Wall clock time and date at job start Wed Apr 1 2020 04:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 120.00545 * 2 1 4 4 H 1.48497 * 109.47043 * 269.99879 * 3 2 1 5 5 H 1.48503 * 109.46694 * 29.99428 * 3 2 1 6 6 H 1.48493 * 109.47307 * 149.99510 * 3 2 1 7 7 C 1.38959 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00180 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00140 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99698 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00294 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47481 * 180.02562 * 12 10 9 14 14 C 1.48561 * 110.99763 * 290.12718 * 13 12 10 15 15 C 1.54382 * 104.59442 * 200.95961 * 14 13 12 16 16 C 1.54254 * 105.05881 * 23.85303 * 15 14 13 17 17 H 1.09011 * 110.31933 * 241.00175 * 16 15 14 18 18 N 1.46501 * 110.32601 * 118.90148 * 16 15 14 19 19 C 1.34770 * 120.00122 * 86.44770 * 18 16 15 20 20 O 1.21282 * 120.00256 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00010 * 180.02562 * 19 18 16 22 22 O 1.42902 * 109.47357 * 180.02562 * 21 19 18 23 23 C 1.35898 * 116.99694 * 180.02562 * 22 21 19 24 24 C 1.38735 * 120.05254 * 179.97438 * 23 22 21 25 25 C 1.38144 * 119.94607 * 179.97438 * 24 23 22 26 26 C 1.38266 * 120.05233 * 0.02562 * 25 24 23 27 27 C 1.38269 * 120.11595 * 359.95530 * 26 25 24 28 28 C 1.38142 * 120.04935 * 0.04230 * 27 26 25 29 29 C 1.48556 * 111.00049 * 174.70991 * 13 12 10 30 30 H 0.97007 * 119.99582 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99787 * 0.02562 * 9 7 2 32 32 H 1.09003 * 109.46934 * 59.99884 * 12 10 9 33 33 H 1.09008 * 109.47330 * 300.00529 * 12 10 9 34 34 H 1.08996 * 110.41338 * 82.17908 * 14 13 12 35 35 H 1.09005 * 110.51128 * 319.78863 * 14 13 12 36 36 H 1.09002 * 110.32047 * 264.95327 * 15 14 13 37 37 H 1.09001 * 110.41055 * 142.79168 * 15 14 13 38 38 H 0.96998 * 119.99602 * 266.44879 * 18 16 15 39 39 H 1.08999 * 109.46805 * 59.99992 * 21 19 18 40 40 H 1.08998 * 109.47364 * 300.00344 * 21 19 18 41 41 H 1.08002 * 120.02704 * 359.70561 * 24 23 22 42 42 H 1.08001 * 119.97447 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.94089 * 179.97438 * 26 25 24 44 44 H 1.07992 * 119.97577 * 180.02562 * 27 26 25 45 45 H 1.08005 * 120.02253 * 180.02562 * 28 27 26 46 46 H 1.08998 * 110.41518 * 40.25861 * 29 13 12 47 47 H 1.09005 * 110.40859 * 277.81468 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0030 12 6 1.2435 -4.8630 0.0010 13 7 2.1980 -5.9796 0.0030 14 6 2.9087 -6.0747 -1.2981 15 6 3.4285 -7.5274 -1.3522 16 6 2.4978 -8.3213 -0.4125 17 1 3.0701 -8.7600 0.4050 18 7 1.7937 -9.3674 -1.1582 19 6 2.3693 -10.5732 -1.3340 20 8 3.4700 -10.7926 -0.8744 21 6 1.6452 -11.6491 -2.1016 22 8 2.4542 -12.8261 -2.1504 23 6 1.9441 -13.8983 -2.8115 24 6 2.6761 -15.0736 -2.8984 25 6 2.1553 -16.1623 -3.5705 26 6 0.9058 -16.0811 -4.1569 27 6 0.1740 -14.9111 -4.0714 28 6 0.6904 -13.8196 -3.4003 29 6 1.4940 -7.2815 0.1303 30 1 -0.4850 0.8401 -0.0004 31 1 0.3532 -2.3906 -0.0002 32 1 0.6179 -4.9208 -0.8897 33 1 0.6157 -4.9205 0.8903 34 1 3.7411 -5.3717 -1.3289 35 1 2.2219 -5.8858 -2.1232 36 1 4.4572 -7.5749 -0.9950 37 1 3.3627 -7.9171 -2.3680 38 1 0.9132 -9.1920 -1.5255 39 1 1.4474 -11.3014 -3.1155 40 1 0.7019 -11.8774 -1.6053 41 1 3.6542 -15.1358 -2.4447 42 1 2.7250 -17.0773 -3.6388 43 1 0.5005 -16.9333 -4.6823 44 1 -0.8019 -14.8503 -4.5298 45 1 0.1183 -12.9060 -3.3335 46 1 0.5842 -7.2821 -0.4699 47 1 1.2613 -7.4872 1.1752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690109764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:15 Heat of formation + Delta-G solvation = -90.880605 kcal Electronic energy + Delta-G solvation = -28695.432384 eV Core-core repulsion = 24456.811631 eV Total energy + Delta-G solvation = -4238.620753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.54920 -40.87080 -40.19919 -39.03702 -38.11458 -36.02343 -35.43420 -33.30956 -32.50865 -31.95860 -31.10638 -29.95090 -28.96782 -27.74293 -25.94353 -23.77249 -23.22938 -22.69117 -21.97696 -21.47599 -20.86543 -19.85903 -19.39638 -18.36088 -17.88344 -17.53856 -17.34433 -16.93245 -16.76309 -16.60005 -16.36364 -16.05239 -15.72508 -15.42914 -15.34277 -15.16283 -14.81017 -14.57079 -14.31705 -14.22961 -13.70557 -13.67776 -13.56085 -13.43644 -13.20334 -12.95733 -12.82875 -12.47054 -12.42759 -12.40331 -12.37303 -12.11962 -12.08305 -11.84038 -11.78418 -11.47491 -11.00426 -10.34380 -10.20570 -9.99179 -9.94065 -9.38699 -9.19578 -8.45835 -5.93856 0.40571 0.48734 1.38023 1.42017 1.44576 1.46797 1.54508 2.07752 2.29058 2.55736 2.85730 2.91978 3.21270 3.35238 3.45779 3.60045 3.79306 3.90090 4.01487 4.04103 4.06325 4.11075 4.25778 4.29953 4.31182 4.35626 4.46070 4.48755 4.54562 4.54969 4.67039 4.72940 4.78807 4.93657 5.03990 5.10163 5.13849 5.33106 5.35049 5.42125 5.49092 5.62383 5.81601 5.84056 5.91070 6.08280 6.32844 6.49067 6.62642 7.13060 7.14966 7.58573 8.15316 8.71502 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.035216 B = 0.001431 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.909854 B =19558.992054 C =19939.823683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.333 4.333 8 H 0.076 0.924 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.618 6.618 12 C 0.049 3.951 13 N -0.511 5.511 14 C 0.041 3.959 15 C -0.124 4.124 16 C 0.152 3.848 17 H 0.083 0.917 18 N -0.700 5.700 19 C 0.514 3.486 20 O -0.570 6.570 21 C 0.043 3.957 22 O -0.323 6.323 23 C 0.106 3.894 24 C -0.175 4.175 25 C -0.085 4.085 26 C -0.164 4.164 27 C -0.085 4.085 28 C -0.214 4.214 29 C 0.035 3.965 30 H 0.277 0.723 31 H 0.397 0.603 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.421 0.579 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.082 0.918 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.204 -30.253 -9.175 32.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.463 4.463 8 H 0.094 0.906 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.504 6.504 12 C -0.082 4.082 13 N -0.236 5.236 14 C -0.087 4.087 15 C -0.164 4.164 16 C 0.046 3.954 17 H 0.101 0.899 18 N -0.355 5.355 19 C 0.300 3.700 20 O -0.448 6.448 21 C -0.035 4.035 22 O -0.237 6.237 23 C 0.062 3.938 24 C -0.194 4.194 25 C -0.103 4.103 26 C -0.182 4.182 27 C -0.103 4.103 28 C -0.232 4.232 29 C -0.093 4.093 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.260 0.740 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.169 0.831 45 H 0.170 0.830 46 H 0.100 0.900 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.214 -30.119 -8.284 31.849 hybrid contribution -0.719 1.287 -0.649 1.610 sum -6.933 -28.832 -8.933 30.970 Atomic orbital electron populations 1.69660 1.06702 1.29210 1.50443 1.25967 0.96513 1.02186 0.96351 0.84974 0.77886 0.77155 0.78608 1.19665 1.19495 1.20037 1.19633 0.92619 0.84126 1.49895 0.90579 1.41905 1.09291 1.04597 1.65373 1.20830 0.88301 0.86049 0.82147 1.90498 1.15921 1.87887 1.56127 1.21925 0.93710 0.88463 1.04109 1.65043 1.24298 1.01636 1.32574 1.23026 0.98736 0.96913 0.90006 1.22652 0.99671 0.93631 1.00420 1.21454 0.93147 0.87051 0.93720 0.89904 1.45740 1.22341 1.11158 1.56227 1.20603 0.85902 0.83507 0.79955 1.90766 1.22156 1.81399 1.50453 1.22652 0.94503 0.83303 1.03043 1.86113 1.45346 1.20725 1.71497 1.19312 0.93676 0.87218 0.93628 1.20697 1.01480 0.92210 1.05015 1.21274 0.96085 0.97808 0.95128 1.21470 0.95230 0.99355 1.02145 1.21362 1.00439 0.92100 0.96350 1.21571 0.95452 1.02276 1.03922 1.23394 0.95620 0.87052 1.03252 0.91333 0.76928 0.90354 0.86724 0.92387 0.93051 0.92076 0.89837 0.74024 0.85924 0.85613 0.85890 0.83463 0.83632 0.83144 0.82979 0.89985 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.86 13.05 21.66 0.28 -48.58 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 N -0.57 -28.93 5.29 -306.98 -1.62 -30.55 16 10 C 0.44 20.54 7.59 87.65 0.66 21.20 16 11 O -0.62 -34.27 14.42 -3.09 -0.04 -34.31 16 12 C 0.05 1.58 5.30 85.55 0.45 2.03 16 13 N -0.51 -15.58 5.06 -886.04 -4.49 -20.07 16 14 C 0.04 1.26 5.80 86.45 0.50 1.76 16 15 C -0.12 -3.15 6.78 31.49 0.21 -2.93 16 16 C 0.15 3.18 3.36 45.88 0.15 3.34 16 17 H 0.08 2.12 7.64 -2.38 -0.02 2.11 16 18 N -0.70 -9.92 5.04 -438.29 -2.21 -12.13 16 19 C 0.51 9.98 7.90 87.66 0.69 10.67 16 20 O -0.57 -17.80 16.20 16.00 0.26 -17.54 16 21 C 0.04 0.52 5.22 71.24 0.37 0.90 16 22 O -0.32 -6.74 9.67 -73.37 -0.71 -7.45 16 23 C 0.11 1.86 6.69 22.51 0.15 2.01 16 24 C -0.18 -3.00 9.99 22.37 0.22 -2.78 16 25 C -0.09 -1.04 10.04 22.25 0.22 -0.82 16 26 C -0.16 -1.63 10.04 22.28 0.22 -1.40 16 27 C -0.08 -0.80 10.04 22.25 0.22 -0.58 16 28 C -0.21 -2.46 9.04 22.36 0.20 -2.26 16 29 C 0.03 0.68 6.19 86.45 0.54 1.21 16 30 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 31 H 0.40 18.76 7.90 -92.70 -0.73 18.02 16 32 H 0.08 2.10 7.89 -2.39 -0.02 2.08 16 33 H 0.11 3.15 8.13 -2.38 -0.02 3.13 16 34 H 0.06 2.29 6.91 -2.39 -0.02 2.27 16 35 H 0.05 1.41 7.83 -2.38 -0.02 1.39 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.86 7.95 -2.39 -0.02 1.84 16 38 H 0.42 2.50 8.34 -92.71 -0.77 1.73 16 39 H 0.12 0.76 7.66 -2.39 -0.02 0.74 16 40 H 0.13 0.70 7.66 -2.39 -0.02 0.68 16 41 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 42 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 44 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 45 H 0.15 0.84 6.30 -2.91 -0.02 0.82 16 46 H 0.08 1.09 7.59 -2.39 -0.02 1.07 16 47 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -81.44 394.53 -0.88 -82.32 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.49 Total: 29.21 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.11 Total: 14.25 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -8.03 Total: -111.32 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -0.49 Total: -59.30 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -81.44 -0.88 -82.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690109764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.562 kcal (2) G-P(sol) polarization free energy of solvation -81.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds