Wall clock time and date at job start Wed Apr 1 2020 04:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00272 * 2 1 4 4 H 1.48491 * 109.47228 * 240.00018 * 3 2 1 5 5 H 1.48498 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46855 * 120.00236 * 3 2 1 7 7 C 1.38952 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00503 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99630 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99920 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99674 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99854 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46783 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99979 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47070 * 179.97438 * 14 13 12 16 16 C 1.53784 * 113.61271 * 174.99927 * 15 14 13 17 17 C 1.53784 * 87.08004 * 139.98590 * 16 15 14 18 18 N 1.46496 * 113.61682 * 89.11894 * 17 16 15 19 19 C 1.34779 * 120.00238 * 156.52743 * 18 17 16 20 20 O 1.21779 * 119.99666 * 359.97438 * 19 18 17 21 21 C 1.41545 * 120.00087 * 179.97438 * 19 18 17 22 22 C 1.35629 * 119.99876 * 188.43255 * 21 19 18 23 23 C 1.41600 * 119.99939 * 29.88642 * 22 21 19 24 24 C 1.37957 * 126.10277 * 186.15112 * 23 22 21 25 25 C 1.40314 * 106.52961 * 179.97438 * 24 23 22 26 26 C 1.35157 * 107.20583 * 359.97438 * 25 24 23 27 27 O 1.34019 * 109.03356 * 359.77278 * 26 25 24 28 28 C 1.53785 * 87.17178 * 334.52359 * 17 16 15 29 29 H 0.97009 * 119.99413 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00583 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47483 * 59.99730 * 12 10 9 32 32 H 1.08995 * 109.46650 * 299.98915 * 12 10 9 33 33 H 1.00903 * 110.99919 * 303.94534 * 13 12 10 34 34 H 1.08999 * 109.47096 * 60.00062 * 14 13 12 35 35 H 1.08993 * 109.46823 * 300.00174 * 14 13 12 36 36 H 1.09002 * 112.85135 * 43.80404 * 15 14 13 37 37 H 1.08998 * 113.61358 * 25.43244 * 16 15 14 38 38 H 1.09007 * 113.69076 * 254.54340 * 16 15 14 39 39 H 1.09004 * 113.60979 * 219.93574 * 17 16 15 40 40 H 0.97001 * 119.99623 * 336.52430 * 18 17 16 41 41 H 1.08004 * 119.99963 * 8.43102 * 21 19 18 42 42 H 1.07998 * 119.99664 * 209.88429 * 22 21 19 43 43 H 1.07999 * 126.73345 * 359.97438 * 24 23 22 44 44 H 1.08000 * 126.39511 * 179.97438 * 25 24 23 45 45 H 1.07994 * 125.48620 * 180.02562 * 26 25 24 46 46 H 1.08999 * 113.60675 * 140.02226 * 28 17 16 47 47 H 1.08994 * 113.61688 * 270.92933 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 1.4977 -7.2709 -0.0016 15 6 2.5225 -8.4069 -0.0028 16 6 1.8930 -9.8046 0.1200 17 6 2.9309 -10.2765 -0.9120 18 7 4.1873 -10.7343 -0.3137 19 6 4.9824 -11.5890 -0.9872 20 8 4.6561 -11.9812 -2.0930 21 6 6.1966 -12.0309 -0.4093 22 6 7.0769 -12.7509 -1.1484 23 6 7.1546 -12.5526 -2.5483 24 6 7.9117 -13.2920 -3.4332 25 6 7.6833 -12.7473 -4.7060 26 6 6.8163 -11.7219 -4.5524 27 8 6.4963 -11.6107 -3.2558 28 6 2.9806 -8.8235 -1.4133 29 1 -0.4850 0.8402 0.0004 30 1 0.3532 -2.3907 0.0002 31 1 0.6171 -4.9205 -0.8913 32 1 0.6166 -4.9209 0.8887 33 1 2.8328 -5.9122 -0.7831 34 1 0.8725 -7.3452 -0.8914 35 1 0.8731 -7.3454 0.8885 36 1 3.3448 -8.2358 0.6920 37 1 0.8654 -9.8538 -0.2401 38 1 2.0188 -10.2567 1.1039 39 1 2.5306 -10.9776 -1.6444 40 1 4.4469 -10.4221 0.5673 41 1 6.4221 -11.7947 0.6202 42 1 7.7185 -13.4754 -0.6691 43 1 8.5541 -14.1263 -3.1934 44 1 8.1190 -13.0845 -5.6350 45 1 6.4387 -11.0958 -5.3472 46 1 3.9847 -8.4831 -1.6662 47 1 2.2498 -8.6050 -2.1919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717380877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:52 Heat of formation + Delta-G solvation = -3.956050 kcal Electronic energy + Delta-G solvation = -28732.414111 eV Core-core repulsion = 24497.562689 eV Total energy + Delta-G solvation = -4234.851422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.69693 -40.47287 -38.83168 -38.12710 -35.22952 -34.33148 -33.85199 -33.16957 -33.14302 -31.20184 -29.30449 -28.34944 -25.97180 -25.68926 -24.60220 -23.52900 -22.02975 -21.92521 -21.46397 -19.74171 -19.47165 -19.06204 -18.19560 -17.86088 -16.84783 -16.33337 -16.09429 -16.06739 -15.53385 -15.25783 -15.03552 -14.75162 -14.48512 -14.42658 -14.01527 -13.87023 -13.61386 -13.50416 -13.14887 -12.98608 -12.94820 -12.77884 -12.57849 -12.44483 -12.25035 -11.68616 -11.52693 -11.47893 -11.02703 -10.92454 -10.62439 -10.55032 -10.43125 -10.23333 -10.18364 -10.11359 -10.02042 -9.48498 -9.14819 -8.43357 -8.13228 -8.01943 -7.93799 -6.40159 -3.80942 0.01356 1.93339 2.43988 2.83868 3.09510 3.18502 3.21211 3.26601 3.31194 3.93131 4.09309 4.28517 4.35006 4.42967 4.60699 4.61218 4.68693 4.72200 4.76711 4.88137 5.03120 5.16521 5.26819 5.27950 5.38530 5.42736 5.50707 5.54621 5.59539 5.64195 5.65553 5.69206 5.78697 5.82712 5.92166 5.94700 6.01874 6.05351 6.15378 6.20105 6.29864 6.50173 6.92295 7.27745 7.35613 7.56403 7.71956 8.08006 8.11109 8.63294 9.19425 9.56207 10.07992 10.77526 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.001596 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.952027 B =17541.968208 C =18590.327336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.068 3.932 15 C -0.105 4.105 16 C -0.140 4.140 17 C 0.123 3.877 18 N -0.710 5.710 19 C 0.545 3.455 20 O -0.529 6.529 21 C -0.232 4.232 22 C 0.017 3.983 23 C -0.009 4.009 24 C -0.167 4.167 25 C -0.232 4.232 26 C -0.008 4.008 27 O -0.128 6.128 28 C -0.149 4.149 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.349 0.651 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.401 0.599 41 H 0.140 0.860 42 H 0.158 0.842 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.201 0.799 46 H 0.072 0.928 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.758 -28.738 -3.089 30.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.301 5.301 14 C -0.061 4.061 15 C -0.124 4.124 16 C -0.179 4.179 17 C 0.017 3.983 18 N -0.360 5.360 19 C 0.336 3.664 20 O -0.408 6.408 21 C -0.253 4.253 22 C -0.003 4.003 23 C -0.060 4.060 24 C -0.187 4.187 25 C -0.251 4.251 26 C -0.079 4.079 27 O -0.021 6.021 28 C -0.188 4.188 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.235 0.765 41 H 0.158 0.842 42 H 0.175 0.825 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.218 0.782 46 H 0.091 0.909 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.067 -28.610 -3.052 30.167 hybrid contribution -0.408 0.949 -0.566 1.177 sum 8.659 -27.662 -3.618 29.210 Atomic orbital electron populations 1.69609 1.05925 1.28219 1.50605 1.25260 0.95640 0.99703 0.97343 0.85913 0.78751 0.80459 0.79060 1.19933 1.20985 1.19900 1.19660 0.93350 0.82279 1.47669 0.87991 1.41862 1.09186 1.04598 1.64441 1.19841 0.88397 0.84755 0.84388 1.90520 1.13788 1.87093 1.55373 1.21670 0.94415 0.91070 1.01098 1.60083 1.18829 0.99953 1.51225 1.21951 0.95131 0.88803 1.00229 1.22663 0.98882 0.93147 0.97664 1.23339 0.98950 0.96140 0.99437 1.21747 0.84387 0.95807 0.96331 1.45608 1.22124 1.46838 1.21474 1.17078 0.85255 0.78892 0.85201 1.90862 1.74483 1.56484 1.19003 1.22135 0.95849 1.04581 1.02700 1.20636 0.96708 0.94416 0.88503 1.19835 0.98715 0.94417 0.92984 1.22332 1.02656 1.01239 0.92457 1.21720 1.04241 1.00043 0.99049 1.24393 0.98778 1.00308 0.84408 1.84411 1.53386 1.46347 1.17963 1.23553 1.02489 0.95675 0.97086 0.91849 0.77465 0.94002 0.89672 0.83216 0.95450 0.91090 0.88274 0.88827 0.90880 0.88353 0.76460 0.84229 0.82471 0.83071 0.83306 0.78232 0.90933 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 10 C 0.44 10.60 7.82 -10.98 -0.09 10.52 16 11 O -0.58 -16.14 15.78 5.54 0.09 -16.05 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.67 -10.95 6.13 -115.06 -0.70 -11.66 16 14 C 0.07 0.83 5.52 -3.82 -0.02 0.81 16 15 C -0.10 -1.06 3.79 -89.67 -0.34 -1.40 16 16 C -0.14 -1.14 7.38 -25.92 -0.19 -1.33 16 17 C 0.12 1.18 4.30 -67.12 -0.29 0.89 16 18 N -0.71 -6.41 5.25 -55.92 -0.29 -6.70 16 19 C 0.54 5.93 7.03 -15.00 -0.11 5.82 16 20 O -0.53 -7.62 12.69 -19.59 -0.25 -7.86 16 21 C -0.23 -1.83 9.75 -39.26 -0.38 -2.21 16 22 C 0.02 0.13 9.78 -39.23 -0.38 -0.25 16 23 C -0.01 -0.10 6.08 -38.40 -0.23 -0.33 16 24 C -0.17 -1.42 10.90 -38.90 -0.42 -1.84 16 25 C -0.23 -1.94 10.87 -39.90 -0.43 -2.38 16 26 C -0.01 -0.07 12.06 29.64 0.36 0.28 16 27 O -0.13 -1.56 7.27 -20.03 -0.15 -1.71 16 28 C -0.15 -1.56 7.45 -25.77 -0.19 -1.75 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.35 6.00 8.43 -39.29 -0.33 5.67 16 34 H 0.03 0.32 7.85 -51.93 -0.41 -0.09 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.10 1.08 7.50 -51.93 -0.39 0.69 16 40 H 0.40 2.73 8.66 -40.82 -0.35 2.38 16 41 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.16 0.56 8.06 -52.49 -0.42 0.13 16 43 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.89 7.90 -51.93 -0.41 0.48 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -35.81 401.36 -9.41 -45.21 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -6.80 Total: 15.50 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.00 Total: -0.42 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.33 Total: -56.92 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.31 Total: -25.62 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.81 -9.41 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717380877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.257 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds