19 18 22 22 C 1.54315 * 107.23336 * 123.25891 * 21 20 19 23 23 C 1.55140 * 103.02193 * 22.28212 * 22 21 20 24 24 H 1.09005 * 110.99441 * 82.47494 * 23 22 21 25 25 O 1.42903 * 110.99502 * 206.25799 * 23 22 21 26 26 C 1.47847 * 111.00109 * 212.17535 * 20 19 18 27 27 C 1.47063 * 136.06014 * 179.97438 * 17 15 14 28 28 C 1.38907 * 120.00186 * 0.24969 * 13 12 11 29 29 C 1.38014 * 119.99552 * 359.49510 * 28 13 12 30 30 H 0.96998 * 120.00236 * 359.97438 * 1 2 3 31 31 H 1.08007 * 119.99899 * 359.95234 * 11 10 9 32 32 H 1.07999 * 119.99719 * 180.02562 * 12 11 10 33 33 H 0.97002 * 120.00288 * 215.41229 * 14 13 12 34 34 H 1.09004 * 113.46989 * 267.69876 * 18 17 15 35 35 H 1.09004 * 113.46890 * 38.13942 * 18 17 15 36 36 H 1.09002 * 114.39582 * 272.68003 * 19 18 17 37 37 H 1.08994 * 109.88618 * 242.66191 * 21 20 19 38 38 H 1.08995 * 109.88820 * 3.68628 * 21 20 19 39 39 H 1.09001 * 110.70778 * 140.66743 * 22 21 20 40 40 H 1.08998 * 110.70618 * 263.90257 * 22 21 20 41 41 H 0.96701 * 113.99669 * 298.54427 * 25 23 22 42 42 H 1.09006 * 110.37283 * 332.46962 * 26 20 19 43 43 H 1.09002 * 110.37158 * 94.80558 * 26 20 19 44 44 H 1.09007 * 113.46522 * 321.86758 * 27 17 15 45 45 H 1.09001 * 113.46680 * 92.30137 * 27 17 15 46 46 H 1.08003 * 120.00284 * 179.74979 * 28 13 12 47 47 H 1.08000 * 119.99519 * 180.25264 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6179 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0090 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3350 -2.3680 -0.0016 10 6 2.0705 -3.5046 0.1042 11 6 3.4578 -3.4374 0.0945 12 6 4.2055 -4.5924 0.2025 13 6 3.5704 -5.8222 0.3204 14 7 4.3289 -6.9941 0.4294 15 6 5.4978 -6.9804 1.1002 16 8 5.9336 -5.9343 1.5409 17 7 6.1838 -8.1262 1.2824 18 6 5.9973 -9.5404 0.9245 19 6 7.5273 -9.6896 0.9495 20 7 7.9976 -10.9449 1.5504 21 6 8.1581 -11.9933 0.5262 22 6 9.6189 -12.4853 0.6007 23 6 10.0475 -12.0915 2.0388 24 1 9.7157 -12.8357 2.7628 25 8 11.4614 -11.8998 2.1172 26 6 9.2943 -10.7520 2.2339 27 6 7.4450 -8.5134 1.9320 28 6 2.1830 -5.8899 0.3242 29 6 1.4355 -4.7343 0.2215 30 1 -0.4850 0.8400 0.0004 31 1 3.9515 -2.4812 0.0021 32 1 5.2842 -4.5400 0.1954 33 1 4.0150 -7.8150 0.0188 34 1 5.4919 -10.1206 1.6966 35 1 5.5618 -9.6841 -0.0644 36 1 8.0185 -9.4502 0.0064 37 1 7.4777 -12.8196 0.7316 38 1 7.9530 -11.5811 -0.4617 39 1 9.6690 -13.5657 0.4659 40 1 10.2357 -11.9745 -0.1387 41 1 11.9777 -12.6898 1.9065 42 1 9.8484 -9.9343 1.7729 43 1 9.1385 -10.5553 3.2947 44 1 8.2429 -7.7822 1.8015 45 1 7.3216 -8.8227 2.9700 46 1 1.6893 -6.8465 0.4118 47 1 0.3568 -4.7866 0.2287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649859782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:34 Heat of formation + Delta-G solvation = -9.905439 kcal Electronic energy + Delta-G solvation = -29160.129457 eV Core-core repulsion = 24925.020051 eV Total energy + Delta-G solvation = -4235.109407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.05046 -39.81488 -38.89077 -38.05529 -36.42443 -35.94454 -33.87703 -32.15509 -31.32567 -30.14879 -29.32564 -28.70422 -27.05589 -26.21707 -25.16281 -22.97199 -22.21110 -21.68497 -21.43616 -20.73292 -19.59270 -18.42180 -18.03477 -17.79006 -17.14641 -17.09789 -16.48595 -15.88715 -15.44260 -15.10472 -14.60892 -14.52301 -14.45293 -14.44143 -14.09485 -13.69725 -13.61879 -13.46654 -13.36664 -12.92323 -12.80794 -12.76749 -12.71207 -12.46332 -12.06028 -11.77385 -11.70340 -11.49068 -11.47290 -11.30085 -10.97865 -10.93116 -10.72885 -10.55943 -10.42152 -9.95594 -9.58461 -9.17468 -9.04001 -8.86518 -8.63464 -8.15009 -6.86909 -6.39419 -3.97058 2.17120 2.24703 2.39499 3.07970 3.17990 3.19329 3.21963 3.36182 3.62133 3.81784 3.92566 4.02621 4.06548 4.19173 4.43697 4.52716 4.63534 4.68281 4.78394 4.92913 5.01737 5.05825 5.14246 5.15354 5.17212 5.24695 5.29662 5.31882 5.42068 5.44044 5.53747 5.58246 5.72735 5.80404 6.18857 6.24035 6.24722 6.40487 6.44478 6.78720 6.82776 7.03341 7.04126 7.16553 7.27142 7.42266 7.49651 7.83739 8.03992 8.06366 8.69228 9.06434 9.76098 10.78504 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.001643 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.140315 B =17039.664470 C =17771.252399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.145 3.855 11 C -0.219 4.219 12 C -0.065 4.065 13 C 0.053 3.947 14 N -0.670 5.670 15 C 0.734 3.266 16 O -0.569 6.569 17 N -0.668 5.668 18 C 0.115 3.885 19 C 0.033 3.967 20 N -0.511 5.511 21 C 0.043 3.957 22 C -0.178 4.178 23 C 0.092 3.908 24 H 0.076 0.924 25 O -0.561 6.561 26 C 0.048 3.952 27 C 0.135 3.865 28 C -0.094 4.094 29 C -0.177 4.177 30 H 0.270 0.730 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.397 0.603 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.382 0.618 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.129 -28.717 0.823 33.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.091 3.909 11 C -0.239 4.239 12 C -0.085 4.085 13 C -0.040 4.040 14 N -0.317 5.317 15 C 0.437 3.563 16 O -0.446 6.446 17 N -0.409 5.409 18 C -0.009 4.009 19 C -0.077 4.077 20 N -0.237 5.237 21 C -0.085 4.085 22 C -0.216 4.216 23 C 0.033 3.967 24 H 0.094 0.906 25 O -0.367 6.367 26 C -0.079 4.079 27 C 0.011 3.989 28 C -0.115 4.115 29 C -0.197 4.197 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.231 0.769 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.229 0.771 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.132 0.868 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.323 -27.032 1.634 32.148 hybrid contribution 1.041 -0.064 -0.948 1.410 sum 18.364 -27.097 0.685 32.740 Atomic orbital electron populations 1.70035 1.05912 1.27684 1.46291 1.25265 0.95837 0.98776 0.96608 0.85792 0.78689 0.79805 0.79230 1.19525 1.20320 1.19485 1.21286 0.91825 0.80858 1.52690 0.89098 1.83974 1.34230 1.11373 1.78555 1.19401 0.90266 0.88137 0.93077 1.21109 0.93549 0.98751 1.10479 1.20887 0.99916 0.90709 0.96991 1.17042 0.89467 0.85006 1.12491 1.42190 1.21002 1.12215 1.56294 1.15168 0.80214 0.81844 0.79031 1.90949 1.69044 1.28743 1.55816 1.48370 1.25812 1.05686 1.61047 1.23021 0.95312 0.81258 1.01354 1.23771 0.96633 0.89519 0.97757 1.63690 1.27131 1.06125 1.26750 1.22786 0.95780 0.95328 0.94600 1.23523 0.97490 1.02271 0.98363 1.22944 0.81137 0.97346 0.95300 0.90643 1.86491 1.16814 1.40525 1.92837 1.22903 0.88004 0.96370 1.00659 1.22810 0.85649 0.93210 0.97190 1.20323 0.91289 0.97519 1.02352 1.19968 0.99429 0.89700 1.10596 0.92049 0.85220 0.85618 0.76930 0.88839 0.90763 0.89435 0.89717 0.91897 0.90281 0.90445 0.77063 0.91977 0.88992 0.90375 0.89232 0.86812 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.39 -11.20 9.48 30.88 0.29 -10.91 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 9 O -0.18 -5.18 9.76 -0.03 0.00 -5.18 16 10 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 11 C -0.22 -5.12 9.16 -39.42 -0.36 -5.49 16 12 C -0.06 -1.38 8.69 -39.42 -0.34 -1.72 16 13 C 0.05 0.99 6.30 -83.62 -0.53 0.46 16 14 N -0.67 -10.07 5.34 -14.18 -0.08 -10.14 16 15 C 0.73 11.86 8.64 -86.91 -0.75 11.11 16 16 O -0.57 -11.77 14.56 5.29 0.08 -11.69 16 17 N -0.67 -7.75 3.69 -190.90 -0.70 -8.45 16 18 C 0.11 0.84 8.12 -8.38 -0.07 0.77 16 19 C 0.03 0.22 3.22 -67.47 -0.22 0.00 16 20 N -0.51 -2.97 5.18 -222.92 -1.15 -4.13 16 21 C 0.04 0.19 6.89 -2.84 -0.02 0.17 16 22 C -0.18 -0.67 6.67 -24.91 -0.17 -0.84 16 23 C 0.09 0.45 4.42 -24.59 -0.11 0.34 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 O -0.56 -3.18 13.47 -35.23 -0.47 -3.66 16 26 C 0.05 0.29 5.71 -2.30 -0.01 0.28 16 27 C 0.14 1.25 7.50 -8.53 -0.06 1.18 16 28 C -0.09 -1.71 9.96 -39.42 -0.39 -2.10 16 29 C -0.18 -3.78 9.98 -39.42 -0.39 -4.17 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.13 3.05 5.63 -52.48 -0.30 2.75 16 32 H 0.13 2.69 6.22 -52.49 -0.33 2.36 16 33 H 0.40 4.48 8.54 -40.82 -0.35 4.13 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.60 7.89 -51.93 -0.41 0.19 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.27 7.43 -51.93 -0.39 -0.12 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.38 0.56 9.11 45.56 0.42 0.97 16 42 H 0.06 0.44 7.76 -51.93 -0.40 0.03 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 47 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -36.11 388.94 -10.04 -46.15 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.81 Total: 6.65 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -3.49 Total: -6.55 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -1.18 Total: -47.68 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.40 Total: -20.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.11 -10.04 -46.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649859782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.241 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds