Wall clock time and date at job start Wed Apr 1 2020 04:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00140 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99987 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00023 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08001 * 119.99999 * 359.71854 * 7 2 1 9 9 N 1.36936 * 119.99842 * 179.72505 * 7 2 1 10 10 C 1.46493 * 120.00314 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.09003 * 112.85123 * 45.33209 * 11 10 9 13 13 C 1.53781 * 113.61494 * 176.52847 * 11 10 9 14 14 C 1.53781 * 87.08219 * 139.98040 * 13 11 10 15 15 H 1.08998 * 113.61569 * 219.93152 * 14 13 11 16 16 N 1.46498 * 113.61687 * 89.11614 * 14 13 11 17 17 C 1.34775 * 120.00345 * 155.00344 * 16 14 13 18 18 O 1.21586 * 120.00005 * 359.97438 * 17 16 14 19 19 C 1.47527 * 120.00352 * 180.02562 * 17 16 14 20 20 C 1.39858 * 120.70809 * 359.71548 * 19 17 16 21 21 C 1.38621 * 118.63993 * 179.81530 * 20 19 17 22 22 C 1.38098 * 119.52581 * 0.34848 * 21 20 19 23 23 N 1.32429 * 120.63791 * 359.91453 * 22 21 20 24 24 C 1.31998 * 122.28840 * 359.93327 * 23 22 21 25 25 O 1.35430 * 119.83802 * 179.97438 * 24 23 22 26 26 C 1.50917 * 121.01519 * 180.11809 * 22 21 20 27 27 C 1.52931 * 109.78287 * 342.73720 * 26 22 21 28 28 O 1.43205 * 108.52037 * 49.54479 * 27 26 22 29 29 C 1.42742 * 113.07033 * 289.24478 * 28 27 26 30 30 C 1.53781 * 113.61137 * 274.13357 * 11 10 9 31 31 H 0.96999 * 119.99889 * 359.97438 * 1 2 3 32 32 H 0.97000 * 119.99646 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46794 * 299.99871 * 10 9 7 34 34 H 1.09000 * 109.47559 * 59.99394 * 10 9 7 35 35 H 1.09000 * 113.61251 * 254.52895 * 13 11 10 36 36 H 1.08999 * 113.61627 * 25.42900 * 13 11 10 37 37 H 0.97003 * 119.99886 * 334.99585 * 16 14 13 38 38 H 1.08004 * 120.68386 * 0.03353 * 20 19 17 39 39 H 0.96703 * 113.99713 * 270.02559 * 25 24 23 40 40 H 1.09004 * 109.42303 * 102.83868 * 26 22 21 41 41 H 1.09010 * 109.41820 * 222.70193 * 26 22 21 42 42 H 1.09006 * 109.62695 * 169.25075 * 27 26 22 43 43 H 1.09001 * 109.62804 * 289.83164 * 27 26 22 44 44 H 1.09003 * 109.33608 * 171.79255 * 29 28 27 45 45 H 1.09001 * 109.34078 * 291.46404 * 29 28 27 46 46 H 1.08997 * 113.61804 * 334.56581 * 30 11 10 47 47 H 1.09006 * 113.61234 * 105.47618 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4701 -2.1375 -0.0058 9 7 3.3795 -1.2022 -0.0115 10 6 4.1120 -2.4709 -0.0183 11 6 5.6162 -2.1914 -0.0244 12 1 5.9066 -1.4217 0.6908 13 6 6.4792 -3.4618 0.0536 14 6 7.4152 -2.7939 -0.9675 15 1 7.7971 -3.4798 -1.7237 16 7 8.4678 -1.9801 -0.3543 17 6 9.6188 -1.7552 -1.0184 18 8 9.7838 -2.2281 -2.1263 19 6 10.6789 -0.9362 -0.4007 20 6 10.5030 -0.3810 0.8709 21 6 11.5287 0.3783 1.4121 22 6 12.6873 0.5730 0.6863 23 7 12.8266 0.0405 -0.5182 24 6 11.8827 -0.6927 -1.0785 25 8 12.0777 -1.2130 -2.3136 26 6 13.8261 1.3914 1.2440 27 6 13.3268 2.2461 2.4098 28 8 12.5954 1.4056 3.3095 29 6 11.3406 0.9780 2.7803 30 6 6.1968 -1.9752 -1.4318 31 1 -0.4850 0.8400 0.0004 32 1 3.8645 -0.3622 -0.0119 33 1 3.8524 -3.0450 0.8712 34 1 3.8450 -3.0400 -0.9087 35 1 6.9384 -3.6184 1.0297 36 1 5.9805 -4.3526 -0.3285 37 1 8.3362 -1.6030 0.5297 38 1 9.5881 -0.5434 1.4214 39 1 11.7848 -0.6376 -3.0334 40 1 14.6138 0.7246 1.5947 41 1 14.2221 2.0408 0.4632 42 1 14.1767 2.6876 2.9304 43 1 12.6749 3.0342 2.0331 44 1 10.9041 0.2320 3.4445 45 1 10.6691 1.8335 2.7076 46 1 5.6209 -2.4587 -2.2208 47 1 6.4286 -0.9333 -1.6533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675813618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:28 Heat of formation + Delta-G solvation = -74.658393 kcal Electronic energy + Delta-G solvation = -29919.330100 eV Core-core repulsion = 25681.412794 eV Total energy + Delta-G solvation = -4237.917305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.32960 -41.12852 -39.89840 -39.04995 -37.82901 -36.47859 -35.14149 -34.13774 -33.14932 -32.83797 -31.49698 -28.85153 -26.65970 -26.63712 -26.26169 -24.94722 -24.01097 -23.31308 -22.80408 -21.54232 -20.53437 -19.75958 -19.49186 -18.70301 -18.46675 -17.38188 -17.29172 -16.90535 -16.62917 -16.27459 -16.13439 -15.88281 -15.85366 -15.74758 -15.31882 -15.02722 -14.86169 -14.76623 -14.47844 -14.29880 -13.91964 -13.80524 -13.50766 -13.38518 -13.15621 -13.00726 -12.90401 -12.73077 -12.65622 -12.17505 -11.94489 -11.87388 -11.72171 -11.46240 -11.41862 -11.20419 -11.06712 -10.89406 -10.73796 -10.56338 -10.14795 -9.80955 -9.26992 -8.02394 -5.35440 -0.65817 -0.14027 1.36699 1.41658 1.49105 1.61728 1.90249 2.28114 2.48871 2.53616 2.87972 3.21832 3.28302 3.33119 3.46892 3.47764 3.57630 3.62414 3.85348 3.92183 3.94022 4.08661 4.12419 4.13620 4.26973 4.38301 4.52554 4.54939 4.57160 4.69126 4.72110 4.77806 4.85559 4.87066 4.89479 4.90753 4.99379 5.03663 5.12374 5.24283 5.24790 5.31962 5.63063 5.77072 6.06680 6.21991 6.35460 6.45315 6.66816 7.07930 7.09363 7.86497 8.05577 9.19428 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.002446 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.544974 B =11442.492855 C =12939.563946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.252 1.252 6 H -0.299 1.299 7 C -0.235 4.235 8 H 0.054 0.946 9 N -0.757 5.757 10 C 0.161 3.839 11 C -0.114 4.114 12 H 0.100 0.900 13 C -0.118 4.118 14 C 0.125 3.875 15 H 0.094 0.906 16 N -0.692 5.692 17 C 0.566 3.434 18 O -0.556 6.556 19 C -0.218 4.218 20 C -0.009 4.009 21 C -0.188 4.188 22 C 0.176 3.824 23 N -0.530 5.530 24 C 0.359 3.641 25 O -0.478 6.478 26 C -0.107 4.107 27 C 0.058 3.942 28 O -0.387 6.387 29 C 0.105 3.895 30 C -0.145 4.145 31 H 0.257 0.743 32 H 0.366 0.634 33 H 0.027 0.973 34 H 0.021 0.979 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.413 0.587 38 H 0.180 0.820 39 H 0.417 0.583 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.070 0.930 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.088 3.389 6.246 32.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.260 4.260 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.176 1.176 6 H -0.226 1.226 7 C -0.366 4.366 8 H 0.072 0.928 9 N -0.403 5.403 10 C 0.035 3.965 11 C -0.132 4.132 12 H 0.118 0.882 13 C -0.156 4.156 14 C 0.020 3.980 15 H 0.112 0.888 16 N -0.344 5.344 17 C 0.353 3.647 18 O -0.435 6.435 19 C -0.225 4.225 20 C -0.034 4.034 21 C -0.191 4.191 22 C 0.039 3.961 23 N -0.250 5.250 24 C 0.178 3.822 25 O -0.287 6.287 26 C -0.144 4.144 27 C -0.019 4.019 28 O -0.306 6.306 29 C 0.028 3.972 30 C -0.183 4.183 31 H 0.066 0.934 32 H 0.199 0.801 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.251 0.749 38 H 0.197 0.803 39 H 0.279 0.721 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.089 0.911 44 H 0.148 0.852 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 33.038 2.502 5.408 33.571 hybrid contribution -1.339 1.185 -0.410 1.835 sum 31.699 3.688 4.999 32.302 Atomic orbital electron populations 1.69902 1.07269 1.26705 1.59836 1.25582 0.96181 1.01523 1.02720 0.85338 0.78525 0.79219 0.78260 1.19900 1.17621 1.22580 1.19069 0.83023 0.93387 1.41148 0.92833 1.42706 1.02288 1.04395 1.90884 1.20818 0.90445 0.87161 0.98046 1.22775 0.93230 0.99485 0.97726 0.88207 1.23232 0.95126 0.97167 1.00067 1.21834 0.86195 0.93095 0.96908 0.88826 1.45437 1.14952 1.52832 1.21216 1.17971 0.81882 0.79884 0.84937 1.90805 1.80445 1.51570 1.20709 1.20986 0.95881 1.06682 0.98956 1.21894 0.99403 0.90369 0.91776 1.21380 0.95131 1.01985 1.00587 1.21467 0.94956 0.92313 0.87365 1.67132 1.32363 1.11478 1.14011 1.19258 0.86880 0.88345 0.87759 1.84673 1.85820 1.45216 1.13018 1.21315 0.94786 0.98884 0.99460 1.22884 0.97617 0.91542 0.89822 1.88113 1.32324 1.68270 1.41848 1.21609 0.86593 1.00143 0.88809 1.23491 0.96768 1.00548 0.97531 0.93381 0.80080 0.95509 0.96056 0.88594 0.87782 0.74910 0.80296 0.72079 0.88103 0.87238 0.85282 0.91124 0.85250 0.89136 0.89623 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.24 13.97 21.65 0.30 -62.93 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 3 Si 0.96 44.54 27.74 68.60 1.90 46.45 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.25 -10.45 6.51 99.48 0.65 -9.80 16 6 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.24 -13.35 10.47 84.03 0.88 -12.47 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 9 N -0.76 -34.15 5.41 -343.47 -1.86 -36.00 16 10 C 0.16 5.65 6.08 86.38 0.53 6.17 16 11 C -0.11 -2.74 3.62 -10.27 -0.04 -2.78 16 12 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.12 -2.10 7.39 31.12 0.23 -1.87 16 14 C 0.13 2.55 4.33 45.58 0.20 2.74 16 15 H 0.09 2.18 7.46 -2.39 -0.02 2.16 16 16 N -0.69 -12.20 5.22 -442.93 -2.31 -14.51 16 17 C 0.57 12.93 7.77 86.69 0.67 13.60 16 18 O -0.56 -16.98 14.81 16.76 0.25 -16.73 16 19 C -0.22 -4.27 5.90 -19.94 -0.12 -4.39 16 20 C -0.01 -0.11 9.27 22.75 0.21 0.10 16 21 C -0.19 -2.38 5.80 -19.85 -0.12 -2.49 16 22 C 0.18 2.82 6.68 42.50 0.28 3.10 16 23 N -0.53 -11.37 10.23 -295.97 -3.03 -14.39 16 24 C 0.36 8.19 7.77 85.16 0.66 8.85 16 25 O -0.48 -11.46 11.68 -66.51 -0.78 -12.24 16 26 C -0.11 -1.06 6.23 29.89 0.19 -0.87 16 27 C 0.06 0.39 6.84 71.96 0.49 0.88 16 28 O -0.39 -4.25 10.81 -148.98 -1.61 -5.86 16 29 C 0.11 0.84 6.65 71.19 0.47 1.31 16 30 C -0.14 -3.55 7.44 31.18 0.23 -3.32 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.37 15.54 5.52 -92.71 -0.51 15.03 16 33 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.02 0.79 7.87 -2.39 -0.02 0.77 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.41 4.68 6.81 -92.71 -0.63 4.05 16 38 H 0.18 0.89 6.51 -2.91 -0.02 0.88 16 39 H 0.42 6.82 9.06 -74.06 -0.67 6.15 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 43 H 0.07 0.35 8.07 -2.39 -0.02 0.33 16 44 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.09 2.26 7.92 -2.39 -0.02 2.24 16 47 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -82.52 385.33 -2.72 -85.23 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: -0.84 Total: 25.97 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.24 Total: 5.02 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -6.89 Total: -127.84 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -2.14 Total: -34.83 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.45 kcal Total: -82.52 -2.72 -85.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675813618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.575 kcal (2) G-P(sol) polarization free energy of solvation -82.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds