Wall clock time and date at job start Wed Apr 1 2020 04:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48497 * 109.47393 * 270.00398 * 3 2 1 5 5 H 1.48498 * 109.46952 * 30.00502 * 3 2 1 6 6 H 1.48502 * 109.47087 * 150.00355 * 3 2 1 7 7 C 1.38648 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00535 * 359.97438 * 7 2 1 9 9 O 1.34834 * 119.99913 * 179.97438 * 7 2 1 10 10 C 1.35748 * 116.99753 * 185.05894 * 9 7 2 11 11 C 1.38878 * 120.07457 * 354.45734 * 10 9 7 12 12 C 1.38101 * 119.93445 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06709 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93051 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.46960 * 90.00368 * 14 13 12 16 16 C 1.46894 * 111.00150 * 180.02562 * 15 14 13 17 17 H 1.08997 * 112.85391 * 23.80346 * 16 15 14 18 18 C 1.53786 * 113.61544 * 154.99790 * 16 15 14 19 19 C 1.53788 * 87.08101 * 140.06397 * 18 16 15 20 20 H 1.08995 * 113.61163 * 89.20512 * 19 18 16 21 21 N 1.46500 * 113.61383 * 220.01953 * 19 18 16 22 22 C 1.34773 * 119.99764 * 205.00012 * 21 19 18 23 23 O 1.21279 * 120.00162 * 0.02562 * 22 21 19 24 24 C 1.50697 * 119.99835 * 179.72683 * 22 21 19 25 25 C 1.50700 * 109.47363 * 180.27667 * 24 22 21 26 26 N 1.34773 * 120.00213 * 179.97438 * 25 24 22 27 27 O 1.21286 * 119.99932 * 359.97438 * 25 24 22 28 28 C 1.53781 * 87.08022 * 334.56845 * 19 18 16 29 29 C 1.38302 * 120.14073 * 0.25270 * 13 12 11 30 30 C 1.38106 * 120.06420 * 359.44890 * 29 13 12 31 31 H 0.96997 * 119.99861 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.02773 * 0.02562 * 11 10 9 33 33 H 1.07999 * 119.96227 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.47592 * 330.00771 * 14 13 12 35 35 H 1.09000 * 109.47910 * 210.00126 * 14 13 12 36 36 H 1.00902 * 111.00153 * 56.04371 * 15 14 13 37 37 H 1.09007 * 113.61242 * 25.51542 * 18 16 15 38 38 H 1.09000 * 113.61781 * 254.61155 * 18 16 15 39 39 H 0.97005 * 119.99938 * 25.00305 * 21 19 18 40 40 H 1.09001 * 109.47019 * 300.27463 * 24 22 21 41 41 H 1.09004 * 109.47490 * 60.27634 * 24 22 21 42 42 H 0.97004 * 120.00451 * 0.02562 * 26 25 24 43 43 H 0.97000 * 120.00034 * 179.97438 * 26 25 24 44 44 H 1.09002 * 113.61298 * 139.97762 * 28 19 18 45 45 H 1.08996 * 113.61831 * 270.88024 * 28 19 18 46 46 H 1.07999 * 119.96932 * 179.70360 * 29 13 12 47 47 H 1.08002 * 120.03012 * 180.27480 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2008 -0.0011 10 6 3.9733 -2.4056 -0.1082 11 6 3.2234 -3.5744 -0.0951 12 6 3.8533 -4.7986 -0.2038 13 6 5.2296 -4.8614 -0.3251 14 6 5.9138 -6.1988 -0.4429 15 7 6.0175 -6.5727 -1.8598 16 6 6.6803 -7.8745 -2.0136 17 1 6.6014 -8.4976 -1.1228 18 6 6.3053 -8.6070 -3.3128 19 6 7.7818 -9.0259 -3.4101 20 1 8.0037 -9.9645 -2.9023 21 7 8.3175 -8.9759 -4.7727 22 6 9.3656 -9.7515 -5.1136 23 8 9.8651 -10.4911 -4.2924 24 6 9.9127 -9.7047 -6.5170 25 6 11.0689 -10.6637 -6.6377 26 7 11.7184 -10.7918 -7.8116 27 8 11.4150 -11.3202 -5.6784 28 6 8.1094 -7.7780 -2.5733 29 6 5.9797 -3.6995 -0.3327 30 6 5.3551 -2.4720 -0.2305 31 1 -0.4850 0.8400 0.0004 32 1 2.1487 -3.5260 -0.0001 33 1 3.2705 -5.7078 -0.1941 34 1 5.3335 -6.9521 0.0900 35 1 6.9120 -6.1358 -0.0098 36 1 6.4957 -5.8584 -2.3882 37 1 5.9870 -7.9398 -4.1139 38 1 5.6232 -9.4436 -3.1612 39 1 7.9177 -8.3846 -5.4296 40 1 9.1307 -9.9880 -7.2214 41 1 10.2542 -8.6939 -6.7403 42 1 11.4420 -10.2665 -8.5788 43 1 12.4629 -11.4088 -7.8892 44 1 8.8837 -7.9453 -1.8245 45 1 8.2844 -6.8842 -3.1721 46 1 7.0547 -3.7520 -0.4227 47 1 5.9411 -1.5648 -0.2410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713188504.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:59 Heat of formation + Delta-G solvation = -81.229058 kcal Electronic energy + Delta-G solvation = -28267.633710 eV Core-core repulsion = 24029.431480 eV Total energy + Delta-G solvation = -4238.202231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39276 -40.89029 -40.30116 -39.08530 -38.45685 -35.66926 -34.66146 -34.44297 -33.81059 -31.79823 -31.30954 -30.46066 -27.54601 -26.58088 -25.74979 -24.16935 -23.66291 -22.24160 -21.95910 -21.26979 -20.58619 -19.78384 -19.06930 -18.45873 -18.22002 -17.25461 -16.95292 -16.81901 -16.78646 -16.67630 -16.00736 -15.75102 -15.68286 -15.45386 -15.29618 -15.04682 -14.94886 -14.50158 -14.33355 -14.30222 -14.12999 -14.06879 -13.64977 -13.36422 -13.06791 -13.04488 -12.83378 -12.59049 -12.41618 -12.29661 -12.08010 -11.93995 -11.70436 -11.60153 -11.25059 -11.20445 -10.88565 -10.56549 -10.49990 -9.95624 -9.77077 -9.22942 -8.93869 -8.48688 -6.21318 0.60407 0.65189 1.32292 1.36292 1.52762 1.66171 1.77598 2.06525 2.29024 2.75021 2.83803 3.04613 3.17197 3.46180 3.59811 3.71198 3.78089 3.94747 4.01325 4.08086 4.16364 4.20940 4.21254 4.43777 4.48176 4.52822 4.61551 4.65070 4.74741 4.83246 4.85577 4.90156 5.01655 5.06396 5.13751 5.21003 5.28980 5.41265 5.59436 5.65381 5.78598 5.85629 5.93484 5.96964 6.18174 6.29406 6.53959 6.55619 6.66816 6.85745 7.36130 7.50748 7.60448 8.62976 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.001426 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.952092 B =19635.476630 C =20049.641070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.239 4.239 12 C -0.054 4.054 13 C -0.149 4.149 14 C 0.119 3.881 15 N -0.676 5.676 16 C 0.070 3.930 17 H 0.099 0.901 18 C -0.122 4.122 19 C 0.122 3.878 20 H 0.090 0.910 21 N -0.706 5.706 22 C 0.502 3.498 23 O -0.562 6.562 24 C -0.157 4.157 25 C 0.505 3.495 26 N -0.838 5.838 27 O -0.572 6.572 28 C -0.171 4.171 29 C -0.061 4.061 30 C -0.192 4.192 31 H 0.284 0.716 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.348 0.652 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.418 0.582 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.420 0.580 43 H 0.405 0.595 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.153 0.847 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.233 -18.060 -17.868 33.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.258 4.258 12 C -0.073 4.073 13 C -0.150 4.150 14 C -0.009 4.009 15 N -0.307 5.307 16 C -0.041 4.041 17 H 0.117 0.883 18 C -0.161 4.161 19 C 0.016 3.984 20 H 0.108 0.892 21 N -0.359 5.359 22 C 0.288 3.712 23 O -0.439 6.439 24 C -0.199 4.199 25 C 0.289 3.711 26 N -0.404 5.404 27 O -0.450 6.450 28 C -0.212 4.212 29 C -0.079 4.079 30 C -0.211 4.211 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.148 0.852 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.167 0.833 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.256 0.744 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.252 0.748 43 H 0.236 0.764 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.170 0.830 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.923 -18.852 -16.575 32.679 hybrid contribution 0.353 1.099 -0.184 1.169 sum 21.276 -17.752 -16.758 32.383 Atomic orbital electron populations 1.69734 1.06921 1.29564 1.50236 1.25280 0.95872 1.02144 0.95538 0.85207 0.78751 0.77382 0.79293 1.18987 1.19269 1.18764 1.20703 0.78165 0.96082 1.52620 0.90276 1.83511 1.21176 1.27564 1.83149 1.19705 0.93309 0.85004 0.94992 1.21281 1.00078 0.93344 1.11120 1.20882 0.94801 0.95810 0.95761 1.19680 0.92946 0.95431 1.06968 1.20671 0.98385 0.92307 0.89540 1.60432 1.56324 1.04185 1.09743 1.22818 0.91575 0.91498 0.98197 0.88264 1.23397 0.94224 1.00108 0.98323 1.22198 0.94777 0.98334 0.83078 0.89150 1.45831 1.32859 1.43962 1.13237 1.20806 0.80200 0.79582 0.90646 1.90859 1.59388 1.40281 1.53325 1.21675 0.98854 1.03718 0.95617 1.20645 0.84378 0.83108 0.82953 1.43714 1.36878 1.47116 1.12659 1.90910 1.67365 1.47335 1.39359 1.24150 0.98126 0.99133 0.99788 1.20952 1.00212 0.90080 0.96669 1.20504 0.90440 0.99831 1.10356 0.90606 0.87750 0.85230 0.90317 0.93261 0.83274 0.88081 0.90635 0.74392 0.81871 0.82001 0.74783 0.76406 0.92188 0.88443 0.82988 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 13.96 21.61 0.30 -54.90 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 45.25 28.62 68.60 1.96 47.22 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.40 -23.60 9.95 67.92 0.68 -22.93 16 8 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 9 O -0.25 -13.37 8.59 -22.76 -0.20 -13.56 16 10 C 0.12 5.50 6.65 22.58 0.15 5.65 16 11 C -0.24 -10.45 9.17 22.39 0.21 -10.25 16 12 C -0.05 -1.84 9.69 22.25 0.22 -1.62 16 13 C -0.15 -4.16 5.40 -19.84 -0.11 -4.27 16 14 C 0.12 2.39 5.65 85.55 0.48 2.87 16 15 N -0.68 -11.87 6.61 -492.86 -3.26 -15.13 16 16 C 0.07 0.99 4.18 45.45 0.19 1.18 16 17 H 0.10 1.43 7.87 -2.39 -0.02 1.41 16 18 C -0.12 -1.46 7.63 31.12 0.24 -1.22 16 19 C 0.12 1.70 4.24 45.52 0.19 1.89 16 20 H 0.09 1.75 7.46 -2.39 -0.02 1.73 16 21 N -0.71 -7.23 5.35 -440.04 -2.36 -9.59 16 22 C 0.50 8.06 7.82 87.66 0.69 8.75 16 23 O -0.56 -16.66 13.78 20.41 0.28 -16.38 16 24 C -0.16 -0.82 6.19 29.10 0.18 -0.64 16 25 C 0.51 6.93 8.09 87.66 0.71 7.64 16 26 N -0.84 -3.22 8.87 -173.53 -1.54 -4.76 16 27 O -0.57 -16.36 15.02 20.39 0.31 -16.05 16 28 C -0.17 -2.27 7.50 31.12 0.23 -2.04 16 29 C -0.06 -1.72 9.69 22.25 0.22 -1.50 16 30 C -0.19 -7.07 9.99 22.39 0.22 -6.84 16 31 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.10 5.09 5.64 -2.91 -0.02 5.07 16 33 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 34 H 0.08 1.55 8.07 -2.39 -0.02 1.53 16 35 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 36 H 0.35 5.73 8.19 -89.69 -0.73 4.99 16 37 H 0.10 1.05 8.12 -2.38 -0.02 1.03 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.42 1.19 8.73 -92.70 -0.81 0.38 16 40 H 0.16 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.16 -0.42 8.14 -2.38 -0.02 -0.44 16 42 H 0.42 -1.94 8.83 -92.71 -0.82 -2.76 16 43 H 0.41 1.68 8.93 -92.71 -0.83 0.85 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 45 H 0.10 1.10 7.83 -2.39 -0.02 1.08 16 46 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 47 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -89.39 397.69 -1.67 -91.06 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -2.13 Total: 14.37 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 4.96 Total: -22.28 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -6.85 Total: -84.37 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: 0.39 Total: -46.00 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.96 Total: 47.22 kcal Total: -89.39 -1.67 -91.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713188504.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.832 kcal (2) G-P(sol) polarization free energy of solvation -89.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds