Wall clock time and date at job start Wed Apr 1 2020 04:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48500 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47078 * 300.00301 * 3 2 1 6 6 H 1.48506 * 109.47288 * 60.00153 * 3 2 1 7 7 C 1.38803 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99968 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00441 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00534 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47193 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.81120 * 51.66846 * 11 10 9 13 13 C 1.54885 * 110.75790 * 288.33261 * 11 10 9 14 14 C 1.54264 * 104.19513 * 203.74233 * 13 11 10 15 15 C 1.53876 * 106.59899 * 23.61180 * 14 13 11 16 16 C 1.54272 * 106.59670 * 359.97438 * 15 14 13 17 17 H 1.08998 * 110.48056 * 95.20591 * 16 15 14 18 18 N 1.46503 * 110.48332 * 217.71199 * 16 15 14 19 19 C 1.34770 * 120.00037 * 273.54272 * 18 16 15 20 20 O 1.21554 * 120.00364 * 0.02562 * 19 18 16 21 21 C 1.47880 * 120.00055 * 180.02562 * 19 18 16 22 22 C 1.39278 * 119.61242 * 180.02562 * 21 19 18 23 23 C 1.38535 * 119.12525 * 180.02562 * 22 21 19 24 24 C 1.38913 * 118.53503 * 359.97438 * 23 22 21 25 25 C 1.39717 * 119.43297 * 359.89801 * 24 23 22 26 26 N 1.31998 * 120.36534 * 0.16872 * 25 24 23 27 27 O 1.35997 * 120.44772 * 180.21876 * 25 24 23 28 28 C 1.43134 * 116.71362 * 342.55875 * 27 25 24 29 29 C 1.53466 * 108.33588 * 46.49746 * 28 27 25 30 30 O 1.35781 * 119.57024 * 179.71610 * 24 23 22 31 31 H 0.96992 * 120.00082 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99620 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.46478 * 60.00417 * 10 9 7 34 34 H 1.08994 * 109.47076 * 300.00454 * 10 9 7 35 35 H 1.08997 * 110.49127 * 85.06414 * 13 11 10 36 36 H 1.09000 * 110.60110 * 322.47683 * 13 11 10 37 37 H 1.08998 * 110.03352 * 264.32530 * 14 13 11 38 38 H 1.09005 * 110.03261 * 142.89447 * 14 13 11 39 39 H 1.09002 * 110.03153 * 240.71610 * 15 14 13 40 40 H 1.08998 * 110.07642 * 119.30324 * 15 14 13 41 41 H 0.97000 * 119.99387 * 93.55335 * 18 16 15 42 42 H 1.08004 * 120.43461 * 0.03972 * 22 21 19 43 43 H 1.08003 * 120.72958 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.69404 * 286.78524 * 28 27 25 45 45 H 1.09000 * 109.72403 * 166.22351 * 28 27 25 46 46 H 1.09003 * 109.71036 * 59.79509 * 29 28 27 47 47 H 1.08993 * 109.71474 * 180.42806 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 1 0.3324 -4.7033 -0.8007 13 6 0.3606 -4.9413 1.3733 14 6 -0.0925 -6.4145 1.4374 15 6 0.8254 -7.1986 0.4833 16 6 1.8038 -6.1743 -0.1279 17 1 2.7369 -6.1553 0.4352 18 7 2.0621 -6.4886 -1.5353 19 6 3.0356 -7.3609 -1.8633 20 8 3.6992 -7.8873 -0.9915 21 6 3.2967 -7.6777 -3.2840 22 6 4.3044 -8.5807 -3.6138 23 6 4.5407 -8.8697 -4.9479 24 6 3.7586 -8.2446 -5.9109 25 6 2.7620 -7.3506 -5.5116 26 7 2.5660 -7.0983 -4.2308 27 8 1.9815 -6.7305 -6.4367 28 6 2.4614 -6.7269 -7.7851 29 6 2.9307 -8.1457 -8.1343 30 8 3.9760 -8.5081 -7.2251 31 1 -0.4850 0.8400 0.0004 32 1 0.3558 -2.3881 -0.0005 33 1 2.6849 -3.7144 0.8895 34 1 2.6850 -3.7144 -0.8904 35 1 -0.5006 -4.2749 1.4214 36 1 1.0577 -4.7210 2.1818 37 1 -1.1295 -6.5007 1.1129 38 1 0.0138 -6.7940 2.4537 39 1 0.2338 -7.6653 -0.3044 40 1 1.3773 -7.9590 1.0357 41 1 1.5324 -6.0687 -2.2310 42 1 4.8937 -9.0496 -2.8397 43 1 5.3158 -9.5657 -5.2330 44 1 3.2956 -6.0313 -7.8763 45 1 1.6593 -6.4288 -8.4603 46 1 2.0988 -8.8430 -8.0349 47 1 3.3086 -8.1669 -9.1564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715566888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:05 Heat of formation + Delta-G solvation = -85.726245 kcal Electronic energy + Delta-G solvation = -30200.333041 eV Core-core repulsion = 25961.935797 eV Total energy + Delta-G solvation = -4238.397243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.67407 -41.26028 -39.81286 -38.81337 -38.52100 -36.32448 -34.88522 -33.37529 -33.29683 -32.51631 -30.27351 -30.10766 -28.62127 -26.53783 -26.15857 -25.39009 -23.98690 -23.10750 -21.96808 -21.46795 -20.86529 -20.00274 -19.29335 -19.04909 -18.79710 -18.01044 -17.56989 -16.97072 -16.65976 -16.22892 -16.13275 -15.86576 -15.83044 -15.58376 -15.51741 -15.16784 -15.06521 -14.83833 -14.64763 -14.47078 -14.27709 -13.89334 -13.55552 -13.13440 -13.11652 -12.85011 -12.73388 -12.50430 -12.37636 -12.18319 -12.13098 -12.05179 -11.90648 -11.62101 -11.59771 -11.45443 -11.28497 -10.94894 -10.72633 -10.53852 -10.12797 -9.45964 -9.00403 -7.95831 -5.24505 -0.56833 -0.01057 1.44202 1.45974 1.46794 1.57122 1.59844 1.90743 2.08077 2.54775 2.62746 2.86814 3.25352 3.37045 3.44528 3.47929 3.66210 3.79048 3.87332 3.90444 3.98205 4.04532 4.15231 4.17895 4.41707 4.45957 4.49818 4.52031 4.55528 4.56673 4.58310 4.66529 4.71892 4.82753 4.95790 5.03517 5.11389 5.12994 5.20794 5.24306 5.30659 5.46237 5.46352 5.51306 5.56196 5.95811 6.26469 6.34876 6.65401 7.06223 7.33128 8.07669 8.33492 9.27694 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.002732 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.534420 B =10244.610655 C =12201.446769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.739 5.739 10 C 0.164 3.836 11 C -0.093 4.093 12 H 0.079 0.921 13 C -0.109 4.109 14 C -0.111 4.111 15 C -0.123 4.123 16 C 0.150 3.850 17 H 0.084 0.916 18 N -0.696 5.696 19 C 0.575 3.425 20 O -0.558 6.558 21 C 0.064 3.936 22 C -0.099 4.099 23 C -0.074 4.074 24 C 0.039 3.961 25 C 0.246 3.754 26 N -0.469 5.469 27 O -0.316 6.316 28 C 0.015 3.985 29 C 0.015 3.985 30 O -0.302 6.302 31 H 0.252 0.748 32 H 0.376 0.624 33 H 0.018 0.982 34 H 0.008 0.992 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.413 0.587 42 H 0.172 0.828 43 H 0.189 0.811 44 H 0.085 0.915 45 H 0.162 0.838 46 H 0.090 0.910 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -23.974 -16.420 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.037 3.963 11 C -0.112 4.112 12 H 0.097 0.903 13 C -0.147 4.147 14 C -0.149 4.149 15 C -0.162 4.162 16 C 0.046 3.954 17 H 0.102 0.898 18 N -0.345 5.345 19 C 0.360 3.640 20 O -0.437 6.437 21 C -0.073 4.073 22 C -0.120 4.120 23 C -0.099 4.099 24 C -0.011 4.011 25 C 0.063 3.937 26 N -0.192 5.192 27 O -0.226 6.226 28 C -0.060 4.060 29 C -0.059 4.059 30 O -0.215 6.215 31 H 0.061 0.939 32 H 0.208 0.792 33 H 0.036 0.964 34 H 0.026 0.974 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.250 0.750 42 H 0.190 0.810 43 H 0.207 0.793 44 H 0.103 0.897 45 H 0.179 0.821 46 H 0.108 0.892 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.276 -23.646 -15.662 28.849 hybrid contribution 0.184 1.146 -0.705 1.358 sum 5.460 -22.501 -16.368 28.355 Atomic orbital electron populations 1.69816 1.06458 1.26028 1.59406 1.25538 0.96450 1.00946 1.03592 0.85087 0.78093 0.79831 0.76828 1.19396 1.21842 1.21734 1.19628 0.91327 0.85522 1.41355 0.91227 1.42483 1.05618 1.00842 1.89276 1.20718 0.93588 0.84965 0.96992 1.22397 0.97056 0.92372 0.99406 0.90298 1.22238 0.99904 0.97227 0.95361 1.22060 0.99419 0.93344 1.00079 1.22450 0.97030 0.97514 0.99191 1.21866 0.98901 0.93732 0.80949 0.89839 1.45949 1.35579 1.43698 1.09251 1.17889 0.79907 0.79232 0.86925 1.90761 1.49982 1.53462 1.49524 1.20703 0.96287 0.98654 0.91647 1.22099 0.96308 0.96113 0.97491 1.21263 1.00179 0.99211 0.89273 1.20045 0.97769 0.96613 0.86629 1.19488 0.92878 0.93296 0.88044 1.66474 1.28335 1.24831 0.99586 1.86241 1.44682 1.73159 1.18553 1.24197 1.04214 0.98262 0.79326 1.24135 0.91229 0.95431 0.95155 1.86269 1.43525 1.79247 1.12475 0.93919 0.79159 0.96401 0.97376 0.92102 0.91849 0.90677 0.90157 0.90979 0.90795 0.75039 0.81029 0.79334 0.89721 0.82064 0.89164 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.04 13.06 21.65 0.28 -59.76 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 47.35 29.55 68.60 2.03 49.38 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.74 -39.10 5.52 -343.45 -1.90 -41.00 16 10 C 0.16 7.05 5.70 86.38 0.49 7.54 16 11 C -0.09 -3.14 2.50 -9.51 -0.02 -3.16 16 12 H 0.08 2.73 8.02 -2.39 -0.02 2.71 16 13 C -0.11 -3.37 6.20 31.67 0.20 -3.17 16 14 C -0.11 -2.63 6.80 31.32 0.21 -2.42 16 15 C -0.12 -3.06 6.53 31.32 0.20 -2.85 16 16 C 0.15 4.49 2.60 46.06 0.12 4.61 16 17 H 0.08 2.73 7.57 -2.39 -0.02 2.71 16 18 N -0.70 -20.73 5.10 -440.32 -2.25 -22.98 16 19 C 0.57 17.48 7.79 86.80 0.68 18.15 16 20 O -0.56 -18.88 16.01 -3.88 -0.06 -18.94 16 21 C 0.06 1.72 6.74 41.79 0.28 2.00 16 22 C -0.10 -2.02 9.62 22.59 0.22 -1.80 16 23 C -0.07 -1.19 10.08 22.50 0.23 -0.97 16 24 C 0.04 0.74 6.51 22.79 0.15 0.88 16 25 C 0.25 5.98 7.55 85.03 0.64 6.63 16 26 N -0.47 -13.27 9.55 -297.43 -2.84 -16.11 16 27 O -0.32 -6.98 10.51 -81.47 -0.86 -7.84 16 28 C 0.01 0.15 7.24 72.14 0.52 0.68 16 29 C 0.01 0.10 7.26 72.14 0.52 0.63 16 30 O -0.30 -4.32 10.42 -79.05 -0.82 -5.14 16 31 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.38 20.80 7.67 -92.71 -0.71 20.08 16 33 H 0.02 0.79 7.99 -2.39 -0.02 0.77 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 36 H 0.06 2.03 7.94 -2.39 -0.02 2.01 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.07 1.71 8.04 -2.39 -0.02 1.69 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.41 12.31 7.85 -92.71 -0.73 11.58 16 42 H 0.17 3.01 7.63 -2.91 -0.02 2.99 16 43 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.17 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: -1.00 -76.66 389.85 -1.09 -77.75 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -0.43 Total: 35.23 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 5.75 Total: 9.40 kcal Atomic # 7 Polarization: -133.14 SS G_CDS: -6.70 Total: -139.85 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.74 Total: -31.92 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -76.66 -1.09 -77.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715566888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.972 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds