Wall clock time and date at job start Wed Apr 1 2020 04:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86807 * 119.99819 * 2 1 4 4 H 1.48504 * 109.46909 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46754 * 299.99879 * 3 2 1 6 6 H 1.48499 * 109.46999 * 60.00228 * 3 2 1 7 7 C 1.38955 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00057 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00088 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99729 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00280 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47204 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99932 * 180.02562 * 13 12 10 15 15 C 1.53783 * 113.61295 * 205.00504 * 14 13 12 16 16 C 1.53787 * 87.08182 * 219.93734 * 15 14 13 17 17 C 1.52994 * 113.61636 * 139.98062 * 16 15 14 18 18 N 1.46506 * 109.47229 * 176.53306 * 17 16 15 19 19 C 1.34768 * 120.00175 * 180.02562 * 18 17 16 20 20 O 1.21782 * 119.99790 * 359.97438 * 19 18 17 21 21 C 1.41550 * 120.00379 * 179.97438 * 19 18 17 22 22 C 1.35619 * 120.00405 * 173.23655 * 21 19 18 23 23 C 1.41607 * 120.00075 * 351.25247 * 22 21 19 24 24 C 1.37947 * 126.10135 * 139.48306 * 23 22 21 25 25 C 1.40326 * 106.52604 * 179.75243 * 24 23 22 26 26 C 1.35155 * 107.20114 * 0.40635 * 25 24 23 27 27 O 1.34018 * 109.03579 * 359.58894 * 26 25 24 28 28 C 1.53782 * 87.16981 * 25.38990 * 16 15 14 29 29 H 0.96994 * 119.99834 * 0.02562 * 1 2 3 30 30 H 0.97008 * 120.00459 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46959 * 60.00363 * 12 10 9 32 32 H 1.08997 * 109.47545 * 300.00358 * 12 10 9 33 33 H 1.00890 * 111.00257 * 303.95878 * 13 12 10 34 34 H 1.09003 * 112.85219 * 336.20248 * 14 13 12 35 35 H 1.08998 * 113.61661 * 105.38881 * 15 14 13 36 36 H 1.09006 * 113.61541 * 334.48115 * 15 14 13 37 37 H 1.09001 * 113.61430 * 270.80451 * 16 15 14 38 38 H 1.08997 * 109.47304 * 56.52865 * 17 16 15 39 39 H 1.08996 * 109.47116 * 296.52724 * 17 16 15 40 40 H 0.96997 * 119.99732 * 359.97438 * 18 17 16 41 41 H 1.08007 * 119.99590 * 353.23693 * 21 19 18 42 42 H 1.08007 * 119.99826 * 171.25346 * 22 21 19 43 43 H 1.08002 * 126.73970 * 0.02584 * 24 23 22 44 44 H 1.07996 * 126.39542 * 180.26268 * 25 24 23 45 45 H 1.08007 * 125.47787 * 179.84556 * 26 25 24 46 46 H 1.08997 * 113.61697 * 89.16368 * 28 16 15 47 47 H 1.09004 * 113.61309 * 220.06018 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0026 11 8 3.2104 -3.5578 -0.0031 12 6 1.2440 -4.8629 -0.0032 13 7 2.1986 -5.9795 -0.0050 14 6 1.4983 -7.2708 -0.0062 15 6 2.3275 -8.4217 0.5877 16 6 1.7610 -9.3053 -0.5364 17 6 2.7886 -10.2660 -1.1377 18 7 2.1362 -11.1166 -2.1363 19 6 2.8513 -12.0460 -2.8005 20 8 4.0399 -12.1785 -2.5709 21 6 2.2208 -12.8682 -3.7649 22 6 2.9626 -13.7069 -4.5302 23 6 4.3763 -13.6302 -4.4987 24 6 5.2485 -14.6989 -4.5027 25 6 6.5428 -14.1578 -4.4698 26 6 6.4131 -12.8129 -4.4385 27 8 5.1105 -12.4988 -4.4594 28 6 1.5729 -8.0151 -1.3518 29 1 -0.4849 0.8400 -0.0004 30 1 0.3535 -2.3907 -0.0016 31 1 0.6170 -4.9201 -0.8930 32 1 0.6176 -4.9213 0.8869 33 1 2.8329 -5.9117 -0.7866 34 1 0.4888 -7.2053 0.3996 35 1 2.0052 -8.7231 1.5844 36 1 3.4040 -8.2650 0.5192 37 1 0.8240 -9.7970 -0.2750 38 1 3.2088 -10.8892 -0.3483 39 1 3.5860 -9.6945 -1.6126 40 1 1.1894 -11.0113 -2.3188 41 1 1.1490 -12.8276 -3.8914 42 1 2.4751 -14.4333 -5.1636 43 1 4.9868 -15.7464 -4.5305 44 1 7.4694 -14.7126 -4.4675 45 1 7.2283 -12.1051 -4.4064 46 1 2.4426 -7.7469 -1.9515 47 1 0.6422 -7.9886 -1.9187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707285533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:15 Heat of formation + Delta-G solvation = -35.044849 kcal Electronic energy + Delta-G solvation = -28519.528622 eV Core-core repulsion = 24283.329088 eV Total energy + Delta-G solvation = -4236.199533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.30551 -41.02805 -40.35715 -39.71344 -36.27182 -35.84041 -34.97068 -34.40668 -33.72872 -33.24333 -30.32193 -29.00629 -27.77107 -26.56456 -25.88832 -24.66574 -22.57329 -22.50302 -22.03013 -21.30491 -20.76943 -20.16035 -19.84009 -18.84126 -17.81305 -17.53906 -16.97428 -16.90077 -16.81335 -16.49644 -16.35847 -16.05756 -15.75006 -15.54978 -15.13891 -14.97086 -14.92820 -14.35008 -14.06947 -13.97536 -13.70180 -13.55244 -13.52958 -13.40790 -13.34731 -13.16412 -12.99315 -12.83218 -12.64040 -12.42007 -12.13091 -11.87584 -11.53497 -11.49409 -11.28816 -11.05207 -10.91735 -10.68803 -10.33704 -10.02227 -10.00378 -9.21080 -8.89536 -8.47753 -5.96457 -0.34735 1.19360 1.35933 1.41304 1.55509 1.77566 2.04501 2.28395 2.29592 2.38057 2.55201 2.97251 3.19518 3.50148 3.61667 3.64361 3.87121 3.94473 4.04277 4.08354 4.16351 4.22846 4.28911 4.35306 4.44302 4.51965 4.52089 4.60039 4.71430 4.81738 4.87260 4.87694 4.88855 4.93886 5.08090 5.13167 5.16881 5.23640 5.38373 5.39239 5.41330 5.55050 5.68497 5.94166 6.20490 6.29999 6.41723 6.59760 6.64409 7.12015 7.34046 7.55514 8.11304 8.69794 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.001466 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.433268 B =19091.992435 C =19797.303110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.627 6.627 12 C 0.066 3.934 13 N -0.676 5.676 14 C 0.062 3.938 15 C -0.120 4.120 16 C -0.100 4.100 17 C 0.138 3.862 18 N -0.712 5.712 19 C 0.523 3.477 20 O -0.574 6.574 21 C -0.211 4.211 22 C 0.004 3.996 23 C -0.018 4.018 24 C -0.192 4.192 25 C -0.233 4.233 26 C -0.040 4.040 27 O -0.163 6.163 28 C -0.158 4.158 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.343 0.657 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.416 0.584 41 H 0.179 0.821 42 H 0.197 0.803 43 H 0.172 0.828 44 H 0.166 0.834 45 H 0.215 0.785 46 H 0.069 0.931 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 -31.755 -9.318 33.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.066 4.066 13 N -0.307 5.307 14 C -0.048 4.048 15 C -0.159 4.159 16 C -0.119 4.119 17 C 0.014 3.986 18 N -0.364 5.364 19 C 0.314 3.686 20 O -0.456 6.456 21 C -0.231 4.231 22 C -0.015 4.015 23 C -0.067 4.067 24 C -0.211 4.211 25 C -0.252 4.252 26 C -0.109 4.109 27 O -0.057 6.057 28 C -0.197 4.197 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.162 0.838 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.141 0.859 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.253 0.747 41 H 0.196 0.804 42 H 0.214 0.786 43 H 0.189 0.811 44 H 0.184 0.816 45 H 0.232 0.768 46 H 0.087 0.913 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.858 -31.330 -8.438 32.458 hybrid contribution -0.269 1.094 -0.728 1.341 sum -1.128 -30.236 -9.165 31.615 Atomic orbital electron populations 1.69670 1.06765 1.29254 1.50297 1.26025 0.96556 1.02338 0.96215 0.84876 0.77955 0.77125 0.78392 1.19990 1.19493 1.19513 1.19705 0.92684 0.84153 1.50003 0.90507 1.41935 1.09337 1.04688 1.65019 1.21007 0.88283 0.86349 0.82122 1.90493 1.16063 1.88030 1.56736 1.21577 0.94048 0.87923 1.03045 1.60040 1.18727 1.00917 1.50994 1.23239 0.98121 0.86726 0.96703 1.23039 1.00093 0.94223 0.98505 1.22535 0.99443 0.93326 0.96574 1.21160 0.95121 0.91864 0.90449 1.45832 1.13832 1.35941 1.40798 1.17818 0.86678 0.81174 0.82934 1.90877 1.16918 1.70166 1.67601 1.22510 1.03193 0.99348 0.98021 1.21218 0.87327 0.97118 0.95871 1.20307 0.93810 0.84170 1.08445 1.22542 0.92158 1.00023 1.06332 1.21997 0.99565 0.94225 1.09427 1.24711 0.84038 0.98030 1.04165 1.84235 1.17944 1.34488 1.69059 1.23759 1.02547 0.96400 0.96967 0.91259 0.76894 0.91425 0.87677 0.83791 0.86880 0.90082 0.91157 0.85857 0.92505 0.93736 0.74688 0.80368 0.78638 0.81092 0.81650 0.76821 0.91273 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.55 13.05 21.67 0.28 -49.27 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.34 -19.34 9.68 84.04 0.81 -18.52 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 10 C 0.43 20.98 7.82 87.66 0.69 21.67 16 11 O -0.63 -35.63 15.78 -3.08 -0.05 -35.68 16 12 C 0.07 2.25 6.01 85.56 0.51 2.76 16 13 N -0.68 -21.28 6.24 -492.55 -3.08 -24.36 16 14 C 0.06 1.32 4.18 45.50 0.19 1.51 16 15 C -0.12 -2.32 7.44 31.12 0.23 -2.08 16 16 C -0.10 -1.42 3.75 -10.27 -0.04 -1.46 16 17 C 0.14 2.52 5.50 86.38 0.47 3.00 16 18 N -0.71 -10.64 5.55 -472.20 -2.62 -13.26 16 19 C 0.52 10.45 7.36 85.06 0.63 11.07 16 20 O -0.57 -16.79 12.44 19.09 0.24 -16.55 16 21 C -0.21 -2.51 9.85 22.48 0.22 -2.29 16 22 C 0.00 0.05 9.95 22.49 0.22 0.27 16 23 C -0.02 -0.35 5.30 23.03 0.12 -0.23 16 24 C -0.19 -3.37 10.90 22.71 0.25 -3.12 16 25 C -0.23 -4.23 10.87 22.07 0.24 -3.99 16 26 C -0.04 -0.83 12.06 67.11 0.81 -0.02 16 27 O -0.16 -4.14 7.85 17.60 0.14 -4.00 16 28 C -0.16 -2.73 7.26 31.18 0.23 -2.50 16 29 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.40 19.34 7.90 -92.70 -0.73 18.61 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 3.18 8.13 -2.39 -0.02 3.16 16 33 H 0.34 11.69 7.91 -89.70 -0.71 10.98 16 34 H 0.11 2.05 7.87 -2.39 -0.02 2.03 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.66 8.10 -2.38 -0.02 1.64 16 37 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 1.05 7.87 -2.39 -0.02 1.03 16 40 H 0.42 3.28 8.43 -92.71 -0.78 2.50 16 41 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 42 H 0.20 0.54 8.06 -2.91 -0.02 0.51 16 43 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 45 H 0.22 3.16 8.06 -2.91 -0.02 3.13 16 46 H 0.07 1.46 7.61 -2.39 -0.02 1.44 16 47 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -81.61 400.79 0.17 -81.44 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -1.20 Total: 41.75 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.05 Total: 5.91 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -7.03 Total: -118.14 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: 0.33 Total: -56.23 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -81.61 0.17 -81.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707285533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.394 kcal (2) G-P(sol) polarization free energy of solvation -81.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds