Wall clock time and date at job start Wed Apr 1 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00272 * 2 1 4 4 H 1.48491 * 109.47228 * 240.00018 * 3 2 1 5 5 H 1.48498 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46855 * 120.00236 * 3 2 1 7 7 C 1.38952 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00503 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99630 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99920 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99674 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99854 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46783 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99979 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47070 * 179.97438 * 14 13 12 16 16 C 1.53784 * 113.61271 * 174.99927 * 15 14 13 17 17 C 1.53784 * 87.08004 * 139.98590 * 16 15 14 18 18 N 1.46496 * 113.61682 * 89.11894 * 17 16 15 19 19 C 1.34779 * 120.00238 * 156.52743 * 18 17 16 20 20 O 1.21779 * 119.99666 * 359.97438 * 19 18 17 21 21 C 1.41545 * 120.00087 * 179.97438 * 19 18 17 22 22 C 1.35629 * 119.99876 * 188.43255 * 21 19 18 23 23 C 1.41600 * 119.99939 * 29.88642 * 22 21 19 24 24 C 1.37957 * 126.10277 * 186.15112 * 23 22 21 25 25 C 1.40314 * 106.52961 * 179.97438 * 24 23 22 26 26 C 1.35157 * 107.20583 * 359.97438 * 25 24 23 27 27 O 1.34019 * 109.03356 * 359.77278 * 26 25 24 28 28 C 1.53785 * 87.17178 * 334.52359 * 17 16 15 29 29 H 0.97009 * 119.99413 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00583 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47483 * 59.99730 * 12 10 9 32 32 H 1.08995 * 109.46650 * 299.98915 * 12 10 9 33 33 H 1.00903 * 110.99919 * 303.94534 * 13 12 10 34 34 H 1.08999 * 109.47096 * 60.00062 * 14 13 12 35 35 H 1.08993 * 109.46823 * 300.00174 * 14 13 12 36 36 H 1.09002 * 112.85135 * 43.80404 * 15 14 13 37 37 H 1.08998 * 113.61358 * 25.43244 * 16 15 14 38 38 H 1.09007 * 113.69076 * 254.54340 * 16 15 14 39 39 H 1.09004 * 113.60979 * 219.93574 * 17 16 15 40 40 H 0.97001 * 119.99623 * 336.52430 * 18 17 16 41 41 H 1.08004 * 119.99963 * 8.43102 * 21 19 18 42 42 H 1.07998 * 119.99664 * 209.88429 * 22 21 19 43 43 H 1.07999 * 126.73345 * 359.97438 * 24 23 22 44 44 H 1.08000 * 126.39511 * 179.97438 * 25 24 23 45 45 H 1.07994 * 125.48620 * 180.02562 * 26 25 24 46 46 H 1.08999 * 113.60675 * 140.02226 * 28 17 16 47 47 H 1.08994 * 113.61688 * 270.92933 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0016 14 6 1.4977 -7.2709 -0.0016 15 6 2.5225 -8.4069 -0.0028 16 6 1.8930 -9.8046 0.1200 17 6 2.9309 -10.2765 -0.9120 18 7 4.1873 -10.7343 -0.3137 19 6 4.9824 -11.5890 -0.9872 20 8 4.6561 -11.9812 -2.0930 21 6 6.1966 -12.0309 -0.4093 22 6 7.0769 -12.7509 -1.1484 23 6 7.1546 -12.5526 -2.5483 24 6 7.9117 -13.2920 -3.4332 25 6 7.6833 -12.7473 -4.7060 26 6 6.8163 -11.7219 -4.5524 27 8 6.4963 -11.6107 -3.2558 28 6 2.9806 -8.8235 -1.4133 29 1 -0.4850 0.8402 0.0004 30 1 0.3532 -2.3907 0.0002 31 1 0.6171 -4.9205 -0.8913 32 1 0.6166 -4.9209 0.8887 33 1 2.8328 -5.9122 -0.7831 34 1 0.8725 -7.3452 -0.8914 35 1 0.8731 -7.3454 0.8885 36 1 3.3448 -8.2358 0.6920 37 1 0.8654 -9.8538 -0.2401 38 1 2.0188 -10.2567 1.1039 39 1 2.5306 -10.9776 -1.6444 40 1 4.4469 -10.4221 0.5673 41 1 6.4221 -11.7947 0.6202 42 1 7.7185 -13.4754 -0.6691 43 1 8.5541 -14.1263 -3.1934 44 1 8.1190 -13.0845 -5.6350 45 1 6.4387 -11.0958 -5.3472 46 1 3.9847 -8.4831 -1.6662 47 1 2.2498 -8.6050 -2.1919 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717380877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:51 Heat of formation + Delta-G solvation = -29.633145 kcal Electronic energy + Delta-G solvation = -28733.527553 eV Core-core repulsion = 24497.562689 eV Total energy + Delta-G solvation = -4235.964864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.37407 -41.27060 -40.17612 -39.51457 -36.55376 -35.78146 -34.97388 -34.10055 -33.81244 -33.26097 -30.15869 -29.42577 -27.33437 -26.64077 -25.72932 -24.76369 -22.92309 -22.61667 -22.18684 -21.13507 -20.42182 -20.12313 -19.86179 -18.88441 -17.91310 -17.50430 -17.09448 -16.88245 -16.79299 -16.47559 -16.17849 -15.85779 -15.79366 -15.54007 -15.23501 -15.05346 -14.86813 -14.39412 -14.22845 -13.99140 -13.76821 -13.65455 -13.50004 -13.43552 -13.33794 -13.11012 -13.02573 -12.82932 -12.54929 -12.44192 -12.12963 -11.82257 -11.51172 -11.42767 -11.25608 -11.06482 -10.86780 -10.72179 -10.35017 -10.02548 -9.94782 -9.31084 -8.76838 -8.47151 -5.96186 -0.59737 1.25985 1.39474 1.41265 1.52398 1.78143 2.04435 2.24402 2.28884 2.40771 2.47807 2.93091 3.19903 3.49797 3.57438 3.77070 3.86946 3.92883 3.98526 4.07151 4.09307 4.18516 4.32579 4.45081 4.49557 4.54677 4.56121 4.67430 4.74106 4.79570 4.81123 4.86365 4.88881 4.91965 5.04554 5.07242 5.13613 5.20629 5.33655 5.34660 5.39975 5.62368 5.72896 5.90291 6.12886 6.26889 6.41138 6.59585 6.66195 7.11670 7.37350 7.55289 8.10816 8.69915 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.001596 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.952027 B =17541.968208 C =18590.327336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.070 3.930 15 C -0.099 4.099 16 C -0.119 4.119 17 C 0.122 3.878 18 N -0.703 5.703 19 C 0.535 3.465 20 O -0.573 6.573 21 C -0.247 4.247 22 C 0.022 3.978 23 C -0.041 4.041 24 C -0.167 4.167 25 C -0.235 4.235 26 C -0.033 4.033 27 O -0.161 6.161 28 C -0.151 4.151 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.341 0.659 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.412 0.588 41 H 0.173 0.827 42 H 0.199 0.801 43 H 0.181 0.819 44 H 0.172 0.828 45 H 0.218 0.782 46 H 0.050 0.950 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.718 -29.818 -2.213 31.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.059 4.059 15 C -0.118 4.118 16 C -0.158 4.158 17 C 0.016 3.984 18 N -0.354 5.354 19 C 0.328 3.672 20 O -0.455 6.455 21 C -0.267 4.267 22 C 0.002 3.998 23 C -0.090 4.090 24 C -0.186 4.186 25 C -0.254 4.254 26 C -0.103 4.103 27 O -0.055 6.055 28 C -0.190 4.190 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.249 0.751 41 H 0.190 0.810 42 H 0.216 0.784 43 H 0.198 0.802 44 H 0.190 0.810 45 H 0.234 0.766 46 H 0.069 0.931 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.994 -29.701 -2.144 31.107 hybrid contribution -0.372 1.229 -0.904 1.570 sum 8.623 -28.472 -3.048 29.905 Atomic orbital electron populations 1.69668 1.06810 1.29379 1.50143 1.26049 0.96573 1.02414 0.96193 0.84981 0.77765 0.76602 0.78933 1.19739 1.19376 1.19721 1.19642 0.92720 0.84097 1.50180 0.90376 1.41931 1.09331 1.04704 1.65011 1.20934 0.88277 0.86249 0.82194 1.90487 1.15933 1.87996 1.56719 1.21544 0.94076 0.88180 1.03012 1.60114 1.19105 1.01177 1.51104 1.22064 0.95520 0.87020 1.01256 1.22573 0.98509 0.93676 0.97028 1.23254 0.98894 0.93897 0.99730 1.21689 0.85197 0.94699 0.96789 1.45571 1.21747 1.46244 1.21806 1.17648 0.86279 0.78589 0.84732 1.90838 1.75559 1.58254 1.20895 1.22332 0.95000 1.05058 1.04314 1.21240 0.96861 0.94206 0.87474 1.20547 0.99280 0.94768 0.94442 1.22777 1.02251 1.01477 0.92086 1.22104 1.03659 0.99462 1.00145 1.24954 0.99580 1.01483 0.84298 1.84385 1.54483 1.47562 1.19048 1.23556 1.01349 0.96509 0.97568 0.91263 0.76942 0.91815 0.87660 0.84146 0.94304 0.89921 0.88967 0.87525 0.89239 0.89934 0.75086 0.80961 0.78392 0.80171 0.81048 0.76588 0.93075 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.34 -19.41 9.68 84.04 0.81 -18.59 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.84 5.29 -306.97 -1.62 -31.46 16 10 C 0.44 21.17 7.82 87.66 0.69 21.86 16 11 O -0.62 -35.42 15.78 -3.09 -0.05 -35.47 16 12 C 0.06 2.24 6.17 85.56 0.53 2.76 16 13 N -0.68 -21.76 6.13 -517.95 -3.17 -24.93 16 14 C 0.07 1.55 5.52 86.30 0.48 2.03 16 15 C -0.10 -1.89 3.79 -10.18 -0.04 -1.92 16 16 C -0.12 -1.69 7.38 31.12 0.23 -1.46 16 17 C 0.12 2.31 4.30 45.52 0.20 2.51 16 18 N -0.70 -12.47 5.25 -449.02 -2.36 -14.83 16 19 C 0.53 11.77 7.03 85.06 0.60 12.36 16 20 O -0.57 -17.24 12.69 19.02 0.24 -17.00 16 21 C -0.25 -3.65 9.75 22.48 0.22 -3.43 16 22 C 0.02 0.30 9.78 22.50 0.22 0.52 16 23 C -0.04 -0.82 6.08 23.03 0.14 -0.68 16 24 C -0.17 -2.64 10.90 22.71 0.25 -2.40 16 25 C -0.23 -3.83 10.87 22.06 0.24 -3.59 16 26 C -0.03 -0.65 12.06 67.11 0.81 0.16 16 27 O -0.16 -4.11 7.27 17.45 0.13 -3.98 16 28 C -0.15 -3.17 7.45 31.21 0.23 -2.94 16 29 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 30 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.34 11.76 8.43 -89.69 -0.76 11.00 16 34 H 0.04 0.80 7.85 -2.39 -0.02 0.78 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.11 1.29 8.10 -2.39 -0.02 1.28 16 38 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.08 1.86 7.50 -2.38 -0.02 1.84 16 40 H 0.41 5.19 8.66 -92.71 -0.80 4.38 16 41 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 44 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.22 2.98 8.06 -2.91 -0.02 2.95 16 46 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.09 1.81 7.90 -2.39 -0.02 1.79 16 Total: -1.00 -80.23 401.36 0.27 -79.96 By element: Atomic # 1 Polarization: 46.32 SS G_CDS: -1.27 Total: 45.05 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 6.06 Total: 6.97 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -6.87 Total: -120.81 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: 0.32 Total: -56.45 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -80.23 0.27 -79.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717380877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.328 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds