Wall clock time and date at job start Wed Apr 1 2020 04:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00431 * 2 1 4 4 H 1.48498 * 109.47434 * 269.99692 * 3 2 1 5 5 H 1.48505 * 109.47038 * 29.99591 * 3 2 1 6 6 H 1.48503 * 109.47349 * 149.99202 * 3 2 1 7 7 C 1.37880 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99829 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00273 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46971 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.46819 * 179.97438 * 10 9 7 12 12 C 1.35986 * 116.99772 * 179.97438 * 11 10 9 13 13 C 1.38777 * 120.49753 * 0.02648 * 12 11 10 14 14 C 1.38788 * 118.44896 * 179.97438 * 13 12 11 15 15 C 1.38069 * 119.35527 * 359.97438 * 14 13 12 16 16 N 1.31972 * 120.95520 * 359.72858 * 15 14 13 17 17 C 1.32278 * 121.68173 * 0.56264 * 16 15 14 18 18 N 1.39582 * 119.72287 * 179.71072 * 17 16 15 19 19 C 1.34784 * 120.00191 * 359.72948 * 18 17 16 20 20 O 1.21583 * 119.99453 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99935 * 179.72642 * 19 18 17 22 22 C 1.47264 * 136.21017 * 359.62821 * 21 19 18 23 23 C 1.53962 * 88.11584 * 153.84109 * 22 21 19 24 24 C 1.46005 * 136.21027 * 180.02562 * 21 19 18 25 25 C 1.53606 * 115.71914 * 88.18150 * 24 21 19 26 26 C 1.54717 * 103.69889 * 230.80960 * 25 24 21 27 27 O 1.44503 * 104.85811 * 23.80611 * 26 25 24 28 28 C 1.44656 * 105.45431 * 320.09266 * 27 26 25 29 29 H 0.97000 * 120.00081 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.46867 * 60.00111 * 9 7 2 31 31 H 1.09000 * 109.46563 * 299.99597 * 9 7 2 32 32 H 1.09005 * 109.46933 * 60.00089 * 10 9 7 33 33 H 1.08995 * 109.46899 * 299.99887 * 10 9 7 34 34 H 1.07996 * 120.77507 * 359.95220 * 13 12 11 35 35 H 1.08000 * 120.32447 * 180.02562 * 14 13 12 36 36 H 1.08002 * 119.52613 * 179.97438 * 15 14 13 37 37 H 0.97005 * 119.99962 * 179.72897 * 18 17 16 38 38 H 1.09004 * 113.42703 * 268.62565 * 22 21 19 39 39 H 1.09003 * 113.43419 * 38.94401 * 22 21 19 40 40 H 1.08998 * 114.50526 * 271.88167 * 23 22 21 41 41 H 1.08999 * 114.15049 * 138.87877 * 23 22 21 42 42 H 1.09002 * 110.58553 * 349.36417 * 25 24 21 43 43 H 1.09005 * 110.58310 * 112.25703 * 25 24 21 44 44 H 1.08998 * 110.36195 * 142.65470 * 26 25 24 45 45 H 1.08999 * 110.35903 * 264.85599 * 26 25 24 46 46 H 1.09003 * 110.41089 * 280.83286 * 28 27 26 47 47 H 1.08998 * 110.41368 * 158.38258 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 8 5.4504 -2.6368 0.0009 12 6 6.0677 -3.8485 0.0014 13 6 5.3219 -5.0188 0.0013 14 6 5.9957 -6.2322 0.0012 15 6 7.3764 -6.2397 0.0007 16 7 8.0613 -5.1116 -0.0051 17 6 7.4598 -3.9336 0.0004 18 7 8.2246 -2.7660 0.0001 19 6 9.5703 -2.8418 -0.0004 20 8 10.1179 -3.9273 -0.0001 21 7 10.3087 -1.7144 -0.0063 22 6 10.0387 -0.2668 -0.0198 23 6 11.4025 -0.0575 0.6634 24 6 11.7315 -1.3863 -0.0093 25 6 12.3895 -1.2856 -1.3936 26 6 13.6395 -2.1892 -1.2717 27 8 13.3246 -3.1158 -0.2085 28 6 12.6358 -2.3327 0.7939 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6802 0.8911 31 1 3.8751 -0.6806 -0.8889 32 1 3.6583 -3.1503 -0.8893 33 1 3.6577 -3.1507 0.8907 34 1 4.2424 -4.9862 0.0016 35 1 5.4454 -7.1615 0.0007 36 1 7.9035 -7.1823 0.0010 37 1 7.7876 -1.8999 0.0002 38 1 9.9876 0.1553 -1.0235 39 1 9.1916 0.0220 0.6024 40 1 11.3741 -0.1009 1.7522 41 1 11.9682 0.7913 0.2793 42 1 11.7182 -1.6624 -2.1653 43 1 12.6798 -0.2567 -1.6060 44 1 13.8116 -2.7263 -2.2044 45 1 14.5141 -1.5933 -1.0110 46 1 13.3501 -1.7628 1.3882 47 1 12.0361 -2.9787 1.4351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660923179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:35 Heat of formation + Delta-G solvation = -37.003511 kcal Electronic energy + Delta-G solvation = -30553.379631 eV Core-core repulsion = 26317.095164 eV Total energy + Delta-G solvation = -4236.284467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.44058 -41.75949 -39.98589 -39.10982 -38.23739 -35.94093 -35.39586 -33.09858 -32.72487 -31.94436 -30.94012 -29.75470 -29.38124 -27.32294 -25.13756 -24.15742 -23.89277 -23.82114 -22.88441 -22.12339 -20.44998 -19.59504 -19.07130 -18.59846 -18.26727 -17.52228 -17.38875 -17.24063 -16.89013 -16.47848 -16.44153 -16.27453 -15.81587 -15.61209 -15.30243 -15.26040 -14.78891 -14.73150 -14.57318 -14.13982 -13.84721 -13.75424 -13.51874 -13.35466 -13.14598 -12.86548 -12.71465 -12.56963 -12.51935 -12.20158 -11.96621 -11.87147 -11.82551 -11.65736 -11.57568 -11.48072 -11.37078 -10.80511 -10.76672 -10.45927 -10.24888 -9.77784 -8.85964 -8.33325 -6.40500 0.10756 0.25992 1.15208 1.38003 1.39638 1.51445 2.03693 2.06949 2.34605 2.55800 2.86212 2.92351 3.02137 3.39343 3.48903 3.53900 3.76029 3.82039 3.85514 3.93505 4.03505 4.09088 4.22836 4.22975 4.28077 4.36201 4.37723 4.43693 4.60279 4.65790 4.67059 4.73242 4.78062 4.88956 4.93101 4.95297 5.03287 5.05816 5.12095 5.22825 5.24943 5.31585 5.47921 5.58089 5.85265 5.93980 6.16489 6.27240 6.66029 6.74332 7.07035 7.24762 7.51099 8.82283 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.002824 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.554431 B = 9913.404885 C =12154.929295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.041 0.959 9 C -0.004 4.004 10 C 0.086 3.914 11 O -0.325 6.325 12 C 0.042 3.958 13 C -0.146 4.146 14 C -0.147 4.147 15 C 0.076 3.924 16 N -0.476 5.476 17 C 0.331 3.669 18 N -0.657 5.657 19 C 0.717 3.283 20 O -0.567 6.567 21 N -0.661 5.661 22 C 0.087 3.913 23 C -0.113 4.113 24 C 0.139 3.861 25 C -0.149 4.149 26 C 0.039 3.961 27 O -0.406 6.406 28 C 0.047 3.953 29 H 0.269 0.731 30 H 0.031 0.969 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.423 0.577 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.135 0.865 42 H 0.060 0.940 43 H 0.132 0.868 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.623 0.400 -0.340 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.574 4.574 8 H 0.060 0.940 9 C -0.041 4.041 10 C 0.011 3.989 11 O -0.238 6.238 12 C -0.009 4.009 13 C -0.172 4.172 14 C -0.168 4.168 15 C -0.081 4.081 16 N -0.191 5.191 17 C 0.098 3.902 18 N -0.307 5.307 19 C 0.419 3.581 20 O -0.441 6.441 21 N -0.401 5.401 22 C -0.034 4.034 23 C -0.150 4.150 24 C 0.053 3.947 25 C -0.187 4.187 26 C -0.037 4.037 27 O -0.325 6.325 28 C -0.030 4.030 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.174 0.826 35 H 0.192 0.808 36 H 0.200 0.800 37 H 0.261 0.739 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.153 0.847 42 H 0.079 0.921 43 H 0.150 0.850 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.120 0.880 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 27.831 -0.494 -0.335 27.837 hybrid contribution -1.945 0.680 -0.164 2.067 sum 25.886 0.185 -0.499 25.891 Atomic orbital electron populations 1.70034 1.08255 1.28480 1.51613 1.25917 0.95609 1.03479 0.93707 0.85662 0.79613 0.78101 0.79349 1.19032 1.20953 1.16717 1.21116 0.90633 0.93827 1.51854 0.94031 1.19423 0.94175 0.92488 0.98042 1.22771 0.75072 0.99961 1.01071 1.85969 1.23332 1.25797 1.88741 1.19568 0.90784 0.87083 1.03477 1.21880 1.01729 0.91472 1.02142 1.22259 0.95043 0.99065 1.00461 1.23025 0.92056 0.95714 0.97304 1.67694 1.39603 0.97175 1.14653 1.17666 0.84408 0.87066 1.01035 1.42436 1.04793 1.07870 1.75603 1.15547 0.80708 0.83478 0.78319 1.91024 1.70670 1.26701 1.55675 1.48921 1.08814 1.05317 1.77054 1.23432 1.00222 0.77210 1.02553 1.23398 0.95304 0.94792 1.01510 1.22816 0.80555 0.94780 0.96546 1.23126 0.97012 1.03480 0.95117 1.23674 0.97346 0.91522 0.91206 1.89222 1.77290 1.34327 1.31663 1.23555 0.94376 0.93584 0.91516 0.92196 0.95093 0.95257 0.92042 0.92003 0.82625 0.80775 0.79996 0.73927 0.87845 0.89486 0.87515 0.84658 0.92085 0.85033 0.89441 0.89000 0.87962 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.71 13.96 21.45 0.30 -56.41 16 2 C 0.01 0.61 5.47 84.66 0.46 1.07 16 3 Si 0.95 41.63 27.47 68.60 1.88 43.52 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 7 C -0.54 -29.15 9.66 25.60 0.25 -28.90 16 8 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 9 C 0.00 -0.17 4.41 29.85 0.13 -0.04 16 10 C 0.09 3.20 4.70 71.98 0.34 3.53 16 11 O -0.32 -11.31 9.39 -93.40 -0.88 -12.19 16 12 C 0.04 1.37 6.72 22.70 0.15 1.53 16 13 C -0.15 -4.07 9.14 22.53 0.21 -3.86 16 14 C -0.15 -3.43 10.10 22.36 0.23 -3.20 16 15 C 0.08 2.05 11.17 84.63 0.95 2.99 16 16 N -0.48 -16.79 7.87 -192.58 -1.52 -18.31 16 17 C 0.33 11.40 7.45 132.98 0.99 12.39 16 18 N -0.66 -20.58 5.40 -321.76 -1.74 -22.32 16 19 C 0.72 23.23 8.62 179.05 1.54 24.77 16 20 O -0.57 -23.17 14.47 -3.98 -0.06 -23.22 16 21 N -0.66 -14.91 3.47 -840.76 -2.91 -17.82 16 22 C 0.09 1.08 8.08 82.07 0.66 1.75 16 23 C -0.11 -0.85 7.76 30.76 0.24 -0.61 16 24 C 0.14 2.28 1.41 -0.55 0.00 2.27 16 25 C -0.15 -1.99 6.44 31.38 0.20 -1.79 16 26 C 0.04 0.61 7.66 72.57 0.56 1.17 16 27 O -0.41 -10.54 11.66 -148.98 -1.74 -12.28 16 28 C 0.05 0.97 6.72 72.18 0.49 1.46 16 29 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 31 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 32 H 0.06 2.23 7.70 -2.38 -0.02 2.21 16 33 H 0.06 2.24 7.70 -2.39 -0.02 2.22 16 34 H 0.16 3.99 6.44 -2.91 -0.02 3.97 16 35 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.42 11.54 7.77 -92.70 -0.72 10.82 16 38 H 0.10 0.96 8.12 -2.38 -0.02 0.94 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.14 0.06 7.91 -2.39 -0.02 0.04 16 42 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 43 H 0.13 0.64 7.79 -2.38 -0.02 0.62 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.10 1.36 8.11 -2.39 -0.02 1.34 16 47 H 0.06 1.77 7.54 -2.39 -0.02 1.76 16 Total: -1.00 -82.04 386.88 0.96 -81.09 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.22 Total: 23.41 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 7.39 Total: 14.52 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -5.87 Total: -114.85 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -2.67 Total: -47.69 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.88 Total: 43.52 kcal Total: -82.04 0.96 -81.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660923179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.084 kcal (2) G-P(sol) polarization free energy of solvation -82.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds