Wall clock time and date at job start Wed Apr 1 2020 04:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48500 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47078 * 300.00301 * 3 2 1 6 6 H 1.48506 * 109.47288 * 60.00153 * 3 2 1 7 7 C 1.38803 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99968 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00441 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00534 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47193 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.81120 * 51.66846 * 11 10 9 13 13 C 1.54885 * 110.75790 * 288.33261 * 11 10 9 14 14 C 1.54264 * 104.19513 * 203.74233 * 13 11 10 15 15 C 1.53876 * 106.59899 * 23.61180 * 14 13 11 16 16 C 1.54272 * 106.59670 * 359.97438 * 15 14 13 17 17 H 1.08998 * 110.48056 * 95.20591 * 16 15 14 18 18 N 1.46503 * 110.48332 * 217.71199 * 16 15 14 19 19 C 1.34770 * 120.00037 * 273.54272 * 18 16 15 20 20 O 1.21554 * 120.00364 * 0.02562 * 19 18 16 21 21 C 1.47880 * 120.00055 * 180.02562 * 19 18 16 22 22 C 1.39278 * 119.61242 * 180.02562 * 21 19 18 23 23 C 1.38535 * 119.12525 * 180.02562 * 22 21 19 24 24 C 1.38913 * 118.53503 * 359.97438 * 23 22 21 25 25 C 1.39717 * 119.43297 * 359.89801 * 24 23 22 26 26 N 1.31998 * 120.36534 * 0.16872 * 25 24 23 27 27 O 1.35997 * 120.44772 * 180.21876 * 25 24 23 28 28 C 1.43134 * 116.71362 * 342.55875 * 27 25 24 29 29 C 1.53466 * 108.33588 * 46.49746 * 28 27 25 30 30 O 1.35781 * 119.57024 * 179.71610 * 24 23 22 31 31 H 0.96992 * 120.00082 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99620 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.46478 * 60.00417 * 10 9 7 34 34 H 1.08994 * 109.47076 * 300.00454 * 10 9 7 35 35 H 1.08997 * 110.49127 * 85.06414 * 13 11 10 36 36 H 1.09000 * 110.60110 * 322.47683 * 13 11 10 37 37 H 1.08998 * 110.03352 * 264.32530 * 14 13 11 38 38 H 1.09005 * 110.03261 * 142.89447 * 14 13 11 39 39 H 1.09002 * 110.03153 * 240.71610 * 15 14 13 40 40 H 1.08998 * 110.07642 * 119.30324 * 15 14 13 41 41 H 0.97000 * 119.99387 * 93.55335 * 18 16 15 42 42 H 1.08004 * 120.43461 * 0.03972 * 22 21 19 43 43 H 1.08003 * 120.72958 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.69404 * 286.78524 * 28 27 25 45 45 H 1.09000 * 109.72403 * 166.22351 * 28 27 25 46 46 H 1.09003 * 109.71036 * 59.79509 * 29 28 27 47 47 H 1.08993 * 109.71474 * 180.42806 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 1 0.3324 -4.7033 -0.8007 13 6 0.3606 -4.9413 1.3733 14 6 -0.0925 -6.4145 1.4374 15 6 0.8254 -7.1986 0.4833 16 6 1.8038 -6.1743 -0.1279 17 1 2.7369 -6.1553 0.4352 18 7 2.0621 -6.4886 -1.5353 19 6 3.0356 -7.3609 -1.8633 20 8 3.6992 -7.8873 -0.9915 21 6 3.2967 -7.6777 -3.2840 22 6 4.3044 -8.5807 -3.6138 23 6 4.5407 -8.8697 -4.9479 24 6 3.7586 -8.2446 -5.9109 25 6 2.7620 -7.3506 -5.5116 26 7 2.5660 -7.0983 -4.2308 27 8 1.9815 -6.7305 -6.4367 28 6 2.4614 -6.7269 -7.7851 29 6 2.9307 -8.1457 -8.1343 30 8 3.9760 -8.5081 -7.2251 31 1 -0.4850 0.8400 0.0004 32 1 0.3558 -2.3881 -0.0005 33 1 2.6849 -3.7144 0.8895 34 1 2.6850 -3.7144 -0.8904 35 1 -0.5006 -4.2749 1.4214 36 1 1.0577 -4.7210 2.1818 37 1 -1.1295 -6.5007 1.1129 38 1 0.0138 -6.7940 2.4537 39 1 0.2338 -7.6653 -0.3044 40 1 1.3773 -7.9590 1.0357 41 1 1.5324 -6.0687 -2.2310 42 1 4.8937 -9.0496 -2.8397 43 1 5.3158 -9.5657 -5.2330 44 1 3.2956 -6.0313 -7.8763 45 1 1.6593 -6.4288 -8.4603 46 1 2.0988 -8.8430 -8.0349 47 1 3.3086 -8.1669 -9.1564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715566888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:06 Heat of formation + Delta-G solvation = -59.454187 kcal Electronic energy + Delta-G solvation = -30199.193799 eV Core-core repulsion = 25961.935797 eV Total energy + Delta-G solvation = -4237.258002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94065 -40.19908 -38.81907 -37.85219 -37.62982 -34.42716 -33.69364 -32.51000 -31.85355 -31.34590 -29.44249 -28.53144 -27.52307 -25.65215 -24.70634 -24.27744 -22.52444 -21.99173 -21.01476 -20.17227 -19.74969 -19.12968 -18.34584 -18.07084 -17.34948 -16.84825 -16.36222 -16.21352 -15.53436 -15.14298 -15.02576 -14.86109 -14.71025 -14.67117 -14.39631 -13.94413 -13.80052 -13.59544 -13.33929 -13.14453 -12.96459 -12.82263 -12.17128 -12.06895 -11.95844 -11.83040 -11.60096 -11.22319 -10.90860 -10.86272 -10.72119 -10.44790 -10.34295 -10.26327 -10.16978 -9.93508 -9.91134 -9.69768 -9.63142 -8.94918 -8.81888 -8.63731 -6.85272 -5.71366 -2.99159 0.30073 0.78071 2.17169 2.46343 2.62664 3.14038 3.46731 3.51758 3.52509 3.54752 3.56362 3.94133 4.16979 4.29271 4.38719 4.55594 4.61354 4.66983 4.80332 4.89360 4.90374 4.93757 4.98572 5.11070 5.27923 5.52441 5.56370 5.61635 5.70253 5.71036 5.82070 5.86849 5.89371 6.01472 6.13498 6.14047 6.25676 6.30663 6.37355 6.55287 6.62150 6.64663 6.67113 6.86160 6.97592 7.34549 7.66030 7.76169 8.20418 8.47874 9.59128 10.17594 10.52791 11.51714 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.002732 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.534420 B =10244.610655 C =12201.446769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.082 0.918 13 C -0.111 4.111 14 C -0.122 4.122 15 C -0.132 4.132 16 C 0.145 3.855 17 H 0.096 0.904 18 N -0.695 5.695 19 C 0.575 3.425 20 O -0.535 6.535 21 C 0.090 3.910 22 C -0.105 4.105 23 C -0.081 4.081 24 C 0.030 3.970 25 C 0.264 3.736 26 N -0.440 5.440 27 O -0.290 6.290 28 C 0.025 3.975 29 C 0.017 3.983 30 O -0.300 6.300 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.413 0.587 42 H 0.161 0.839 43 H 0.155 0.845 44 H 0.084 0.916 45 H 0.132 0.868 46 H 0.083 0.917 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -22.524 -14.921 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.034 3.966 11 C -0.121 4.121 12 H 0.100 0.900 13 C -0.149 4.149 14 C -0.160 4.160 15 C -0.171 4.171 16 C 0.040 3.960 17 H 0.114 0.886 18 N -0.345 5.345 19 C 0.360 3.640 20 O -0.411 6.411 21 C -0.048 4.048 22 C -0.127 4.127 23 C -0.107 4.107 24 C -0.018 4.018 25 C 0.081 3.919 26 N -0.163 5.163 27 O -0.199 6.199 28 C -0.052 4.052 29 C -0.058 4.058 30 O -0.212 6.212 31 H 0.063 0.937 32 H 0.217 0.783 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.250 0.750 42 H 0.178 0.822 43 H 0.173 0.827 44 H 0.102 0.898 45 H 0.150 0.850 46 H 0.101 0.899 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.420 -22.172 -14.146 26.669 hybrid contribution 0.416 0.715 -1.007 1.303 sum 4.836 -21.457 -15.152 26.709 Atomic orbital electron populations 1.69670 1.05047 1.25402 1.58183 1.24719 0.95521 0.97602 1.03273 0.86132 0.78816 0.84241 0.77128 1.20599 1.21946 1.21916 1.19280 0.91049 0.84214 1.42077 0.91246 1.42332 1.05833 0.99882 1.89406 1.20648 0.92940 0.85157 0.97883 1.22554 0.97944 0.93097 0.98537 0.89961 1.22285 1.00757 0.95216 0.96593 1.22120 0.99007 0.95878 0.99042 1.22515 0.97474 0.98060 0.99032 1.21996 0.99210 0.94244 0.80574 0.88564 1.45946 1.35428 1.43617 1.09462 1.17610 0.80527 0.79797 0.86111 1.90792 1.49229 1.52521 1.48598 1.20884 0.94523 0.96694 0.92660 1.21934 0.97290 0.97143 0.96293 1.20906 1.00078 0.99421 0.90308 1.19948 0.98818 0.97654 0.85421 1.19274 0.91966 0.92399 0.88255 1.66623 1.27357 1.23809 0.98528 1.86280 1.43900 1.72971 1.16771 1.23798 1.02927 0.97277 0.81158 1.23781 0.91437 0.96282 0.94307 1.86268 1.42247 1.79520 1.13207 0.93659 0.78263 0.96149 0.96387 0.90750 0.91159 0.91923 0.91946 0.91678 0.91452 0.75042 0.82163 0.82738 0.89760 0.84983 0.89866 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.23 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -18.81 5.52 -59.91 -0.33 -19.14 16 10 C 0.16 3.36 5.70 -4.04 -0.02 3.34 16 11 C -0.10 -1.69 2.50 -88.64 -0.22 -1.91 16 12 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 13 C -0.11 -1.70 6.20 -25.08 -0.16 -1.85 16 14 C -0.12 -1.54 6.80 -25.61 -0.17 -1.72 16 15 C -0.13 -1.71 6.53 -25.61 -0.17 -1.88 16 16 C 0.14 2.13 2.60 -66.28 -0.17 1.96 16 17 H 0.10 1.54 7.57 -51.93 -0.39 1.15 16 18 N -0.69 -10.08 5.10 -53.14 -0.27 -10.35 16 19 C 0.58 8.56 7.79 -12.32 -0.10 8.46 16 20 O -0.53 -8.93 16.01 5.32 0.09 -8.84 16 21 C 0.09 1.20 6.74 -83.08 -0.56 0.64 16 22 C -0.11 -1.12 9.62 -39.09 -0.38 -1.49 16 23 C -0.08 -0.74 10.08 -39.22 -0.40 -1.13 16 24 C 0.03 0.31 6.51 -38.78 -0.25 0.06 16 25 C 0.26 3.23 7.55 -16.93 -0.13 3.10 16 26 N -0.44 -6.08 9.55 -9.70 -0.09 -6.18 16 27 O -0.29 -3.23 10.51 -32.34 -0.34 -3.57 16 28 C 0.02 0.15 7.24 37.40 0.27 0.42 16 29 C 0.02 0.08 7.26 37.40 0.27 0.36 16 30 O -0.30 -2.51 10.42 -31.66 -0.33 -2.84 16 31 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 33 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.12 7.94 -51.93 -0.41 0.70 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.82 8.04 -51.93 -0.42 0.40 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.41 5.90 7.85 -40.82 -0.32 5.58 16 42 H 0.16 1.49 7.63 -52.48 -0.40 1.09 16 43 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.13 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 389.85 15.07 5.87 5.87 Total: -1.00 -34.94 389.85 -8.99 -43.93 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.86 Total: 10.23 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.43 Total: 0.91 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.03 Total: -63.53 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.58 Total: -15.26 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.94 -8.99 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715566888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.525 kcal (2) G-P(sol) polarization free energy of solvation -34.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds