Wall clock time and date at job start Wed Apr 1 2020 04:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47042 * 270.00274 * 3 2 1 5 5 H 1.48504 * 109.46870 * 30.00076 * 3 2 1 6 6 H 1.48502 * 109.47159 * 149.99850 * 3 2 1 7 7 C 1.38811 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99889 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00082 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00181 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.85065 * 336.19421 * 10 9 7 12 12 C 1.53788 * 113.69147 * 107.45945 * 10 9 7 13 13 C 1.53786 * 87.07557 * 89.12860 * 12 10 9 14 14 H 1.09000 * 113.68986 * 270.87080 * 13 12 10 15 15 C 1.52998 * 113.60947 * 139.98598 * 13 12 10 16 16 N 1.46495 * 109.47531 * 87.50270 * 15 13 12 17 17 C 1.34777 * 120.00303 * 179.97438 * 16 15 13 18 18 O 1.21289 * 119.99777 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00356 * 179.97438 * 17 16 15 20 20 O 1.42901 * 109.46963 * 180.02562 * 19 17 16 21 21 C 1.35707 * 116.99372 * 180.02562 * 20 19 17 22 22 C 1.38996 * 119.91798 * 359.71337 * 21 20 19 23 23 C 1.37700 * 120.09315 * 180.27683 * 22 21 20 24 24 C 1.39731 * 119.90789 * 359.97438 * 23 22 21 25 25 C 1.47604 * 120.08799 * 179.97438 * 24 23 22 26 26 N 1.34783 * 119.99864 * 0.02562 * 25 24 23 27 27 O 1.21586 * 120.00392 * 180.02562 * 25 24 23 28 28 C 1.39736 * 119.82676 * 0.02562 * 24 23 22 29 29 C 1.37693 * 119.91130 * 0.02562 * 28 24 23 30 30 C 1.53772 * 113.61491 * 204.99712 * 10 9 7 31 31 H 0.96999 * 120.00111 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99970 * 359.97438 * 9 7 2 33 33 H 1.08996 * 113.61369 * 334.58173 * 12 10 9 34 34 H 1.09001 * 113.61541 * 203.67660 * 12 10 9 35 35 H 1.08996 * 109.47142 * 327.49699 * 15 13 12 36 36 H 1.09002 * 109.46792 * 207.49930 * 15 13 12 37 37 H 0.96994 * 120.00003 * 359.97438 * 16 15 13 38 38 H 1.08996 * 109.47239 * 59.99710 * 19 17 16 39 39 H 1.09002 * 109.46886 * 299.99824 * 19 17 16 40 40 H 1.08008 * 119.95278 * 0.28489 * 22 21 20 41 41 H 1.07996 * 120.04686 * 180.02562 * 23 22 21 42 42 H 0.97003 * 119.99627 * 359.97438 * 26 25 24 43 43 H 0.96997 * 120.00015 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.04053 * 179.97438 * 28 24 23 45 45 H 1.07999 * 119.95958 * 180.02562 * 29 28 24 46 46 H 1.09005 * 113.61545 * 156.25082 * 30 10 9 47 47 H 1.09005 * 113.61606 * 25.35090 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5277 -3.2971 0.4050 12 6 4.7875 -2.7945 -1.3432 13 6 6.0133 -2.0257 -0.8222 14 1 5.9900 -0.9595 -1.0479 15 6 7.3474 -2.6808 -1.1855 16 7 7.7835 -2.2042 -2.5003 17 6 8.9410 -2.6489 -3.0285 18 8 9.6218 -3.4433 -2.4150 19 6 9.3893 -2.1590 -4.3813 20 8 10.6354 -2.7709 -4.7205 21 6 11.1816 -2.4342 -5.9163 22 6 10.5257 -1.5357 -6.7497 23 6 11.0739 -1.1960 -7.9664 24 6 12.2915 -1.7555 -8.3625 25 6 12.8824 -1.3946 -9.6661 26 7 12.2476 -0.5239 -10.4758 27 8 13.9417 -1.8826 -10.0095 28 6 12.9477 -2.6584 -7.5219 29 6 12.3925 -2.9938 -6.3073 30 6 5.5258 -2.3660 0.5959 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3622 0.0004 33 1 4.3065 -2.3210 -2.1990 34 1 4.9712 -3.8582 -1.4946 35 1 7.2247 -3.7634 -1.2138 36 1 8.0960 -2.4194 -0.4377 37 1 7.2392 -1.5685 -2.9908 38 1 9.5114 -1.0763 -4.3536 39 1 8.6408 -2.4212 -5.1291 40 1 9.5849 -1.1033 -6.4425 41 1 10.5639 -0.4975 -8.6131 42 1 11.4023 -0.1348 -10.2020 43 1 12.6357 -0.2870 -11.3326 44 1 13.8888 -3.0932 -7.8248 45 1 12.8993 -3.6912 -5.6568 46 1 5.9113 -3.3126 0.9748 47 1 5.6408 -1.5467 1.3056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707092464.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:42 Heat of formation + Delta-G solvation = -77.414517 kcal Electronic energy + Delta-G solvation = -28267.615910 eV Core-core repulsion = 24029.579090 eV Total energy + Delta-G solvation = -4238.036820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65799 -40.94245 -40.32543 -39.72132 -37.97646 -36.08705 -34.99483 -34.85846 -32.71575 -32.15907 -31.47097 -30.16968 -28.00841 -26.43799 -25.37666 -24.71975 -23.88985 -23.06898 -21.84023 -21.44734 -20.14163 -19.68769 -19.52396 -18.78214 -18.40407 -17.70809 -17.49349 -17.09270 -16.71682 -16.28713 -16.17838 -16.06663 -15.92461 -15.73988 -15.35043 -15.05463 -14.98658 -14.68425 -14.62105 -14.40730 -14.11266 -13.95954 -13.51531 -13.44459 -13.31541 -13.08114 -12.98914 -12.64840 -12.23123 -12.12472 -11.99851 -11.87808 -11.63507 -11.49550 -11.22995 -11.08644 -10.90545 -10.78402 -10.72376 -10.14730 -10.12336 -9.36231 -9.27818 -8.00907 -5.34830 -0.17756 0.28277 1.38967 1.43459 1.47648 1.49116 1.51088 1.79907 2.50037 2.54272 2.62361 2.80519 3.29566 3.50328 3.53148 3.71062 3.75848 3.83196 3.86938 3.93332 4.02816 4.04024 4.10779 4.18420 4.29587 4.37897 4.39233 4.52488 4.71611 4.78001 4.92385 4.95427 4.99899 5.03160 5.10004 5.16850 5.25435 5.29153 5.33951 5.47522 5.55949 5.57136 5.82640 5.87785 6.19777 6.24127 6.42883 6.49362 7.09809 7.14983 7.29543 7.86433 8.05414 9.20552 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.001578 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.338302 B =17738.301917 C =19103.706615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.301 1.301 6 H -0.250 1.250 7 C -0.234 4.234 8 H 0.055 0.945 9 N -0.732 5.732 10 C 0.143 3.857 11 H 0.054 0.946 12 C -0.153 4.153 13 C -0.102 4.102 14 H 0.096 0.904 15 C 0.139 3.861 16 N -0.708 5.708 17 C 0.510 3.490 18 O -0.575 6.575 19 C 0.037 3.963 20 O -0.313 6.313 21 C 0.149 3.851 22 C -0.214 4.214 23 C -0.030 4.030 24 C -0.196 4.196 25 C 0.564 3.436 26 N -0.830 5.830 27 O -0.596 6.596 28 C -0.029 4.029 29 C -0.172 4.172 30 C -0.136 4.136 31 H 0.257 0.743 32 H 0.368 0.632 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.419 0.581 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.417 0.583 43 H 0.412 0.588 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.104 0.896 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.432 0.936 -18.262 30.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.228 1.228 6 H -0.174 1.174 7 C -0.365 4.365 8 H 0.073 0.927 9 N -0.374 5.374 10 C 0.033 3.967 11 H 0.072 0.928 12 C -0.193 4.193 13 C -0.121 4.121 14 H 0.114 0.886 15 C 0.016 3.984 16 N -0.362 5.362 17 C 0.296 3.704 18 O -0.454 6.454 19 C -0.040 4.040 20 O -0.225 6.225 21 C 0.102 3.898 22 C -0.232 4.232 23 C -0.048 4.048 24 C -0.200 4.200 25 C 0.351 3.649 26 N -0.395 5.395 27 O -0.478 6.478 28 C -0.048 4.048 29 C -0.191 4.191 30 C -0.175 4.175 31 H 0.066 0.934 32 H 0.201 0.799 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.256 0.744 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.187 0.813 41 H 0.187 0.813 42 H 0.250 0.750 43 H 0.244 0.756 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.122 0.878 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.390 -0.222 -17.713 30.958 hybrid contribution -0.646 1.393 -0.216 1.551 sum 24.744 1.172 -17.929 30.579 Atomic orbital electron populations 1.69895 1.07300 1.26701 1.59632 1.25542 0.96109 1.01417 1.02618 0.85379 0.78603 0.79294 0.78291 1.19873 1.22777 1.17436 1.19064 0.82686 0.93406 1.41310 0.92739 1.42402 1.02158 1.03499 1.89374 1.21353 0.91559 0.87780 0.95967 0.92792 1.23698 0.96503 1.00193 0.98951 1.22576 0.92188 1.00113 0.97212 0.88553 1.21325 0.94910 0.98677 0.83517 1.45764 1.22271 1.47332 1.20824 1.20570 0.81114 0.81038 0.87649 1.90753 1.55539 1.35712 1.63415 1.22787 0.85995 1.00497 0.94749 1.86105 1.36874 1.65578 1.33980 1.19520 0.92654 0.93260 0.84332 1.21572 1.03602 1.02049 0.96024 1.21434 0.92148 0.95955 0.95307 1.19860 0.99053 1.04870 0.96203 1.18373 0.83461 0.78321 0.84704 1.43586 1.27255 1.46291 1.22349 1.90806 1.24669 1.55889 1.76423 1.21089 0.98736 0.93494 0.91469 1.20509 0.95692 1.04721 0.98160 1.23374 0.95500 1.02858 0.95798 0.93390 0.79871 0.92382 0.89220 0.91623 0.91620 0.74409 0.85156 0.85297 0.81254 0.81260 0.75021 0.75579 0.84710 0.84570 0.87809 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.41 13.97 21.65 0.30 -61.11 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.96 42.69 27.74 68.60 1.90 44.60 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.25 -9.87 6.52 99.48 0.65 -9.22 16 7 C -0.23 -12.71 10.45 84.03 0.88 -11.84 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 9 N -0.73 -31.26 5.12 -320.45 -1.64 -32.90 16 10 C 0.14 4.78 4.56 45.52 0.21 4.99 16 11 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 12 C -0.15 -3.98 7.43 31.12 0.23 -3.75 16 13 C -0.10 -2.15 3.63 -10.27 -0.04 -2.19 16 14 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 15 C 0.14 2.62 5.51 86.38 0.48 3.10 16 16 N -0.71 -10.66 5.56 -463.06 -2.57 -13.23 16 17 C 0.51 9.62 7.91 87.66 0.69 10.31 16 18 O -0.58 -17.20 16.50 15.98 0.26 -16.93 16 19 C 0.04 0.40 5.21 71.24 0.37 0.77 16 20 O -0.31 -5.68 9.66 -71.24 -0.69 -6.37 16 21 C 0.15 2.20 6.70 22.64 0.15 2.35 16 22 C -0.21 -1.71 9.01 22.32 0.20 -1.51 16 23 C -0.03 -0.21 9.53 22.50 0.21 0.01 16 24 C -0.20 -2.64 5.87 -20.08 -0.12 -2.75 16 25 C 0.56 8.64 8.04 86.71 0.70 9.33 16 26 N -0.83 -4.61 8.82 -175.76 -1.55 -6.16 16 27 O -0.60 -14.85 17.18 -3.99 -0.07 -14.92 16 28 C -0.03 -0.47 9.58 22.50 0.22 -0.26 16 29 C -0.17 -2.83 9.97 22.32 0.22 -2.61 16 30 C -0.14 -3.36 7.39 31.12 0.23 -3.13 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.37 14.74 5.76 -92.71 -0.53 14.21 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.06 7.90 -2.39 -0.02 2.04 16 35 H 0.07 1.36 7.84 -2.39 -0.02 1.34 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.42 3.82 8.47 -92.71 -0.79 3.03 16 38 H 0.13 0.51 7.66 -2.39 -0.02 0.49 16 39 H 0.13 0.56 7.64 -2.39 -0.02 0.54 16 40 H 0.17 0.19 6.28 -2.91 -0.02 0.17 16 41 H 0.17 -0.28 6.39 -2.91 -0.02 -0.30 16 42 H 0.42 -0.63 6.85 -92.71 -0.64 -1.26 16 43 H 0.41 1.56 8.93 -92.71 -0.83 0.73 16 44 H 0.14 2.32 7.64 -2.91 -0.02 2.30 16 45 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.10 2.15 8.10 -2.38 -0.02 2.13 16 47 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -86.03 396.13 -0.74 -86.77 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -1.79 Total: 20.66 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.10 Total: -0.40 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -5.46 Total: -113.40 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.49 Total: -38.23 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.90 Total: 44.60 kcal Total: -86.03 -0.74 -86.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707092464.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.352 kcal (2) G-P(sol) polarization free energy of solvation -86.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds