Wall clock time and date at job start Wed Apr 1 2020 04:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48497 * 109.47393 * 270.00398 * 3 2 1 5 5 H 1.48498 * 109.46952 * 30.00502 * 3 2 1 6 6 H 1.48502 * 109.47087 * 150.00355 * 3 2 1 7 7 C 1.38648 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00535 * 359.97438 * 7 2 1 9 9 O 1.34834 * 119.99913 * 179.97438 * 7 2 1 10 10 C 1.35748 * 116.99753 * 185.05894 * 9 7 2 11 11 C 1.38878 * 120.07457 * 354.45734 * 10 9 7 12 12 C 1.38101 * 119.93445 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06709 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93051 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.46960 * 90.00368 * 14 13 12 16 16 C 1.46894 * 111.00150 * 180.02562 * 15 14 13 17 17 H 1.08997 * 112.85391 * 23.80346 * 16 15 14 18 18 C 1.53786 * 113.61544 * 154.99790 * 16 15 14 19 19 C 1.53788 * 87.08101 * 140.06397 * 18 16 15 20 20 H 1.08995 * 113.61163 * 89.20512 * 19 18 16 21 21 N 1.46500 * 113.61383 * 220.01953 * 19 18 16 22 22 C 1.34773 * 119.99764 * 205.00012 * 21 19 18 23 23 O 1.21279 * 120.00162 * 0.02562 * 22 21 19 24 24 C 1.50697 * 119.99835 * 179.72683 * 22 21 19 25 25 C 1.50700 * 109.47363 * 180.27667 * 24 22 21 26 26 N 1.34773 * 120.00213 * 179.97438 * 25 24 22 27 27 O 1.21286 * 119.99932 * 359.97438 * 25 24 22 28 28 C 1.53781 * 87.08022 * 334.56845 * 19 18 16 29 29 C 1.38302 * 120.14073 * 0.25270 * 13 12 11 30 30 C 1.38106 * 120.06420 * 359.44890 * 29 13 12 31 31 H 0.96997 * 119.99861 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.02773 * 0.02562 * 11 10 9 33 33 H 1.07999 * 119.96227 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.47592 * 330.00771 * 14 13 12 35 35 H 1.09000 * 109.47910 * 210.00126 * 14 13 12 36 36 H 1.00902 * 111.00153 * 56.04371 * 15 14 13 37 37 H 1.09007 * 113.61242 * 25.51542 * 18 16 15 38 38 H 1.09000 * 113.61781 * 254.61155 * 18 16 15 39 39 H 0.97005 * 119.99938 * 25.00305 * 21 19 18 40 40 H 1.09001 * 109.47019 * 300.27463 * 24 22 21 41 41 H 1.09004 * 109.47490 * 60.27634 * 24 22 21 42 42 H 0.97004 * 120.00451 * 0.02562 * 26 25 24 43 43 H 0.97000 * 120.00034 * 179.97438 * 26 25 24 44 44 H 1.09002 * 113.61298 * 139.97762 * 28 19 18 45 45 H 1.08996 * 113.61831 * 270.88024 * 28 19 18 46 46 H 1.07999 * 119.96932 * 179.70360 * 29 13 12 47 47 H 1.08002 * 120.03012 * 180.27480 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9733 -2.4056 -0.1082 11 6 3.2234 -3.5744 -0.0951 12 6 3.8533 -4.7986 -0.2038 13 6 5.2296 -4.8614 -0.3251 14 6 5.9138 -6.1988 -0.4429 15 7 6.0175 -6.5727 -1.8598 16 6 6.6803 -7.8745 -2.0136 17 1 6.6014 -8.4976 -1.1228 18 6 6.3053 -8.6070 -3.3128 19 6 7.7818 -9.0259 -3.4101 20 1 8.0037 -9.9645 -2.9023 21 7 8.3175 -8.9759 -4.7727 22 6 9.3656 -9.7515 -5.1136 23 8 9.8651 -10.4911 -4.2924 24 6 9.9127 -9.7047 -6.5170 25 6 11.0689 -10.6637 -6.6377 26 7 11.7184 -10.7918 -7.8116 27 8 11.4150 -11.3202 -5.6784 28 6 8.1094 -7.7780 -2.5733 29 6 5.9797 -3.6995 -0.3327 30 6 5.3551 -2.4720 -0.2305 31 1 -0.4850 0.8400 0.0004 32 1 2.1487 -3.5260 -0.0001 33 1 3.2705 -5.7078 -0.1941 34 1 5.3335 -6.9521 0.0900 35 1 6.9120 -6.1358 -0.0098 36 1 6.4957 -5.8584 -2.3882 37 1 5.9870 -7.9398 -4.1139 38 1 5.6232 -9.4436 -3.1612 39 1 7.9177 -8.3846 -5.4296 40 1 9.1307 -9.9880 -7.2214 41 1 10.2542 -8.6939 -6.7403 42 1 11.4420 -10.2665 -8.5788 43 1 12.4629 -11.4088 -7.8892 44 1 8.8837 -7.9453 -1.8245 45 1 8.2844 -6.8842 -3.1721 46 1 7.0547 -3.7520 -0.4227 47 1 5.9411 -1.5648 -0.2410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713188504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:00 Heat of formation + Delta-G solvation = -51.110456 kcal Electronic energy + Delta-G solvation = -28266.327670 eV Core-core repulsion = 24029.431480 eV Total energy + Delta-G solvation = -4236.896190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.76685 -39.73387 -39.19236 -38.30201 -36.96600 -34.74801 -34.11232 -33.09857 -32.35086 -30.72522 -30.26977 -29.27661 -25.96047 -25.82196 -24.51305 -23.30782 -22.10701 -21.64860 -20.77714 -20.46416 -19.87971 -17.98921 -17.89695 -17.73049 -17.27380 -16.64812 -16.35105 -16.26056 -15.93454 -15.08261 -14.88219 -14.68371 -14.36697 -14.24881 -14.04554 -13.86026 -13.76662 -13.62429 -13.55971 -12.98593 -12.84715 -12.72553 -12.55934 -12.42176 -12.21950 -11.82463 -11.57060 -11.42893 -11.21503 -11.02243 -10.75862 -10.69199 -10.63166 -10.54635 -10.15963 -10.12307 -9.79706 -9.40034 -9.32270 -8.88611 -8.37734 -8.26155 -7.34170 -6.43235 -4.09920 2.11572 2.16207 2.16402 2.37139 2.54273 3.20313 3.23606 3.24105 3.38517 4.06556 4.10067 4.21924 4.29201 4.37865 4.46937 4.57202 4.61137 4.65332 4.72934 4.77607 4.83973 5.09055 5.25074 5.31435 5.38070 5.43242 5.50073 5.64349 5.68500 5.70338 5.76833 5.82838 5.87287 6.12557 6.24725 6.30838 6.33205 6.55449 6.77969 6.80989 6.94797 7.07324 7.15276 7.21038 7.31596 7.39902 7.60047 7.78974 7.80684 7.97607 8.02269 8.91999 9.54269 10.64371 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.001426 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.952092 B =19635.476630 C =20049.641070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.161 3.839 11 C -0.222 4.222 12 C -0.050 4.050 13 C -0.178 4.178 14 C 0.116 3.884 15 N -0.671 5.671 16 C 0.070 3.930 17 H 0.099 0.901 18 C -0.133 4.133 19 C 0.124 3.876 20 H 0.114 0.886 21 N -0.721 5.721 22 C 0.511 3.489 23 O -0.496 6.496 24 C -0.169 4.169 25 C 0.514 3.486 26 N -0.861 5.861 27 O -0.497 6.497 28 C -0.180 4.180 29 C -0.071 4.071 30 C -0.194 4.194 31 H 0.279 0.721 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.344 0.656 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.400 0.600 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.400 0.600 43 H 0.403 0.597 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.702 -17.920 -15.675 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.109 3.891 11 C -0.242 4.242 12 C -0.069 4.069 13 C -0.179 4.179 14 C -0.012 4.012 15 N -0.301 5.301 16 C -0.041 4.041 17 H 0.117 0.883 18 C -0.172 4.172 19 C 0.018 3.982 20 H 0.132 0.868 21 N -0.374 5.374 22 C 0.294 3.706 23 O -0.369 6.369 24 C -0.212 4.212 25 C 0.297 3.703 26 N -0.427 5.427 27 O -0.369 6.369 28 C -0.221 4.221 29 C -0.090 4.090 30 C -0.213 4.213 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.163 0.837 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.234 0.766 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.228 0.772 43 H 0.234 0.766 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.389 -18.723 -14.282 29.878 hybrid contribution 0.937 1.396 -0.775 1.851 sum 19.326 -17.327 -15.057 30.007 Atomic orbital electron populations 1.69647 1.05559 1.28487 1.47982 1.24464 0.95020 0.98803 0.95676 0.86184 0.80324 0.81467 0.78935 1.19903 1.20772 1.18404 1.20777 0.76877 0.96656 1.52218 0.87586 1.83570 1.22647 1.25827 1.80228 1.19142 0.91706 0.85516 0.92746 1.21293 1.01137 0.91888 1.09832 1.20635 0.93413 0.96630 0.96197 1.19196 0.93845 0.93430 1.11448 1.20685 0.97763 0.94560 0.88204 1.60490 1.55447 1.03280 1.10849 1.22799 0.91286 0.92527 0.97533 0.88320 1.23479 0.94773 1.00249 0.98748 1.22385 0.94242 0.99274 0.82267 0.86778 1.45960 1.33613 1.44371 1.13438 1.19987 0.80554 0.80673 0.89348 1.90872 1.57323 1.37540 1.51121 1.21612 0.99164 1.02450 0.97949 1.20002 0.83809 0.83462 0.83077 1.43871 1.37860 1.47781 1.13148 1.90929 1.65045 1.44220 1.36685 1.24216 0.98949 0.98892 1.00045 1.20482 0.98072 0.91524 0.98902 1.20164 0.91971 0.97758 1.11418 0.91046 0.84979 0.87175 0.90973 0.95188 0.83713 0.89069 0.90628 0.76556 0.85932 0.85959 0.77242 0.76595 0.91138 0.89538 0.87342 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.19 13.96 55.48 0.77 -24.41 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.47 28.62 -169.99 -4.86 16.61 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.39 -10.89 9.95 30.88 0.31 -10.59 16 8 H 0.11 3.03 5.44 -52.48 -0.29 2.74 16 9 O -0.22 -5.70 8.59 0.04 0.00 -5.70 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 C -0.22 -4.72 9.17 -39.39 -0.36 -5.08 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 13 C -0.18 -2.79 5.40 -104.58 -0.56 -3.35 16 14 C 0.12 1.41 5.65 -4.98 -0.03 1.38 16 15 N -0.67 -7.22 6.61 -107.13 -0.71 -7.93 16 16 C 0.07 0.60 4.18 -66.90 -0.28 0.32 16 17 H 0.10 0.85 7.87 -51.93 -0.41 0.44 16 18 C -0.13 -0.99 7.63 -25.91 -0.20 -1.18 16 19 C 0.12 0.97 4.24 -67.11 -0.28 0.69 16 20 H 0.11 1.10 7.46 -51.93 -0.39 0.72 16 21 N -0.72 -4.62 5.35 -53.02 -0.28 -4.90 16 22 C 0.51 4.49 7.82 -10.99 -0.09 4.40 16 23 O -0.50 -7.17 13.78 -18.96 -0.26 -7.43 16 24 C -0.17 -0.72 6.19 -29.04 -0.18 -0.90 16 25 C 0.51 3.88 8.09 -10.99 -0.09 3.79 16 26 N -0.86 -2.62 8.87 31.22 0.28 -2.34 16 27 O -0.50 -6.87 15.02 -18.96 -0.28 -7.16 16 28 C -0.18 -1.44 7.50 -25.92 -0.19 -1.63 16 29 C -0.07 -1.14 9.69 -39.61 -0.38 -1.53 16 30 C -0.19 -3.73 9.99 -39.39 -0.39 -4.13 16 31 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.13 2.97 5.64 -52.49 -0.30 2.67 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.34 3.62 8.19 -39.29 -0.32 3.30 16 37 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 1.37 8.73 -40.82 -0.36 1.01 16 40 H 0.12 0.13 8.14 -51.93 -0.42 -0.30 16 41 H 0.12 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.40 -0.21 8.83 -40.82 -0.36 -0.58 16 43 H 0.40 1.13 8.93 -40.82 -0.36 0.76 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 0.65 7.83 -51.93 -0.41 0.25 16 46 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -37.00 397.69 -9.37 -46.37 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.54 Total: 4.89 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.47 Total: -13.99 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.06 Total: -39.59 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.55 Total: -20.29 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.86 Total: 16.61 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.00 -9.37 -46.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713188504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.740 kcal (2) G-P(sol) polarization free energy of solvation -36.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds