Wall clock time and date at job start Wed Apr 1 2020 04:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47042 * 270.00274 * 3 2 1 5 5 H 1.48504 * 109.46870 * 30.00076 * 3 2 1 6 6 H 1.48502 * 109.47159 * 149.99850 * 3 2 1 7 7 C 1.38811 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99889 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00082 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00181 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85065 * 336.19421 * 10 9 7 12 12 C 1.53788 * 113.69147 * 107.45945 * 10 9 7 13 13 C 1.53786 * 87.07557 * 89.12860 * 12 10 9 14 14 H 1.09000 * 113.68986 * 270.87080 * 13 12 10 15 15 C 1.52998 * 113.60947 * 139.98598 * 13 12 10 16 16 N 1.46495 * 109.47531 * 87.50270 * 15 13 12 17 17 C 1.34777 * 120.00303 * 179.97438 * 16 15 13 18 18 O 1.21289 * 119.99777 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00356 * 179.97438 * 17 16 15 20 20 O 1.42901 * 109.46963 * 180.02562 * 19 17 16 21 21 C 1.35707 * 116.99372 * 180.02562 * 20 19 17 22 22 C 1.38996 * 119.91798 * 359.71337 * 21 20 19 23 23 C 1.37700 * 120.09315 * 180.27683 * 22 21 20 24 24 C 1.39731 * 119.90789 * 359.97438 * 23 22 21 25 25 C 1.47604 * 120.08799 * 179.97438 * 24 23 22 26 26 N 1.34783 * 119.99864 * 0.02562 * 25 24 23 27 27 O 1.21586 * 120.00392 * 180.02562 * 25 24 23 28 28 C 1.39736 * 119.82676 * 0.02562 * 24 23 22 29 29 C 1.37693 * 119.91130 * 0.02562 * 28 24 23 30 30 C 1.53772 * 113.61491 * 204.99712 * 10 9 7 31 31 H 0.96999 * 120.00111 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99970 * 359.97438 * 9 7 2 33 33 H 1.08996 * 113.61369 * 334.58173 * 12 10 9 34 34 H 1.09001 * 113.61541 * 203.67660 * 12 10 9 35 35 H 1.08996 * 109.47142 * 327.49699 * 15 13 12 36 36 H 1.09002 * 109.46792 * 207.49930 * 15 13 12 37 37 H 0.96994 * 120.00003 * 359.97438 * 16 15 13 38 38 H 1.08996 * 109.47239 * 59.99710 * 19 17 16 39 39 H 1.09002 * 109.46886 * 299.99824 * 19 17 16 40 40 H 1.08008 * 119.95278 * 0.28489 * 22 21 20 41 41 H 1.07996 * 120.04686 * 180.02562 * 23 22 21 42 42 H 0.97003 * 119.99627 * 359.97438 * 26 25 24 43 43 H 0.96997 * 120.00015 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.04053 * 179.97438 * 28 24 23 45 45 H 1.07999 * 119.95958 * 180.02562 * 29 28 24 46 46 H 1.09005 * 113.61545 * 156.25082 * 30 10 9 47 47 H 1.09005 * 113.61606 * 25.35090 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5277 -3.2971 0.4050 12 6 4.7875 -2.7945 -1.3432 13 6 6.0133 -2.0257 -0.8222 14 1 5.9900 -0.9595 -1.0479 15 6 7.3474 -2.6808 -1.1855 16 7 7.7835 -2.2042 -2.5003 17 6 8.9410 -2.6489 -3.0285 18 8 9.6218 -3.4433 -2.4150 19 6 9.3893 -2.1590 -4.3813 20 8 10.6354 -2.7709 -4.7205 21 6 11.1816 -2.4342 -5.9163 22 6 10.5257 -1.5357 -6.7497 23 6 11.0739 -1.1960 -7.9664 24 6 12.2915 -1.7555 -8.3625 25 6 12.8824 -1.3946 -9.6661 26 7 12.2476 -0.5239 -10.4758 27 8 13.9417 -1.8826 -10.0095 28 6 12.9477 -2.6584 -7.5219 29 6 12.3925 -2.9938 -6.3073 30 6 5.5258 -2.3660 0.5959 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 4.3065 -2.3210 -2.1990 34 1 4.9712 -3.8582 -1.4946 35 1 7.2247 -3.7634 -1.2138 36 1 8.0960 -2.4194 -0.4377 37 1 7.2392 -1.5685 -2.9908 38 1 9.5114 -1.0763 -4.3536 39 1 8.6408 -2.4212 -5.1291 40 1 9.5849 -1.1033 -6.4425 41 1 10.5639 -0.4975 -8.6131 42 1 11.4023 -0.1348 -10.2020 43 1 12.6357 -0.2870 -11.3326 44 1 13.8888 -3.0932 -7.8248 45 1 12.8993 -3.6912 -5.6568 46 1 5.9113 -3.3126 0.9748 47 1 5.6408 -1.5467 1.3056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707092464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:43 Heat of formation + Delta-G solvation = -48.484255 kcal Electronic energy + Delta-G solvation = -28266.361399 eV Core-core repulsion = 24029.579090 eV Total energy + Delta-G solvation = -4236.782310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07559 -40.19515 -39.50265 -38.68090 -37.37574 -34.92917 -34.33021 -33.35550 -31.70106 -31.05774 -30.70833 -29.37005 -27.05354 -25.27509 -24.23282 -23.67204 -23.17840 -21.87039 -21.18389 -20.76357 -19.18676 -18.74191 -18.27115 -17.81164 -17.60537 -17.10190 -16.90051 -16.27249 -15.72887 -15.56831 -15.32634 -15.14368 -14.91957 -14.60904 -14.46629 -14.22188 -13.98051 -13.75152 -13.67879 -13.34077 -13.03367 -12.85949 -12.82171 -12.57771 -12.13815 -11.71578 -11.57550 -11.50863 -11.46037 -11.00551 -10.61714 -10.57017 -10.44616 -10.23393 -10.22847 -10.02772 -9.74904 -9.66228 -9.62441 -9.27400 -9.00069 -8.82641 -7.38978 -5.87316 -3.24001 0.35926 0.75921 2.09745 2.24821 2.37028 3.00453 3.24812 3.27090 3.29069 3.32892 3.36314 4.02916 4.22388 4.28326 4.36049 4.45620 4.48075 4.51049 4.62982 4.79905 4.81465 4.85508 4.96829 5.03800 5.29576 5.33257 5.35651 5.38972 5.52214 5.64347 5.66009 5.73212 5.77909 5.80210 6.03080 6.05447 6.11934 6.15422 6.26650 6.38514 6.51876 6.62645 6.72012 6.79192 6.80393 7.17773 7.75279 7.87697 7.90303 8.32195 9.09722 9.81779 10.00729 11.30699 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.001578 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.338302 B =17738.301917 C =19103.706615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.729 5.729 10 C 0.172 3.828 11 H 0.072 0.928 12 C -0.167 4.167 13 C -0.124 4.124 14 H 0.090 0.910 15 C 0.132 3.868 16 N -0.720 5.720 17 C 0.513 3.487 18 O -0.520 6.520 19 C 0.037 3.963 20 O -0.283 6.283 21 C 0.162 3.838 22 C -0.221 4.221 23 C -0.041 4.041 24 C -0.185 4.185 25 C 0.568 3.432 26 N -0.853 5.853 27 O -0.544 6.544 28 C -0.016 4.016 29 C -0.156 4.156 30 C -0.149 4.149 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.404 0.596 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.400 0.600 43 H 0.405 0.595 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.082 0.918 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.440 -1.179 -16.965 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.060 3.940 11 H 0.090 0.910 12 C -0.208 4.208 13 C -0.143 4.143 14 H 0.109 0.891 15 C 0.010 3.990 16 N -0.373 5.373 17 C 0.297 3.703 18 O -0.395 6.395 19 C -0.041 4.041 20 O -0.194 6.194 21 C 0.115 3.885 22 C -0.239 4.239 23 C -0.060 4.060 24 C -0.188 4.188 25 C 0.355 3.645 26 N -0.417 5.417 27 O -0.422 6.422 28 C -0.035 4.035 29 C -0.175 4.175 30 C -0.188 4.188 31 H 0.071 0.929 32 H 0.195 0.805 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.230 0.770 43 H 0.236 0.764 44 H 0.162 0.838 45 H 0.160 0.840 46 H 0.101 0.899 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.395 -2.353 -16.381 29.479 hybrid contribution -0.270 2.177 -0.631 2.283 sum 24.125 -0.176 -17.012 29.520 Atomic orbital electron populations 1.69695 1.05101 1.25934 1.57053 1.24684 0.95244 0.97207 1.01834 0.86566 0.79254 0.85055 0.77720 1.21089 1.21616 1.20346 1.19116 0.80395 0.94866 1.43457 0.89002 1.42508 1.03959 1.01576 1.88916 1.21000 0.90119 0.89952 0.92883 0.91027 1.23870 0.96403 0.98867 1.01616 1.22769 0.92503 1.00058 0.98931 0.89147 1.21534 0.95849 0.99111 0.82532 1.45895 1.22434 1.47537 1.21432 1.19925 0.81646 0.82079 0.86689 1.90771 1.53888 1.33122 1.61671 1.22594 0.86120 0.98973 0.96446 1.86154 1.35605 1.64553 1.33096 1.19374 0.92506 0.92362 0.84267 1.21224 1.02850 1.03265 0.96585 1.21045 0.93383 0.96449 0.95140 1.19765 0.97988 1.04523 0.96532 1.18172 0.83944 0.78200 0.84169 1.43761 1.27133 1.48017 1.22797 1.90830 1.22357 1.53704 1.75314 1.21095 0.98638 0.92698 0.91076 1.20478 0.94914 1.04107 0.97998 1.23470 0.98770 1.01684 0.94906 0.92941 0.80540 0.91269 0.90856 0.91079 0.91487 0.76210 0.88547 0.88453 0.84505 0.85205 0.77007 0.76397 0.83758 0.83989 0.89917 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.97 55.49 0.78 -27.47 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 20.96 27.74 -169.99 -4.71 16.24 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.15 6.52 56.52 0.37 -5.79 16 7 C -0.25 -6.67 10.45 -15.06 -0.16 -6.83 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 9 N -0.73 -15.99 5.12 -52.64 -0.27 -16.26 16 10 C 0.17 2.99 4.56 -67.12 -0.31 2.68 16 11 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 12 C -0.17 -2.36 7.43 -25.91 -0.19 -2.56 16 13 C -0.12 -1.51 3.63 -89.81 -0.33 -1.84 16 14 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 15 C 0.13 1.45 5.51 -4.05 -0.02 1.43 16 16 N -0.72 -6.65 5.56 -60.30 -0.33 -6.99 16 17 C 0.51 5.49 7.91 -10.98 -0.09 5.40 16 18 O -0.52 -8.00 16.50 -14.36 -0.24 -8.24 16 19 C 0.04 0.27 5.21 36.01 0.19 0.46 16 20 O -0.28 -2.81 9.66 -38.74 -0.37 -3.19 16 21 C 0.16 1.34 6.70 -39.02 -0.26 1.08 16 22 C -0.22 -1.31 9.01 -39.50 -0.36 -1.67 16 23 C -0.04 -0.22 9.53 -39.22 -0.37 -0.59 16 24 C -0.18 -1.36 5.87 -104.96 -0.62 -1.98 16 25 C 0.57 4.63 8.04 -12.44 -0.10 4.53 16 26 N -0.85 -3.40 8.82 30.47 0.27 -3.13 16 27 O -0.54 -6.62 17.18 5.29 0.09 -6.53 16 28 C -0.02 -0.13 9.58 -39.22 -0.38 -0.50 16 29 C -0.16 -1.26 9.97 -39.50 -0.39 -1.66 16 30 C -0.15 -2.04 7.39 -25.93 -0.19 -2.23 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.36 7.74 5.76 -40.82 -0.24 7.50 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 35 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.40 2.74 8.47 -40.82 -0.35 2.39 16 38 H 0.10 0.44 7.66 -51.93 -0.40 0.04 16 39 H 0.10 0.45 7.64 -51.93 -0.40 0.06 16 40 H 0.14 0.49 6.28 -52.48 -0.33 0.16 16 41 H 0.13 0.25 6.39 -52.49 -0.34 -0.09 16 42 H 0.40 0.47 6.85 -40.82 -0.28 0.19 16 43 H 0.40 1.19 8.93 -40.82 -0.36 0.83 16 44 H 0.14 1.09 7.64 -52.49 -0.40 0.69 16 45 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -37.06 396.13 -8.94 -46.01 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.45 Total: 7.78 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.67 Total: -4.20 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.44 Total: -53.84 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.52 Total: -17.96 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.06 -8.94 -46.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707092464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.478 kcal (2) G-P(sol) polarization free energy of solvation -37.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds