Wall clock time and date at job start Wed Apr 1 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99623 * 2 1 4 4 H 1.48504 * 109.47528 * 270.00461 * 3 2 1 5 5 H 1.48499 * 109.47391 * 30.00698 * 3 2 1 6 6 H 1.48498 * 109.46899 * 150.00364 * 3 2 1 7 7 C 1.38807 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00570 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99519 * 359.97438 * 7 2 1 10 10 C 1.46672 * 125.33748 * 180.02562 * 9 7 2 11 11 C 1.53716 * 107.94668 * 179.45867 * 10 9 7 12 12 H 1.09004 * 113.06384 * 220.00237 * 11 10 9 13 13 C 1.53686 * 109.34296 * 93.74778 * 11 10 9 14 14 N 1.46641 * 108.00986 * 232.44671 * 13 11 10 15 15 C 1.34784 * 125.32784 * 179.18490 * 14 13 11 16 16 O 1.21274 * 120.00120 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99887 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.46846 * 179.97438 * 17 15 14 19 19 N 1.46498 * 109.46571 * 179.97438 * 18 17 15 20 20 C 1.34784 * 119.99612 * 180.02562 * 19 18 17 21 21 O 1.21693 * 120.00067 * 359.97438 * 20 19 18 22 22 C 1.46656 * 119.99546 * 180.02562 * 20 19 18 23 23 C 1.36554 * 125.98532 * 179.71530 * 22 20 19 24 24 C 1.40363 * 106.70827 * 179.85087 * 23 22 20 25 25 C 1.35127 * 107.11389 * 0.40875 * 24 23 22 26 26 O 1.33935 * 108.77010 * 359.74567 * 25 24 23 27 27 C 1.47612 * 109.22675 * 358.47507 * 14 13 11 28 28 C 1.53926 * 106.28249 * 19.40962 * 27 14 13 29 29 H 1.09002 * 113.01217 * 208.13571 * 28 27 14 30 30 C 1.46769 * 125.34195 * 0.02562 * 9 7 2 31 31 H 0.96997 * 120.00291 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.77107 * 59.83478 * 10 9 7 33 33 H 1.09002 * 109.77209 * 299.08006 * 10 9 7 34 34 H 1.09002 * 109.75973 * 352.08572 * 13 11 10 35 35 H 1.08996 * 109.76718 * 112.80373 * 13 11 10 36 36 H 1.08999 * 109.46797 * 300.00189 * 17 15 14 37 37 H 1.08997 * 109.46946 * 59.99865 * 17 15 14 38 38 H 1.08997 * 109.47050 * 299.99648 * 18 17 15 39 39 H 1.08997 * 109.47265 * 60.00296 * 18 17 15 40 40 H 0.96997 * 120.00758 * 0.02562 * 19 18 17 41 41 H 1.08001 * 126.64461 * 359.95616 * 23 22 20 42 42 H 1.07995 * 126.44340 * 180.15452 * 24 23 22 43 43 H 1.07998 * 125.61520 * 179.78234 * 25 24 23 44 44 H 1.09000 * 111.08876 * 259.76018 * 27 14 13 45 45 H 1.08999 * 109.35715 * 138.12402 * 27 14 13 46 46 H 1.08994 * 110.03381 * 79.22073 * 30 9 7 47 47 H 1.09003 * 110.02702 * 317.79886 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0467 -1.4001 5 1 1.4477 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 1.9377 -3.7209 -0.0005 11 6 0.8064 -4.7615 0.0133 12 1 1.0178 -5.6135 0.6595 13 6 0.4836 -5.1816 -1.4294 14 7 -0.9595 -5.0221 -1.6358 15 6 -1.6152 -5.2776 -2.7853 16 8 -1.0056 -5.6731 -3.7562 17 6 -3.1061 -5.0716 -2.8641 18 6 -3.5970 -5.4308 -4.2680 19 7 -5.0463 -5.2312 -4.3443 20 6 -5.7021 -5.4867 -5.4937 21 8 -5.0903 -5.8828 -6.4683 22 6 -7.1529 -5.2864 -5.5703 23 6 -7.9356 -5.5006 -6.6685 24 6 -9.2514 -5.1871 -6.2936 25 6 -9.2134 -4.7914 -5.0022 26 8 -7.9472 -4.8526 -4.5698 27 6 -1.5812 -4.5544 -0.3814 28 6 -0.4441 -3.9585 0.4679 29 1 -0.6325 -4.0255 1.5394 30 6 -0.1356 -2.5246 -0.0005 31 1 -0.4850 0.8400 0.0004 32 1 2.5600 -3.8409 0.8863 33 1 2.5447 -3.8480 -0.8970 34 1 1.0282 -4.5471 -2.1286 35 1 0.7647 -6.2236 -1.5815 36 1 -3.6002 -5.7099 -2.1316 37 1 -3.3403 -4.0282 -2.6535 38 1 -3.1029 -4.7922 -5.0001 39 1 -3.3627 -6.4742 -4.4789 40 1 -5.5340 -4.9152 -3.5677 41 1 -7.6063 -5.8461 -7.6373 42 1 -10.1286 -5.2465 -6.9208 43 1 -10.0640 -4.4781 -4.4151 44 1 -2.0535 -5.3785 0.1533 45 1 -2.3193 -3.7853 -0.6089 46 1 -0.5252 -2.3687 -1.0065 47 1 -0.5779 -1.8040 0.6874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717014011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:03 Heat of formation + Delta-G solvation = -45.415629 kcal Electronic energy + Delta-G solvation = -29835.410960 eV Core-core repulsion = 25598.761716 eV Total energy + Delta-G solvation = -4236.649244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.63960 -41.55670 -40.63962 -39.65516 -36.65458 -36.41631 -34.18248 -34.04900 -32.62564 -31.63390 -31.31435 -30.44067 -27.51287 -27.15823 -25.72032 -24.31439 -23.30133 -22.66092 -21.90242 -21.54900 -20.83100 -20.36286 -19.45549 -18.86677 -18.29774 -17.58546 -17.35886 -17.31536 -16.90025 -16.72182 -16.39501 -16.07060 -15.76441 -15.48679 -15.20861 -14.91346 -14.75382 -14.24974 -14.12890 -13.96998 -13.91878 -13.61781 -13.55209 -13.42149 -13.23611 -13.14097 -12.97402 -12.76434 -12.71345 -12.55493 -12.00232 -11.85791 -11.80097 -11.65324 -11.56786 -11.24902 -11.05531 -11.00186 -10.70654 -10.41825 -9.66110 -9.63324 -8.86970 -7.81242 -5.21317 0.00033 1.42535 1.44820 1.46338 1.51504 1.54622 1.57223 1.90290 2.04454 2.29967 2.48275 3.29461 3.37361 3.49875 3.58915 3.75389 3.80046 3.90915 3.95293 3.96244 4.02119 4.12847 4.27478 4.37008 4.41215 4.57287 4.61025 4.68056 4.73892 4.79375 4.81151 4.87476 4.91808 4.95896 4.96056 4.99279 5.09437 5.13385 5.25700 5.39365 5.43289 5.47487 5.68809 5.81423 5.83640 6.29582 6.34504 6.50846 6.92058 7.08243 7.13042 7.80897 8.41040 9.22536 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.002103 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.034097 B =13311.553070 C =14453.342948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.064 4.064 3 Si 0.975 3.025 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.136 3.864 11 C -0.092 4.092 12 H 0.134 0.866 13 C 0.121 3.879 14 N -0.610 5.610 15 C 0.524 3.476 16 O -0.591 6.591 17 C -0.134 4.134 18 C 0.142 3.858 19 N -0.704 5.704 20 C 0.599 3.401 21 O -0.564 6.564 22 C -0.110 4.110 23 C -0.127 4.127 24 C -0.236 4.236 25 C 0.015 3.985 26 O -0.168 6.168 27 C 0.114 3.886 28 C -0.113 4.113 29 H 0.121 0.879 30 C 0.178 3.822 31 H 0.247 0.753 32 H 0.035 0.965 33 H 0.014 0.986 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.421 0.579 41 H 0.156 0.844 42 H 0.183 0.817 43 H 0.257 0.743 44 H 0.115 0.885 45 H 0.083 0.917 46 H -0.019 1.019 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.950 -13.441 -1.123 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.220 1.220 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.352 5.352 10 C 0.010 3.990 11 C -0.111 4.111 12 H 0.152 0.848 13 C -0.002 4.002 14 N -0.343 5.343 15 C 0.314 3.686 16 O -0.473 6.473 17 C -0.173 4.173 18 C 0.018 3.982 19 N -0.355 5.355 20 C 0.387 3.613 21 O -0.445 6.445 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.255 4.255 25 C -0.054 4.054 26 O -0.063 6.063 27 C -0.007 4.007 28 C -0.133 4.133 29 H 0.139 0.861 30 C 0.053 3.947 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.032 0.968 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.259 0.741 41 H 0.173 0.827 42 H 0.200 0.800 43 H 0.273 0.727 44 H 0.133 0.867 45 H 0.101 0.899 46 H -0.001 1.001 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.093 -13.649 -2.053 24.377 hybrid contribution 0.719 1.440 -0.436 1.667 sum -19.375 -12.209 -2.488 23.036 Atomic orbital electron populations 1.70088 1.05909 1.25002 1.58404 1.25564 0.96720 1.00718 1.02694 0.85126 0.77848 0.79478 0.77165 1.22043 1.21583 1.19428 1.19404 0.90949 0.83945 1.42728 0.90545 1.44578 1.02940 1.00881 1.86769 1.21347 0.94847 0.84789 0.97972 1.22755 0.95262 0.98160 0.94901 0.84794 1.21763 0.81419 1.00549 0.96476 1.48528 1.08596 1.65145 1.12016 1.20599 0.90602 0.76620 0.80772 1.90708 1.70743 1.48992 1.36828 1.21726 0.90477 1.06703 0.98415 1.20885 0.78891 1.01863 0.96600 1.45682 1.08665 1.67121 1.14064 1.16808 0.84083 0.77276 0.83161 1.90883 1.67435 1.48636 1.37578 1.21682 0.91132 1.13643 0.89675 1.22278 0.93746 0.99700 0.99033 1.22225 0.97984 1.07797 0.97471 1.25424 0.84625 0.99289 0.96108 1.84055 1.18809 1.65577 1.37857 1.22318 0.95428 0.99867 0.83108 1.23204 0.94069 0.95059 1.00962 0.86132 1.21217 0.83601 0.93178 0.96669 0.94366 0.94694 0.96759 0.95090 0.90460 0.83999 0.86315 0.92945 0.91420 0.74077 0.82659 0.79976 0.72709 0.86685 0.89914 1.00144 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.97 10.16 21.65 0.22 -54.75 16 2 C -0.06 -3.60 5.48 84.86 0.47 -3.14 16 3 Si 0.98 45.65 29.55 68.60 2.03 47.67 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.24 -13.47 10.25 84.03 0.86 -12.61 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.63 -31.35 3.38 -697.61 -2.36 -33.71 16 10 C 0.14 5.34 6.62 86.59 0.57 5.92 16 11 C -0.09 -2.69 4.01 -9.49 -0.04 -2.73 16 12 H 0.13 2.86 8.14 -2.38 -0.02 2.84 16 13 C 0.12 3.84 6.21 86.58 0.54 4.38 16 14 N -0.61 -17.69 3.32 -815.47 -2.71 -20.40 16 15 C 0.52 15.79 7.84 87.66 0.69 16.48 16 16 O -0.59 -23.24 16.29 -3.01 -0.05 -23.29 16 17 C -0.13 -2.61 4.85 29.85 0.14 -2.47 16 18 C 0.14 3.42 4.96 86.38 0.43 3.85 16 19 N -0.70 -14.11 5.55 -467.11 -2.59 -16.71 16 20 C 0.60 15.23 7.79 86.44 0.67 15.90 16 21 O -0.56 -19.09 16.86 -4.32 -0.07 -19.16 16 22 C -0.11 -2.24 7.13 24.08 0.17 -2.07 16 23 C -0.13 -2.29 10.62 22.39 0.24 -2.06 16 24 C -0.24 -2.57 10.87 22.07 0.24 -2.33 16 25 C 0.01 0.12 12.08 67.10 0.81 0.93 16 26 O -0.17 -2.49 10.40 -5.04 -0.05 -2.54 16 27 C 0.11 2.62 5.86 86.48 0.51 3.13 16 28 C -0.11 -3.40 4.12 -9.32 -0.04 -3.44 16 29 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 30 C 0.18 8.11 4.94 86.65 0.43 8.53 16 31 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 32 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.01 0.60 7.44 -2.39 -0.02 0.58 16 34 H 0.03 1.23 7.29 -2.39 -0.02 1.22 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.12 2.06 7.89 -2.39 -0.02 2.04 16 38 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 39 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.42 5.60 8.23 -92.71 -0.76 4.84 16 41 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 42 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.26 -0.49 8.06 -2.91 -0.02 -0.51 16 44 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.08 1.85 7.44 -2.39 -0.02 1.83 16 46 H -0.02 -1.01 7.75 -2.39 -0.02 -1.03 16 47 H 0.06 3.10 6.19 -2.39 -0.01 3.09 16 Total: -1.00 -83.92 388.06 1.34 -82.58 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.23 Total: 12.00 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 6.69 Total: 28.30 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -7.44 Total: -125.57 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.17 Total: -44.99 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -83.92 1.34 -82.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717014011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.167 kcal (2) G-P(sol) polarization free energy of solvation -83.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds