Wall clock time and date at job start Wed Apr 1 2020 04:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00255 * 2 1 4 4 H 1.48489 * 109.46975 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46879 * 300.00531 * 3 2 1 6 6 H 1.48497 * 109.46639 * 60.00110 * 3 2 1 7 7 C 1.38952 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99871 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99954 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99929 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99988 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46913 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00009 * 180.02562 * 13 12 10 15 15 H 1.09000 * 110.63790 * 323.31281 * 14 13 12 16 16 C 1.55164 * 110.72109 * 86.45026 * 14 13 12 17 17 C 1.54912 * 101.58027 * 153.86782 * 16 14 13 18 18 N 1.47426 * 104.82828 * 322.99068 * 17 16 14 19 19 C 1.34780 * 125.64288 * 204.09416 * 18 17 16 20 20 O 1.21278 * 119.99795 * 180.02562 * 19 18 17 21 21 C 1.50704 * 120.00166 * 0.02562 * 19 18 17 22 22 H 1.09004 * 115.55517 * 34.31531 * 21 19 18 23 23 C 1.52995 * 117.50103 * 248.62666 * 21 19 18 24 24 C 1.52997 * 117.49892 * 180.02562 * 21 19 18 25 25 H 1.08999 * 117.49822 * 359.97438 * 24 21 19 26 26 C 1.50703 * 117.49913 * 214.98387 * 24 21 19 27 27 C 1.34507 * 125.78834 * 119.71349 * 26 24 21 28 28 C 1.41386 * 106.84010 * 180.26118 * 27 26 24 29 29 C 1.34511 * 106.84141 * 0.02562 * 28 27 26 30 30 O 1.34304 * 125.78797 * 300.02528 * 26 24 21 31 31 C 1.47016 * 108.70610 * 24.35920 * 18 17 16 32 32 H 0.97000 * 119.99929 * 359.97438 * 1 2 3 33 33 H 0.96999 * 119.99906 * 359.97438 * 9 7 2 34 34 H 1.08996 * 109.46958 * 60.00124 * 12 10 9 35 35 H 1.08997 * 109.47400 * 299.99643 * 12 10 9 36 36 H 1.00905 * 110.99995 * 303.94643 * 13 12 10 37 37 H 1.08995 * 110.99794 * 35.79169 * 16 14 13 38 38 H 1.08994 * 111.00226 * 271.94114 * 16 14 13 39 39 H 1.08994 * 110.36308 * 204.15544 * 17 16 14 40 40 H 1.08993 * 110.45875 * 81.87510 * 17 16 14 41 41 H 1.09000 * 117.49757 * 145.02159 * 23 21 19 42 42 H 1.09000 * 117.49948 * 359.97438 * 23 21 19 43 43 H 1.08004 * 126.58507 * 0.26980 * 27 26 24 44 44 H 1.08000 * 126.57862 * 179.97438 * 28 27 26 45 45 H 1.08000 * 125.79502 * 180.02562 * 29 28 27 46 46 H 1.08997 * 109.88222 * 118.12847 * 31 18 17 47 47 H 1.09002 * 109.88452 * 239.29419 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2100 -3.5580 -0.0031 12 6 1.2436 -4.8630 -0.0032 13 7 2.1982 -5.9795 -0.0037 14 6 1.4979 -7.2709 -0.0049 15 1 0.5955 -7.2191 0.6042 16 6 1.1577 -7.7096 -1.4538 17 6 1.0945 -9.2503 -1.3055 18 7 2.1613 -9.5808 -0.3432 19 6 2.7863 -10.7705 -0.2414 20 8 3.6532 -10.9308 0.5915 21 6 2.4080 -11.9017 -1.1625 22 1 2.1190 -11.6094 -2.1721 23 6 1.6971 -13.1077 -0.5454 24 6 3.1537 -13.2273 -0.9966 25 1 3.9182 -13.2812 -0.2215 26 6 3.4329 -14.0292 -2.2417 27 6 4.6501 -14.3746 -2.6983 28 6 4.4473 -15.1117 -3.8877 29 6 3.1184 -15.1721 -4.0870 30 8 2.5090 -14.5151 -3.0866 31 6 2.4261 -8.3996 0.4912 32 1 -0.4850 0.8401 0.0004 33 1 0.3533 -2.3906 -0.0016 34 1 0.6166 -4.9201 -0.8930 35 1 0.6173 -4.9214 0.8869 36 1 2.8330 -5.9122 -0.7852 37 1 1.9464 -7.4157 -2.1463 38 1 0.1945 -7.3075 -1.7677 39 1 1.2861 -9.7318 -2.2644 40 1 0.1238 -9.5560 -0.9155 41 1 0.9405 -13.6090 -1.1489 42 1 1.5034 -13.0833 0.5270 43 1 5.6000 -14.1350 -2.2437 44 1 5.2126 -15.5427 -4.5161 45 1 2.6250 -15.6661 -4.9110 46 1 2.2106 -8.6274 1.5351 47 1 3.4671 -8.0953 0.3833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661349193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:22 Heat of formation + Delta-G solvation = -41.675154 kcal Electronic energy + Delta-G solvation = -28799.742797 eV Core-core repulsion = 24563.255753 eV Total energy + Delta-G solvation = -4236.487045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.53565 -41.37515 -40.20628 -39.19309 -37.45439 -36.19943 -35.55724 -33.93582 -33.26698 -31.72924 -30.54397 -30.01860 -27.98484 -26.18597 -25.02828 -24.18437 -23.63914 -22.63523 -21.84964 -21.14377 -21.03140 -20.12320 -19.92000 -18.87588 -18.09545 -17.66790 -17.49087 -16.99591 -16.77364 -16.67735 -16.33086 -16.03441 -15.78117 -15.48757 -15.17641 -14.84036 -14.46593 -14.19311 -14.12615 -14.01894 -13.77286 -13.61092 -13.51715 -13.47908 -13.40610 -13.10309 -12.96704 -12.92345 -12.67696 -12.43332 -12.37453 -12.11885 -12.07809 -11.81513 -11.63491 -11.51083 -11.04580 -10.84444 -10.35690 -10.00654 -9.76114 -9.32052 -9.31427 -8.46674 -5.94973 0.66006 1.36330 1.36716 1.42451 1.56132 1.63603 1.79687 2.03679 2.06300 2.29837 2.77468 2.90492 3.20936 3.28317 3.42410 3.47206 3.59052 3.67487 3.81643 3.93522 4.07385 4.09033 4.14865 4.25554 4.31801 4.34766 4.37233 4.51529 4.58717 4.62222 4.65808 4.78553 4.82831 4.83172 4.86871 5.00539 5.01471 5.03746 5.09242 5.18831 5.21428 5.41881 5.57196 5.89313 6.10347 6.17800 6.32844 6.41196 6.60994 7.02002 7.13648 7.57316 8.13181 8.70738 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.027496 B = 0.001491 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.079069 B =18777.632662 C =18889.146369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.627 6.627 12 C 0.070 3.930 13 N -0.678 5.678 14 C 0.085 3.915 15 H 0.114 0.886 16 C -0.162 4.162 17 C 0.103 3.897 18 N -0.612 5.612 19 C 0.552 3.448 20 O -0.585 6.585 21 C -0.169 4.169 22 H 0.143 0.857 23 C -0.114 4.114 24 C -0.057 4.057 25 H 0.134 0.866 26 C 0.002 3.998 27 C -0.218 4.218 28 C -0.229 4.229 29 C -0.035 4.035 30 O -0.184 6.184 31 C 0.116 3.884 32 H 0.278 0.722 33 H 0.398 0.602 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.346 0.654 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.112 0.888 43 H 0.149 0.851 44 H 0.166 0.834 45 H 0.241 0.759 46 H 0.067 0.933 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 -30.737 -8.789 32.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.514 6.514 12 C -0.062 4.062 13 N -0.309 5.309 14 C -0.025 4.025 15 H 0.132 0.868 16 C -0.201 4.201 17 C -0.019 4.019 18 N -0.345 5.345 19 C 0.342 3.658 20 O -0.466 6.466 21 C -0.190 4.190 22 H 0.161 0.839 23 C -0.151 4.151 24 C -0.076 4.076 25 H 0.152 0.848 26 C -0.048 4.048 27 C -0.237 4.237 28 C -0.248 4.248 29 C -0.102 4.102 30 O -0.080 6.080 31 C -0.007 4.007 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.095 0.905 35 H 0.126 0.874 36 H 0.166 0.834 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.149 0.851 42 H 0.130 0.870 43 H 0.167 0.833 44 H 0.184 0.816 45 H 0.257 0.743 46 H 0.085 0.915 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.807 -30.643 -7.618 31.804 hybrid contribution 0.370 1.111 -0.778 1.406 sum -3.437 -29.532 -8.396 30.894 Atomic orbital electron populations 1.69665 1.06702 1.29213 1.50322 1.25988 0.96534 1.02251 0.96278 0.84899 0.77976 0.77289 0.78346 1.20042 1.19508 1.19650 1.19688 0.92661 0.84160 1.49927 0.90547 1.41914 1.09366 1.04628 1.65010 1.20976 0.88251 0.86341 0.82145 1.90508 1.16129 1.88017 1.56717 1.21533 0.93736 0.87274 1.03683 1.59907 1.18909 1.00434 1.51673 1.22617 0.96088 0.87019 0.96800 0.86767 1.23577 1.04328 0.95366 0.96858 1.22549 0.90898 0.95231 0.93189 1.48449 1.38607 1.10865 1.36537 1.19684 0.80224 0.82393 0.83457 1.90701 1.33727 1.82765 1.39377 1.22277 1.07732 0.87778 1.01221 0.83896 1.23176 0.93626 0.95576 1.02765 1.20393 0.98790 0.94609 0.93782 0.84841 1.21310 0.87277 1.02284 0.93928 1.21855 0.98357 1.04430 0.99033 1.22165 0.97614 1.05427 0.99576 1.24814 0.92778 0.99524 0.93068 1.83957 1.37300 1.55841 1.30943 1.21787 0.99696 0.84533 0.94690 0.91290 0.76814 0.90497 0.87386 0.83430 0.91088 0.87143 0.88649 0.88334 0.85109 0.86957 0.83320 0.81630 0.74299 0.91459 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 N -0.57 -28.67 5.29 -306.98 -1.62 -30.29 16 10 C 0.44 20.16 7.82 87.66 0.69 20.85 16 11 O -0.63 -34.71 15.78 -3.06 -0.05 -34.76 16 12 C 0.07 2.18 6.02 85.56 0.52 2.69 16 13 N -0.68 -20.01 5.91 -489.43 -2.89 -22.91 16 14 C 0.09 1.74 3.23 46.11 0.15 1.89 16 15 H 0.11 1.96 7.89 -2.39 -0.02 1.94 16 16 C -0.16 -2.36 6.64 31.99 0.21 -2.14 16 17 C 0.10 1.26 6.69 86.86 0.58 1.84 16 18 N -0.61 -12.41 3.33 -811.80 -2.70 -15.11 16 19 C 0.55 12.91 7.63 87.66 0.67 13.58 16 20 O -0.58 -18.85 16.58 -3.02 -0.05 -18.90 16 21 C -0.17 -2.70 5.24 -11.54 -0.06 -2.77 16 22 H 0.14 1.79 7.07 -2.39 -0.02 1.78 16 23 C -0.11 -1.42 9.87 30.58 0.30 -1.11 16 24 C -0.06 -0.97 5.75 -11.56 -0.07 -1.03 16 25 H 0.13 2.62 7.67 -2.39 -0.02 2.60 16 26 C 0.00 0.03 6.80 24.83 0.17 0.20 16 27 C -0.22 -3.76 10.81 22.19 0.24 -3.52 16 28 C -0.23 -3.04 10.91 22.19 0.24 -2.80 16 29 C -0.04 -0.38 12.09 66.97 0.81 0.43 16 30 O -0.18 -2.80 10.36 -2.51 -0.03 -2.83 16 31 C 0.12 2.80 6.63 86.73 0.58 3.38 16 32 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.40 18.67 7.90 -92.71 -0.73 17.94 16 34 H 0.08 1.96 8.13 -2.39 -0.02 1.94 16 35 H 0.11 2.98 8.08 -2.39 -0.02 2.96 16 36 H 0.35 11.05 8.00 -89.69 -0.72 10.34 16 37 H 0.07 1.21 7.81 -2.39 -0.02 1.19 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 0.85 7.00 -2.39 -0.02 0.84 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.13 1.16 7.96 -2.39 -0.02 1.14 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 45 H 0.24 0.47 8.06 -2.91 -0.02 0.45 16 46 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.05 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -77.27 400.23 0.84 -76.44 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -0.43 Total: 38.70 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.30 Total: 13.31 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -6.93 Total: -116.70 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.12 Total: -56.49 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -77.27 0.84 -76.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661349193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.760 kcal (2) G-P(sol) polarization free energy of solvation -77.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds