Wall clock time and date at job start Wed Apr 1 2020 04:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86807 * 119.99649 * 2 1 4 4 H 1.48498 * 109.46888 * 239.99970 * 3 2 1 5 5 H 1.48494 * 109.46952 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47034 * 120.00230 * 3 2 1 7 7 C 1.38625 * 120.00513 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00654 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.35788 * 117.00135 * 185.03709 * 9 7 2 11 11 C 1.38901 * 119.99859 * 354.62287 * 10 9 7 12 12 C 1.38012 * 120.00264 * 179.97438 * 11 10 9 13 13 C 1.38906 * 119.99495 * 0.02562 * 12 11 10 14 14 N 1.40024 * 119.99793 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00050 * 35.14336 * 14 13 12 16 16 O 1.21587 * 120.00191 * 355.53953 * 15 14 13 17 17 N 1.34781 * 120.00051 * 175.54476 * 15 14 13 18 18 C 1.47066 * 136.05678 * 359.62552 * 17 15 14 19 19 C 1.53754 * 87.88982 * 152.96396 * 18 17 15 20 20 N 1.46897 * 114.08853 * 139.77885 * 19 18 17 21 21 C 1.47441 * 110.99925 * 91.33365 * 20 19 18 22 22 C 1.54315 * 107.23336 * 123.25891 * 21 20 19 23 23 C 1.55140 * 103.02193 * 22.28212 * 22 21 20 24 24 H 1.09005 * 110.99441 * 82.47494 * 23 22 21 25 25 O 1.42903 * 110.99502 * 206.25799 * 23 22 21 26 26 C 1.47847 * 111.00109 * 212.17535 * 20 19 18 27 27 C 1.47063 * 136.06014 * 179.97438 * 17 15 14 28 28 C 1.38907 * 120.00186 * 0.24969 * 13 12 11 29 29 C 1.38014 * 119.99552 * 359.49510 * 28 13 12 30 30 H 0.96998 * 120.00236 * 359.97438 * 1 2 3 31 31 H 1.08007 * 119.99899 * 359.95234 * 11 10 9 32 32 H 1.07999 * 119.99719 * 180.02562 * 12 11 10 33 33 H 0.97002 * 120.00288 * 215.41229 * 14 13 12 34 34 H 1.09004 * 113.46989 * 267.69876 * 18 17 15 35 35 H 1.09004 * 113.46890 * 38.13942 * 18 17 15 36 36 H 1.09002 * 114.39582 * 272.68003 * 19 18 17 37 37 H 1.08994 * 109.88618 * 242.66191 * 21 20 19 38 38 H 1.08995 * 109.88820 * 3.68628 * 21 20 19 39 39 H 1.09001 * 110.70778 * 140.66743 * 22 21 20 40 40 H 1.08998 * 110.70618 * 263.90257 * 22 21 20 41 41 H 0.96701 * 113.99669 * 298.54427 * 25 23 22 42 42 H 1.09006 * 110.37283 * 332.46962 * 26 20 19 43 43 H 1.09002 * 110.37158 * 94.80558 * 26 20 19 44 44 H 1.09007 * 113.46522 * 321.86758 * 27 17 15 45 45 H 1.09001 * 113.46680 * 92.30137 * 27 17 15 46 46 H 1.08003 * 120.00284 * 179.74979 * 28 13 12 47 47 H 1.08000 * 119.99519 * 180.25264 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6179 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0090 -1.2005 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3350 -2.3680 -0.0016 10 6 2.0705 -3.5046 0.1042 11 6 3.4578 -3.4374 0.0945 12 6 4.2055 -4.5924 0.2025 13 6 3.5704 -5.8222 0.3204 14 7 4.3289 -6.9941 0.4294 15 6 5.4978 -6.9804 1.1002 16 8 5.9336 -5.9343 1.5409 17 7 6.1838 -8.1262 1.2824 18 6 5.9973 -9.5404 0.9245 19 6 7.5273 -9.6896 0.9495 20 7 7.9976 -10.9449 1.5504 21 6 8.1581 -11.9933 0.5262 22 6 9.6189 -12.4853 0.6007 23 6 10.0475 -12.0915 2.0388 24 1 9.7157 -12.8357 2.7628 25 8 11.4614 -11.8998 2.1172 26 6 9.2943 -10.7520 2.2339 27 6 7.4450 -8.5134 1.9320 28 6 2.1830 -5.8899 0.3242 29 6 1.4355 -4.7343 0.2215 30 1 -0.4850 0.8400 0.0004 31 1 3.9515 -2.4812 0.0021 32 1 5.2842 -4.5400 0.1954 33 1 4.0150 -7.8150 0.0188 34 1 5.4919 -10.1206 1.6966 35 1 5.5618 -9.6841 -0.0644 36 1 8.0185 -9.4502 0.0064 37 1 7.4777 -12.8196 0.7316 38 1 7.9530 -11.5811 -0.4617 39 1 9.6690 -13.5657 0.4659 40 1 10.2357 -11.9745 -0.1387 41 1 11.9777 -12.6898 1.9065 42 1 9.8484 -9.9343 1.7729 43 1 9.1385 -10.5553 3.2947 44 1 8.2429 -7.7822 1.8015 45 1 7.3216 -8.8227 2.9700 46 1 1.6893 -6.8465 0.4118 47 1 0.3568 -4.7866 0.2287 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649859782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:33 Heat of formation + Delta-G solvation = -39.197137 kcal Electronic energy + Delta-G solvation = -29161.399641 eV Core-core repulsion = 24925.020051 eV Total energy + Delta-G solvation = -4236.379590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98145 -40.98401 -40.19956 -39.06661 -37.97186 -36.50399 -35.39804 -34.17048 -32.03847 -31.82565 -30.04618 -29.61532 -28.27632 -27.18299 -26.87403 -24.09627 -23.58772 -22.73017 -22.04643 -21.57407 -20.70800 -19.95326 -19.33998 -18.74221 -18.41134 -18.09609 -17.63005 -16.67753 -16.65023 -16.25547 -16.14721 -15.67542 -15.53399 -15.29734 -15.19676 -15.09996 -14.86449 -14.63610 -14.31798 -14.14488 -14.03383 -13.62158 -13.43621 -13.42240 -13.29970 -13.22769 -13.13858 -12.70816 -12.48544 -12.44718 -12.17012 -12.15388 -11.71767 -11.51004 -11.45742 -11.30519 -10.95750 -10.89968 -10.58372 -9.85402 -9.84085 -9.45408 -8.58656 -8.46376 -6.13233 0.52108 0.57775 1.26970 1.34478 1.44484 1.50143 2.01271 2.18188 2.60986 2.82332 2.92398 3.09610 3.15582 3.43054 3.52043 3.68043 3.80526 3.91273 4.06221 4.09968 4.12231 4.22070 4.32156 4.33628 4.46088 4.48202 4.56737 4.58495 4.63171 4.65891 4.66882 4.79793 4.86040 4.93183 4.99832 5.07725 5.07960 5.12629 5.24777 5.34939 5.45015 5.59285 5.70214 5.81108 5.96040 6.02325 6.15451 6.17256 6.86084 6.89488 6.98037 7.45844 7.77131 8.75874 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028914 B = 0.001643 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.140315 B =17039.664470 C =17771.252399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.019 4.019 3 Si 1.015 2.985 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.415 4.415 8 H 0.096 0.904 9 O -0.226 6.226 10 C 0.106 3.894 11 C -0.228 4.228 12 C -0.078 4.078 13 C 0.080 3.920 14 N -0.657 5.657 15 C 0.728 3.272 16 O -0.623 6.623 17 N -0.668 5.668 18 C 0.119 3.881 19 C 0.050 3.950 20 N -0.510 5.510 21 C 0.040 3.960 22 C -0.170 4.170 23 C 0.093 3.907 24 H 0.085 0.915 25 O -0.583 6.583 26 C 0.043 3.957 27 C 0.127 3.873 28 C -0.076 4.076 29 C -0.176 4.176 30 H 0.273 0.727 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.420 0.580 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.398 0.602 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.168 0.832 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.257 -32.458 0.601 37.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.217 4.217 3 Si 0.834 3.166 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.113 0.887 9 O -0.133 6.133 10 C 0.055 3.945 11 C -0.248 4.248 12 C -0.098 4.098 13 C -0.014 4.014 14 N -0.306 5.306 15 C 0.432 3.568 16 O -0.503 6.503 17 N -0.408 5.408 18 C -0.003 4.003 19 C -0.059 4.059 20 N -0.236 5.236 21 C -0.087 4.087 22 C -0.209 4.209 23 C 0.033 3.967 24 H 0.102 0.898 25 O -0.391 6.391 26 C -0.084 4.084 27 C 0.003 3.997 28 C -0.097 4.097 29 C -0.196 4.196 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.259 0.741 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.249 0.751 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.185 0.815 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.503 -30.932 1.395 36.071 hybrid contribution 0.903 0.654 -0.817 1.382 sum 19.406 -30.277 0.578 35.967 Atomic orbital electron populations 1.70165 1.07767 1.28829 1.48682 1.26500 0.96874 1.02464 0.95857 0.84704 0.77472 0.74641 0.79751 1.18253 1.19162 1.18681 1.21719 0.92361 0.81659 1.53406 0.88689 1.83935 1.35509 1.12349 1.81508 1.19922 0.90987 0.88451 0.95119 1.21086 0.93377 0.99177 1.11114 1.20925 0.99700 0.91329 0.97865 1.17161 0.90219 0.85444 1.08621 1.41959 1.20478 1.11822 1.56347 1.15340 0.80264 0.82395 0.78837 1.90922 1.70310 1.31274 1.57786 1.48379 1.25887 1.06289 1.60206 1.23276 0.95797 0.78158 1.03076 1.23550 0.96536 0.89028 0.96814 1.63704 1.26972 1.05689 1.27197 1.22892 0.96390 0.95082 0.94347 1.23471 0.96857 1.03307 0.97249 1.22954 0.80788 0.96626 0.96294 0.89753 1.86446 1.17442 1.42162 1.93037 1.22917 0.88269 0.96862 1.00385 1.23038 0.84355 0.93956 0.98313 1.20736 0.90703 0.98511 0.99701 1.20315 1.00392 0.89382 1.09514 0.91782 0.86620 0.86015 0.74147 0.87452 0.88343 0.89254 0.88504 0.91409 0.88458 0.91266 0.75108 0.93435 0.89312 0.91669 0.88521 0.81500 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.99 13.67 21.61 0.30 -56.70 16 2 C -0.02 -1.12 5.49 84.82 0.47 -0.65 16 3 Si 1.01 44.60 29.55 68.60 2.03 46.63 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.42 -25.14 9.48 67.91 0.64 -24.50 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -13.95 9.76 -23.02 -0.22 -14.17 16 10 C 0.11 5.47 6.65 22.59 0.15 5.62 16 11 C -0.23 -11.09 9.16 22.37 0.20 -10.88 16 12 C -0.08 -3.32 8.69 22.38 0.19 -3.13 16 13 C 0.08 2.81 6.30 38.15 0.24 3.05 16 14 N -0.66 -17.64 5.34 -317.05 -1.69 -19.33 16 15 C 0.73 22.22 8.64 179.05 1.55 23.77 16 16 O -0.62 -25.68 14.56 -3.99 -0.06 -25.74 16 17 N -0.67 -13.90 3.69 -876.15 -3.23 -17.13 16 18 C 0.12 1.27 8.12 83.26 0.68 1.95 16 19 C 0.05 0.55 3.22 45.47 0.15 0.69 16 20 N -0.51 -4.53 5.18 -859.18 -4.45 -8.98 16 21 C 0.04 0.22 6.89 86.65 0.60 0.81 16 22 C -0.17 -0.82 6.67 31.77 0.21 -0.61 16 23 C 0.09 0.72 4.42 31.98 0.14 0.86 16 24 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 25 O -0.58 -5.75 13.47 -148.98 -2.01 -7.76 16 26 C 0.04 0.46 5.71 86.77 0.50 0.95 16 27 C 0.13 2.15 7.50 83.17 0.62 2.77 16 28 C -0.08 -2.52 9.96 22.38 0.22 -2.30 16 29 C -0.18 -7.41 9.98 22.37 0.22 -7.18 16 30 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.12 5.81 5.63 -2.91 -0.02 5.80 16 32 H 0.12 5.32 6.22 -2.91 -0.02 5.30 16 33 H 0.42 7.46 8.54 -92.71 -0.79 6.66 16 34 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.09 0.99 7.89 -2.39 -0.02 0.97 16 37 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.07 0.33 7.43 -2.39 -0.02 0.31 16 39 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.40 0.49 9.11 -74.06 -0.67 -0.19 16 42 H 0.05 0.64 7.76 -2.38 -0.02 0.62 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 46 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 47 H 0.13 5.21 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -84.38 388.94 -3.00 -87.39 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.44 Total: 24.55 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 6.79 Total: -8.76 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -9.08 Total: -102.14 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -2.29 Total: -47.67 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -84.38 -3.00 -87.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649859782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.188 kcal (2) G-P(sol) polarization free energy of solvation -84.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds