Wall clock time and date at job start Wed Apr 1 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00255 * 2 1 4 4 H 1.48489 * 109.46975 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46879 * 300.00531 * 3 2 1 6 6 H 1.48497 * 109.46639 * 60.00110 * 3 2 1 7 7 C 1.38952 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99871 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99954 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99929 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99988 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46913 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00009 * 180.02562 * 13 12 10 15 15 H 1.09000 * 110.63790 * 323.31281 * 14 13 12 16 16 C 1.55164 * 110.72109 * 86.45026 * 14 13 12 17 17 C 1.54912 * 101.58027 * 153.86782 * 16 14 13 18 18 N 1.47426 * 104.82828 * 322.99068 * 17 16 14 19 19 C 1.34780 * 125.64288 * 204.09416 * 18 17 16 20 20 O 1.21278 * 119.99795 * 180.02562 * 19 18 17 21 21 C 1.50704 * 120.00166 * 0.02562 * 19 18 17 22 22 H 1.09004 * 115.55517 * 34.31531 * 21 19 18 23 23 C 1.52995 * 117.50103 * 248.62666 * 21 19 18 24 24 C 1.52997 * 117.49892 * 180.02562 * 21 19 18 25 25 H 1.08999 * 117.49822 * 359.97438 * 24 21 19 26 26 C 1.50703 * 117.49913 * 214.98387 * 24 21 19 27 27 C 1.34507 * 125.78834 * 119.71349 * 26 24 21 28 28 C 1.41386 * 106.84010 * 180.26118 * 27 26 24 29 29 C 1.34511 * 106.84141 * 0.02562 * 28 27 26 30 30 O 1.34304 * 125.78797 * 300.02528 * 26 24 21 31 31 C 1.47016 * 108.70610 * 24.35920 * 18 17 16 32 32 H 0.97000 * 119.99929 * 359.97438 * 1 2 3 33 33 H 0.96999 * 119.99906 * 359.97438 * 9 7 2 34 34 H 1.08996 * 109.46958 * 60.00124 * 12 10 9 35 35 H 1.08997 * 109.47400 * 299.99643 * 12 10 9 36 36 H 1.00905 * 110.99995 * 303.94643 * 13 12 10 37 37 H 1.08995 * 110.99794 * 35.79169 * 16 14 13 38 38 H 1.08994 * 111.00226 * 271.94114 * 16 14 13 39 39 H 1.08994 * 110.36308 * 204.15544 * 17 16 14 40 40 H 1.08993 * 110.45875 * 81.87510 * 17 16 14 41 41 H 1.09000 * 117.49757 * 145.02159 * 23 21 19 42 42 H 1.09000 * 117.49948 * 359.97438 * 23 21 19 43 43 H 1.08004 * 126.58507 * 0.26980 * 27 26 24 44 44 H 1.08000 * 126.57862 * 179.97438 * 28 27 26 45 45 H 1.08000 * 125.79502 * 180.02562 * 29 28 27 46 46 H 1.08997 * 109.88222 * 118.12847 * 31 18 17 47 47 H 1.09002 * 109.88452 * 239.29419 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2100 -3.5580 -0.0031 12 6 1.2436 -4.8630 -0.0032 13 7 2.1982 -5.9795 -0.0037 14 6 1.4979 -7.2709 -0.0049 15 1 0.5955 -7.2191 0.6042 16 6 1.1577 -7.7096 -1.4538 17 6 1.0945 -9.2503 -1.3055 18 7 2.1613 -9.5808 -0.3432 19 6 2.7863 -10.7705 -0.2414 20 8 3.6532 -10.9308 0.5915 21 6 2.4080 -11.9017 -1.1625 22 1 2.1190 -11.6094 -2.1721 23 6 1.6971 -13.1077 -0.5454 24 6 3.1537 -13.2273 -0.9966 25 1 3.9182 -13.2812 -0.2215 26 6 3.4329 -14.0292 -2.2417 27 6 4.6501 -14.3746 -2.6983 28 6 4.4473 -15.1117 -3.8877 29 6 3.1184 -15.1721 -4.0870 30 8 2.5090 -14.5151 -3.0866 31 6 2.4261 -8.3996 0.4912 32 1 -0.4850 0.8401 0.0004 33 1 0.3533 -2.3906 -0.0016 34 1 0.6166 -4.9201 -0.8930 35 1 0.6173 -4.9214 0.8869 36 1 2.8330 -5.9122 -0.7852 37 1 1.9464 -7.4157 -2.1463 38 1 0.1945 -7.3075 -1.7677 39 1 1.2861 -9.7318 -2.2644 40 1 0.1238 -9.5560 -0.9155 41 1 0.9405 -13.6090 -1.1489 42 1 1.5034 -13.0833 0.5270 43 1 5.6000 -14.1350 -2.2437 44 1 5.2126 -15.5427 -4.5161 45 1 2.6250 -15.6661 -4.9110 46 1 2.2106 -8.6274 1.5351 47 1 3.4671 -8.0953 0.3833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661349193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:23 Heat of formation + Delta-G solvation = -17.555344 kcal Electronic energy + Delta-G solvation = -28798.696884 eV Core-core repulsion = 24563.255753 eV Total energy + Delta-G solvation = -4235.441131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.97071 -40.51130 -38.75654 -37.96103 -36.64777 -34.79129 -33.81978 -33.36787 -31.28959 -30.73466 -29.93693 -29.12753 -26.50557 -24.89721 -23.72508 -23.59201 -22.92796 -22.06044 -20.95459 -20.47202 -19.36167 -19.29254 -18.19063 -17.94419 -17.34158 -16.65455 -16.32085 -16.04415 -15.88073 -15.31839 -15.30528 -14.63136 -14.54518 -14.08257 -13.87922 -13.69493 -13.62955 -13.50687 -13.19090 -13.07149 -12.94586 -12.64152 -12.60419 -12.38033 -12.34418 -12.11627 -11.69130 -11.51276 -11.45976 -11.39266 -11.08954 -11.06111 -10.93884 -10.35657 -10.27040 -10.24569 -10.11602 -9.54381 -8.88379 -8.74359 -8.52318 -8.13188 -7.98682 -6.44192 -3.84958 1.24262 2.12083 2.30549 2.48438 2.70311 3.15073 3.26026 3.33422 3.43265 3.87132 3.93919 3.99517 4.14559 4.21115 4.25026 4.36105 4.47322 4.61916 4.63136 4.69205 4.85520 4.88753 5.05115 5.09635 5.15114 5.17619 5.22511 5.27279 5.39578 5.42195 5.53407 5.55247 5.62373 5.69911 5.70964 5.71556 5.82797 5.89065 5.92559 6.04946 6.10877 6.23235 6.74742 7.11005 7.24483 7.53380 7.53729 7.90812 8.04003 8.58386 9.15700 9.51404 10.02622 10.73529 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027496 B = 0.001491 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.079069 B =18777.632662 C =18889.146369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.658 5.658 14 C 0.080 3.920 15 H 0.096 0.904 16 C -0.170 4.170 17 C 0.103 3.897 18 N -0.613 5.613 19 C 0.559 3.441 20 O -0.537 6.537 21 C -0.172 4.172 22 H 0.127 0.873 23 C -0.136 4.136 24 C -0.048 4.048 25 H 0.149 0.851 26 C 0.015 3.985 27 C -0.198 4.198 28 C -0.212 4.212 29 C -0.042 4.042 30 O -0.176 6.176 31 C 0.116 3.884 32 H 0.271 0.729 33 H 0.392 0.608 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.354 0.646 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.204 0.796 46 H 0.074 0.926 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 -29.652 -7.267 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.289 5.289 14 C -0.032 4.032 15 H 0.114 0.886 16 C -0.210 4.210 17 C -0.020 4.020 18 N -0.347 5.347 19 C 0.347 3.653 20 O -0.414 6.414 21 C -0.193 4.193 22 H 0.145 0.855 23 C -0.173 4.173 24 C -0.066 4.066 25 H 0.166 0.834 26 C -0.034 4.034 27 C -0.217 4.217 28 C -0.231 4.231 29 C -0.109 4.109 30 O -0.073 6.073 31 C -0.007 4.007 32 H 0.081 0.919 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.174 0.826 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.220 0.780 46 H 0.092 0.908 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.302 -29.548 -6.079 30.195 hybrid contribution -0.441 0.845 -1.246 1.569 sum -1.743 -28.703 -7.325 29.674 Atomic orbital electron populations 1.69618 1.05942 1.28078 1.50646 1.25263 0.95637 0.99737 0.97276 0.85795 0.79741 0.81093 0.77705 1.19201 1.20779 1.20719 1.19765 0.93432 0.82208 1.47496 0.87836 1.41862 1.09193 1.04602 1.64310 1.19787 0.88395 0.84710 0.84633 1.90538 1.13747 1.87030 1.55350 1.21686 0.94268 0.90738 1.01334 1.59974 1.18362 0.99112 1.51488 1.22615 0.96399 0.89527 0.94612 0.88619 1.23624 1.03559 0.94635 0.99134 1.22305 0.90904 0.95944 0.92878 1.48361 1.38228 1.11671 1.36441 1.19098 0.80947 0.81578 0.83650 1.90727 1.31593 1.81850 1.37222 1.22344 1.06955 0.88769 1.01220 0.85534 1.23091 0.94373 0.97423 1.02423 1.20487 0.97979 0.94357 0.93774 0.83376 1.21317 0.87061 1.01544 0.93519 1.21595 0.98165 1.03870 0.98119 1.21869 0.96504 1.05070 0.99681 1.24041 0.92764 1.00901 0.93240 1.83966 1.37181 1.55572 1.30564 1.21929 1.01005 0.83301 0.94472 0.91916 0.77462 0.93620 0.89427 0.82566 0.90106 0.89429 0.90592 0.90834 0.86995 0.87118 0.83217 0.83312 0.77980 0.90771 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 10 C 0.44 10.10 7.82 -10.99 -0.09 10.02 16 11 O -0.58 -15.64 15.78 5.55 0.09 -15.56 16 12 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 13 N -0.66 -9.93 5.91 -106.05 -0.63 -10.55 16 14 C 0.08 0.89 3.23 -65.87 -0.21 0.68 16 15 H 0.10 0.97 7.89 -51.93 -0.41 0.56 16 16 C -0.17 -1.48 6.64 -24.58 -0.16 -1.64 16 17 C 0.10 0.79 6.69 -2.53 -0.02 0.77 16 18 N -0.61 -6.51 3.33 -170.52 -0.57 -7.08 16 19 C 0.56 6.55 7.63 -10.98 -0.08 6.46 16 20 O -0.54 -8.24 16.58 5.56 0.09 -8.15 16 21 C -0.17 -1.48 5.24 -91.77 -0.48 -1.96 16 22 H 0.13 0.95 7.07 -51.93 -0.37 0.58 16 23 C -0.14 -0.95 9.87 -26.76 -0.26 -1.22 16 24 C -0.05 -0.41 5.75 -91.80 -0.53 -0.93 16 25 H 0.15 1.34 7.67 -51.93 -0.40 0.95 16 26 C 0.02 0.14 6.80 -35.63 -0.24 -0.10 16 27 C -0.20 -1.72 10.81 -39.70 -0.43 -2.15 16 28 C -0.21 -1.55 10.91 -39.70 -0.43 -1.98 16 29 C -0.04 -0.28 12.09 29.41 0.36 0.08 16 30 O -0.18 -1.52 10.36 5.70 0.06 -1.46 16 31 C 0.12 1.39 6.63 -3.06 -0.02 1.37 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 34 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 35 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 36 H 0.35 5.60 8.00 -39.29 -0.31 5.29 16 37 H 0.08 0.77 7.81 -51.93 -0.41 0.36 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.48 7.00 -51.93 -0.36 0.12 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.11 0.66 7.96 -51.93 -0.41 0.25 16 42 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.15 1.14 8.06 -52.48 -0.42 0.71 16 44 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.20 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 LS Contribution 400.23 15.07 6.03 6.03 Total: -1.00 -34.17 400.23 -8.88 -43.05 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -6.72 Total: 13.06 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.87 Total: 2.30 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.53 Total: -55.15 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: 0.24 Total: -25.16 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.17 -8.88 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661349193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.498 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds