Wall clock time and date at job start Wed Apr 1 2020 04:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00431 * 2 1 4 4 H 1.48498 * 109.47434 * 269.99692 * 3 2 1 5 5 H 1.48505 * 109.47038 * 29.99591 * 3 2 1 6 6 H 1.48503 * 109.47349 * 149.99202 * 3 2 1 7 7 C 1.37880 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99829 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00273 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46971 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.46819 * 179.97438 * 10 9 7 12 12 C 1.35986 * 116.99772 * 179.97438 * 11 10 9 13 13 C 1.38777 * 120.49753 * 0.02648 * 12 11 10 14 14 C 1.38788 * 118.44896 * 179.97438 * 13 12 11 15 15 C 1.38069 * 119.35527 * 359.97438 * 14 13 12 16 16 N 1.31972 * 120.95520 * 359.72858 * 15 14 13 17 17 C 1.32278 * 121.68173 * 0.56264 * 16 15 14 18 18 N 1.39582 * 119.72287 * 179.71072 * 17 16 15 19 19 C 1.34784 * 120.00191 * 359.72948 * 18 17 16 20 20 O 1.21583 * 119.99453 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99935 * 179.72642 * 19 18 17 22 22 C 1.47264 * 136.21017 * 359.62821 * 21 19 18 23 23 C 1.53962 * 88.11584 * 153.84109 * 22 21 19 24 24 C 1.46005 * 136.21027 * 180.02562 * 21 19 18 25 25 C 1.53606 * 115.71914 * 88.18150 * 24 21 19 26 26 C 1.54717 * 103.69889 * 230.80960 * 25 24 21 27 27 O 1.44503 * 104.85811 * 23.80611 * 26 25 24 28 28 C 1.44656 * 105.45431 * 320.09266 * 27 26 25 29 29 H 0.97000 * 120.00081 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46867 * 60.00111 * 9 7 2 31 31 H 1.09000 * 109.46563 * 299.99597 * 9 7 2 32 32 H 1.09005 * 109.46933 * 60.00089 * 10 9 7 33 33 H 1.08995 * 109.46899 * 299.99887 * 10 9 7 34 34 H 1.07996 * 120.77507 * 359.95220 * 13 12 11 35 35 H 1.08000 * 120.32447 * 180.02562 * 14 13 12 36 36 H 1.08002 * 119.52613 * 179.97438 * 15 14 13 37 37 H 0.97005 * 119.99962 * 179.72897 * 18 17 16 38 38 H 1.09004 * 113.42703 * 268.62565 * 22 21 19 39 39 H 1.09003 * 113.43419 * 38.94401 * 22 21 19 40 40 H 1.08998 * 114.50526 * 271.88167 * 23 22 21 41 41 H 1.08999 * 114.15049 * 138.87877 * 23 22 21 42 42 H 1.09002 * 110.58553 * 349.36417 * 25 24 21 43 43 H 1.09005 * 110.58310 * 112.25703 * 25 24 21 44 44 H 1.08998 * 110.36195 * 142.65470 * 26 25 24 45 45 H 1.08999 * 110.35903 * 264.85599 * 26 25 24 46 46 H 1.09003 * 110.41089 * 280.83286 * 28 27 26 47 47 H 1.08998 * 110.41368 * 158.38258 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 8 5.4504 -2.6368 0.0009 12 6 6.0677 -3.8485 0.0014 13 6 5.3219 -5.0188 0.0013 14 6 5.9957 -6.2322 0.0012 15 6 7.3764 -6.2397 0.0007 16 7 8.0613 -5.1116 -0.0051 17 6 7.4598 -3.9336 0.0004 18 7 8.2246 -2.7660 0.0001 19 6 9.5703 -2.8418 -0.0004 20 8 10.1179 -3.9273 -0.0001 21 7 10.3087 -1.7144 -0.0063 22 6 10.0387 -0.2668 -0.0198 23 6 11.4025 -0.0575 0.6634 24 6 11.7315 -1.3863 -0.0093 25 6 12.3895 -1.2856 -1.3936 26 6 13.6395 -2.1892 -1.2717 27 8 13.3246 -3.1158 -0.2085 28 6 12.6358 -2.3327 0.7939 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6802 0.8911 31 1 3.8751 -0.6806 -0.8889 32 1 3.6583 -3.1503 -0.8893 33 1 3.6577 -3.1507 0.8907 34 1 4.2424 -4.9862 0.0016 35 1 5.4454 -7.1615 0.0007 36 1 7.9035 -7.1823 0.0010 37 1 7.7876 -1.8999 0.0002 38 1 9.9876 0.1553 -1.0235 39 1 9.1916 0.0220 0.6024 40 1 11.3741 -0.1009 1.7522 41 1 11.9682 0.7913 0.2793 42 1 11.7182 -1.6624 -2.1653 43 1 12.6798 -0.2567 -1.6060 44 1 13.8116 -2.7263 -2.2044 45 1 14.5141 -1.5933 -1.0110 46 1 13.3501 -1.7628 1.3882 47 1 12.0361 -2.9787 1.4351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660923179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:35 Heat of formation + Delta-G solvation = -12.300253 kcal Electronic energy + Delta-G solvation = -30552.308418 eV Core-core repulsion = 26317.095164 eV Total energy + Delta-G solvation = -4235.213254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59273 -40.67382 -38.87520 -37.88582 -37.37781 -34.73596 -33.45718 -31.81691 -31.36434 -30.83187 -29.98072 -28.73172 -28.67424 -25.64590 -23.97340 -23.27505 -23.18352 -22.80781 -21.74691 -20.61780 -19.39815 -18.33066 -17.87215 -17.52039 -16.77696 -16.61179 -16.28387 -16.04109 -15.80014 -15.68482 -15.39990 -14.85606 -14.63995 -14.42267 -14.27634 -14.01078 -13.76175 -13.59119 -13.13575 -13.05611 -12.85954 -12.57743 -12.53116 -12.21772 -12.05709 -11.98865 -11.82931 -11.33111 -11.25717 -11.00468 -10.89640 -10.74479 -10.40663 -10.24133 -10.16541 -10.01745 -9.95435 -9.46218 -9.25432 -9.08563 -8.89807 -8.71562 -7.67909 -6.22119 -4.23802 1.24491 1.43349 2.08770 3.13399 3.19852 3.27693 3.30356 3.41740 3.44047 3.63416 3.97667 4.01416 4.20195 4.29743 4.43216 4.50646 4.57349 4.65775 4.83178 4.85326 4.93791 4.94837 5.06959 5.11555 5.14012 5.20513 5.28587 5.30418 5.37358 5.44047 5.46578 5.54901 5.69087 5.75676 5.78308 5.79426 6.04226 6.16613 6.29929 6.38653 6.54275 6.57172 6.89446 6.96321 7.09885 7.49370 7.63334 7.73878 8.19519 8.29124 8.60672 8.78276 9.37407 10.90360 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.002824 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.554431 B = 9913.404885 C =12154.929295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.007 4.007 10 C 0.074 3.926 11 O -0.321 6.321 12 C 0.063 3.937 13 C -0.144 4.144 14 C -0.163 4.163 15 C 0.080 3.920 16 N -0.442 5.442 17 C 0.348 3.652 18 N -0.659 5.659 19 C 0.724 3.276 20 O -0.517 6.517 21 N -0.654 5.654 22 C 0.094 3.906 23 C -0.138 4.138 24 C 0.151 3.849 25 C -0.156 4.156 26 C 0.046 3.954 27 O -0.362 6.362 28 C 0.049 3.951 29 H 0.267 0.733 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.418 0.582 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.597 -1.500 -0.243 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.044 4.044 10 C 0.000 4.000 11 O -0.234 6.234 12 C 0.011 3.989 13 C -0.170 4.170 14 C -0.184 4.184 15 C -0.077 4.077 16 N -0.157 5.157 17 C 0.114 3.886 18 N -0.308 5.308 19 C 0.427 3.573 20 O -0.387 6.387 21 N -0.395 5.395 22 C -0.029 4.029 23 C -0.176 4.176 24 C 0.064 3.936 25 C -0.195 4.195 26 C -0.031 4.031 27 O -0.280 6.280 28 C -0.028 4.028 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.255 0.745 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 25.775 -2.438 -0.235 25.891 hybrid contribution -1.340 1.438 -0.187 1.974 sum 24.435 -1.001 -0.422 24.459 Atomic orbital electron populations 1.69887 1.06287 1.27299 1.49867 1.24940 0.94769 0.99221 0.94078 0.86748 0.80386 0.83321 0.78715 1.20062 1.21136 1.18835 1.20815 0.88228 0.94985 1.52647 0.90713 1.19576 0.97037 0.90005 0.97816 1.23129 0.74027 1.02202 1.00681 1.86042 1.24515 1.24843 1.88034 1.19473 0.90786 0.87005 1.01634 1.21606 1.01201 0.91326 1.02882 1.21900 0.95511 0.98238 1.02742 1.22442 0.91091 0.95578 0.98597 1.67650 1.38297 0.96215 1.13514 1.17477 0.84065 0.86595 1.00436 1.42430 1.04721 1.07951 1.75695 1.15287 0.80660 0.82814 0.78524 1.91081 1.69870 1.24419 1.53333 1.48692 1.07485 1.04673 1.78638 1.23093 0.98709 0.80033 1.01092 1.23381 0.96910 0.95904 1.01409 1.22390 0.82083 0.93540 0.95565 1.23117 0.98138 1.01512 0.96763 1.23425 0.95826 0.91624 0.92266 1.89278 1.76800 1.31854 1.30108 1.23490 0.93746 0.93917 0.91677 0.92363 0.95427 0.95877 0.92362 0.92316 0.83588 0.84676 0.82564 0.74541 0.89558 0.89909 0.88020 0.88609 0.89697 0.89139 0.89065 0.92068 0.91112 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 7 C -0.53 -14.23 9.66 -34.44 -0.33 -14.56 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.15 4.41 -27.88 -0.12 -0.28 16 10 C 0.07 1.39 4.70 37.16 0.17 1.57 16 11 O -0.32 -5.68 9.39 -19.70 -0.18 -5.86 16 12 C 0.06 1.03 6.72 -38.92 -0.26 0.77 16 13 C -0.14 -2.09 9.14 -39.18 -0.36 -2.45 16 14 C -0.16 -2.05 10.10 -39.44 -0.40 -2.45 16 15 C 0.08 1.11 11.17 -17.55 -0.20 0.92 16 16 N -0.44 -7.66 7.87 -12.22 -0.10 -7.76 16 17 C 0.35 5.89 7.45 -154.43 -1.15 4.74 16 18 N -0.66 -10.07 5.40 -15.67 -0.08 -10.16 16 19 C 0.72 11.34 8.62 -86.91 -0.75 10.59 16 20 O -0.52 -9.99 14.47 5.29 0.08 -9.92 16 21 N -0.65 -7.50 3.47 -179.72 -0.62 -8.13 16 22 C 0.09 0.70 8.08 -10.04 -0.08 0.62 16 23 C -0.14 -0.78 7.76 -26.47 -0.21 -0.98 16 24 C 0.15 1.36 1.41 -138.64 -0.20 1.16 16 25 C -0.16 -1.21 6.44 -25.51 -0.16 -1.38 16 26 C 0.05 0.39 7.66 38.06 0.29 0.68 16 27 O -0.36 -4.62 11.66 -35.23 -0.41 -5.03 16 28 C 0.05 0.52 6.72 37.46 0.25 0.77 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 32 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 33 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 34 H 0.15 1.97 6.44 -52.49 -0.34 1.63 16 35 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.42 5.65 7.77 -40.82 -0.32 5.33 16 38 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.31 7.91 -51.93 -0.41 -0.10 16 42 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 43 H 0.09 0.43 7.79 -51.93 -0.40 0.03 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 47 H 0.10 1.31 7.54 -51.93 -0.39 0.92 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -35.42 386.88 -9.80 -45.21 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.82 Total: 3.94 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -3.59 Total: 1.63 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.03 Total: -51.68 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.52 Total: -20.81 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.42 -9.80 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660923179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.914 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds