Wall clock time and date at job start Wed Apr 1 2020 04:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.09003 * 112.85123 * 45.33209 * 11 10 9 13 13 C 1.53781 * 113.61494 * 176.52847 * 11 10 9 14 14 C 1.53781 * 87.08219 * 139.98040 * 13 11 10 15 15 H 1.08998 * 113.61569 * 219.93152 * 14 13 11 16 16 N 1.46498 * 113.61687 * 89.11614 * 14 13 11 17 17 C 1.34775 * 120.00345 * 155.00344 * 16 14 13 18 18 O 1.21586 * 120.00005 * 359.97438 * 17 16 14 19 19 C 1.47527 * 120.00352 * 180.02562 * 17 16 14 20 20 C 1.39858 * 120.70809 * 359.71548 * 19 17 16 21 21 C 1.38621 * 118.63993 * 179.81530 * 20 19 17 22 22 C 1.38098 * 119.52581 * 0.34848 * 21 20 19 23 23 N 1.32429 * 120.63791 * 359.91453 * 22 21 20 24 24 C 1.31998 * 122.28840 * 359.93327 * 23 22 21 25 25 O 1.35430 * 119.83802 * 179.97438 * 24 23 22 26 26 C 1.50917 * 121.01519 * 180.11809 * 22 21 20 27 27 C 1.52931 * 109.78287 * 342.73720 * 26 22 21 28 28 O 1.43205 * 108.52037 * 49.54479 * 27 26 22 29 29 C 1.42742 * 113.07033 * 289.24478 * 28 27 26 30 30 C 1.53781 * 113.61137 * 274.13357 * 11 10 9 31 31 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 32 32 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46794 * 299.99871 * 10 9 7 34 34 H 1.09000 * 109.47559 * 59.99394 * 10 9 7 35 35 H 1.09000 * 113.61251 * 254.52895 * 13 11 10 36 36 H 1.08999 * 113.61627 * 25.42900 * 13 11 10 37 37 H 0.97003 * 119.99886 * 334.99585 * 16 14 13 38 38 H 1.08004 * 120.68386 * 0.03353 * 20 19 17 39 39 H 0.96703 * 113.99713 * 270.02559 * 25 24 23 40 40 H 1.09004 * 109.42303 * 102.83868 * 26 22 21 41 41 H 1.09010 * 109.41820 * 222.70193 * 26 22 21 42 42 H 1.09006 * 109.62695 * 169.25075 * 27 26 22 43 43 H 1.09001 * 109.62804 * 289.83164 * 27 26 22 44 44 H 1.09003 * 109.33608 * 171.79255 * 29 28 27 45 45 H 1.09001 * 109.34078 * 291.46404 * 29 28 27 46 46 H 1.08997 * 113.61804 * 334.56581 * 30 11 10 47 47 H 1.09006 * 113.61234 * 105.47618 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 6 5.6162 -2.1914 -0.0244 12 1 5.9066 -1.4217 0.6908 13 6 6.4792 -3.4618 0.0536 14 6 7.4152 -2.7939 -0.9675 15 1 7.7971 -3.4798 -1.7237 16 7 8.4678 -1.9801 -0.3543 17 6 9.6188 -1.7552 -1.0184 18 8 9.7838 -2.2281 -2.1263 19 6 10.6789 -0.9362 -0.4007 20 6 10.5030 -0.3810 0.8709 21 6 11.5287 0.3783 1.4121 22 6 12.6873 0.5730 0.6863 23 7 12.8266 0.0405 -0.5182 24 6 11.8827 -0.6927 -1.0785 25 8 12.0777 -1.2130 -2.3136 26 6 13.8261 1.3914 1.2440 27 6 13.3268 2.2461 2.4098 28 8 12.5954 1.4056 3.3095 29 6 11.3406 0.9780 2.7803 30 6 6.1968 -1.9752 -1.4318 31 1 -0.4850 0.8400 0.0004 32 1 3.8645 -0.3622 -0.0119 33 1 3.8524 -3.0450 0.8712 34 1 3.8450 -3.0400 -0.9087 35 1 6.9384 -3.6184 1.0297 36 1 5.9805 -4.3526 -0.3285 37 1 8.3362 -1.6030 0.5297 38 1 9.5881 -0.5434 1.4214 39 1 11.7848 -0.6376 -3.0334 40 1 14.6138 0.7246 1.5947 41 1 14.2221 2.0408 0.4632 42 1 14.1767 2.6876 2.9304 43 1 12.6749 3.0342 2.0331 44 1 10.9041 0.2320 3.4445 45 1 10.6691 1.8335 2.7076 46 1 5.6209 -2.4587 -2.2208 47 1 6.4286 -0.9333 -1.6533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675813618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:29 Heat of formation + Delta-G solvation = -44.639264 kcal Electronic energy + Delta-G solvation = -29918.028373 eV Core-core repulsion = 25681.412794 eV Total energy + Delta-G solvation = -4236.615578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.65048 -40.26241 -39.19369 -38.14083 -37.14649 -34.80784 -34.31249 -33.09749 -32.25569 -31.32822 -30.78322 -27.34695 -26.11738 -25.67765 -25.57743 -23.63583 -23.24106 -22.35709 -21.41457 -20.81018 -19.38683 -19.00647 -18.02942 -17.82149 -17.55213 -16.82320 -16.63608 -16.02542 -15.60470 -15.50286 -15.12570 -15.04556 -14.61170 -14.34908 -14.34336 -14.30550 -14.10355 -13.66012 -13.45738 -13.31694 -12.70085 -12.66977 -12.53418 -12.38011 -12.27103 -12.03936 -11.87069 -11.55142 -11.46512 -10.94521 -10.79955 -10.67077 -10.37769 -10.31933 -10.22173 -10.17269 -9.98684 -9.81554 -9.60933 -9.29669 -9.11293 -8.90490 -7.24635 -5.79178 -3.14346 0.04106 0.48893 2.41016 2.72433 2.96100 3.22995 3.28193 3.33372 3.35290 3.41676 3.82163 3.86899 4.01372 4.23872 4.40675 4.52654 4.52922 4.55851 4.60046 4.68386 4.75249 4.79409 4.93237 4.94209 4.98589 5.04887 5.08858 5.21213 5.31288 5.49506 5.51333 5.57550 5.63646 5.75704 5.79828 5.80310 5.89684 6.03789 6.04102 6.18722 6.43661 6.46918 6.64375 6.77137 7.07042 7.20532 7.34444 7.91836 7.97562 8.40176 9.19443 9.91843 10.11884 11.39427 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.002446 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.544974 B =11442.492855 C =12939.563946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.278 1.278 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.119 4.119 12 H 0.085 0.915 13 C -0.136 4.136 14 C 0.116 3.884 15 H 0.103 0.897 16 N -0.705 5.705 17 C 0.566 3.434 18 O -0.516 6.516 19 C -0.204 4.204 20 C -0.019 4.019 21 C -0.191 4.191 22 C 0.189 3.811 23 N -0.508 5.508 24 C 0.379 3.621 25 O -0.458 6.458 26 C -0.108 4.108 27 C 0.058 3.942 28 O -0.370 6.370 29 C 0.107 3.893 30 C -0.140 4.140 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.027 0.973 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.398 0.602 38 H 0.147 0.853 39 H 0.407 0.593 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.951 2.109 4.257 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.401 5.401 10 C 0.039 3.961 11 C -0.138 4.138 12 H 0.103 0.897 13 C -0.174 4.174 14 C 0.011 3.989 15 H 0.121 0.879 16 N -0.357 5.357 17 C 0.352 3.648 18 O -0.392 6.392 19 C -0.211 4.211 20 C -0.045 4.045 21 C -0.194 4.194 22 C 0.051 3.949 23 N -0.227 5.227 24 C 0.198 3.802 25 O -0.266 6.266 26 C -0.145 4.145 27 C -0.019 4.019 28 O -0.288 6.288 29 C 0.030 3.970 30 C -0.179 4.179 31 H 0.069 0.931 32 H 0.192 0.808 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.233 0.767 38 H 0.164 0.836 39 H 0.267 0.733 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.130 0.870 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 30.858 1.239 3.389 31.068 hybrid contribution -0.673 1.658 0.203 1.801 sum 30.185 2.897 3.592 30.535 Atomic orbital electron populations 1.69704 1.05095 1.25798 1.57684 1.24686 0.95251 0.97207 1.02162 0.86528 0.79196 0.85027 0.77661 1.21145 1.20422 1.21735 1.19080 0.80734 0.94724 1.42800 0.89245 1.42693 1.03983 1.02270 1.91136 1.20616 0.87603 0.89249 0.98599 1.22821 0.96607 0.97215 0.97155 0.89678 1.23302 0.96601 0.98482 0.99037 1.22021 0.86562 0.93537 0.96746 0.87855 1.45578 1.15876 1.53388 1.20822 1.17725 0.81384 0.80320 0.85415 1.90826 1.79632 1.49854 1.18897 1.21099 0.96578 1.05708 0.97729 1.21567 0.98275 0.91737 0.92937 1.21077 0.95792 1.02681 0.99835 1.20880 0.93572 0.92538 0.87863 1.67119 1.32087 1.10748 1.12767 1.19037 0.86051 0.87484 0.87667 1.84722 1.85509 1.44185 1.12192 1.21211 0.95634 0.98900 0.98800 1.22728 0.96865 0.91963 0.90385 1.88130 1.31724 1.67852 1.41104 1.21406 0.86558 0.99134 0.89915 1.23483 0.95804 1.00748 0.97855 0.93068 0.80774 0.95472 0.95334 0.91096 0.88293 0.76673 0.83562 0.73259 0.88142 0.88035 0.87277 0.92038 0.86973 0.90835 0.88672 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 21.86 27.74 -169.99 -4.72 17.15 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.28 -6.44 6.51 56.52 0.37 -6.07 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.24 -6.86 10.47 -15.06 -0.16 -7.01 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.76 -17.56 5.41 -59.91 -0.32 -17.88 16 10 C 0.17 3.04 6.08 -4.05 -0.02 3.01 16 11 C -0.12 -1.61 3.62 -89.81 -0.33 -1.94 16 12 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.14 -1.43 7.39 -25.92 -0.19 -1.62 16 14 C 0.12 1.31 4.33 -67.02 -0.29 1.02 16 15 H 0.10 1.27 7.46 -51.93 -0.39 0.88 16 16 N -0.71 -7.16 5.22 -53.97 -0.28 -7.44 16 17 C 0.57 6.81 7.77 -12.47 -0.10 6.71 16 18 O -0.52 -7.87 14.81 -16.41 -0.24 -8.11 16 19 C -0.20 -2.13 5.90 -104.74 -0.62 -2.75 16 20 C -0.02 -0.15 9.27 -38.83 -0.36 -0.51 16 21 C -0.19 -1.46 5.80 -104.60 -0.61 -2.07 16 22 C 0.19 1.65 6.68 -82.28 -0.55 1.10 16 23 N -0.51 -5.54 10.23 -9.14 -0.09 -5.63 16 24 C 0.38 4.34 7.77 -16.71 -0.13 4.21 16 25 O -0.46 -5.29 11.68 -39.68 -0.46 -5.75 16 26 C -0.11 -0.63 6.23 -27.81 -0.17 -0.80 16 27 C 0.06 0.27 6.84 37.12 0.25 0.53 16 28 O -0.37 -2.59 10.81 -35.23 -0.38 -2.97 16 29 C 0.11 0.62 6.65 35.94 0.24 0.86 16 30 C -0.14 -1.85 7.44 -25.82 -0.19 -2.04 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.36 8.14 5.52 -40.82 -0.23 7.91 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.54 7.87 -51.93 -0.41 0.13 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.40 3.07 6.81 -40.82 -0.28 2.79 16 38 H 0.15 0.70 6.51 -52.48 -0.34 0.36 16 39 H 0.41 3.05 9.06 45.56 0.41 3.46 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 42 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.25 8.07 -51.93 -0.42 -0.17 16 44 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 1.30 7.92 -51.93 -0.41 0.88 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 385.33 15.07 5.81 5.81 Total: -1.00 -37.02 385.33 -9.12 -46.14 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.88 Total: 8.56 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -3.32 Total: -1.32 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.08 Total: -59.50 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -1.09 Total: -16.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.02 -9.12 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675813618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.499 kcal (2) G-P(sol) polarization free energy of solvation -37.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds