Wall clock time and date at job start Wed Apr 1 2020 04:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99908 * 2 1 4 4 H 1.48502 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47154 * 299.99447 * 3 2 1 6 6 H 1.48500 * 109.47215 * 59.99727 * 3 2 1 7 7 C 1.38820 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99233 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99770 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46997 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.91062 * 316.24686 * 11 10 9 13 13 C 1.53774 * 113.61636 * 87.50328 * 11 10 9 14 14 C 1.53778 * 87.08310 * 139.98054 * 13 11 10 15 15 H 1.09000 * 113.69176 * 220.00535 * 14 13 11 16 16 N 1.46504 * 113.61356 * 89.11772 * 14 13 11 17 17 C 1.34776 * 120.00227 * 107.50492 * 16 14 13 18 18 O 1.21589 * 119.99858 * 359.97438 * 17 16 14 19 19 C 1.47597 * 120.00032 * 179.97438 * 17 16 14 20 20 C 1.39737 * 120.09116 * 0.24726 * 19 17 16 21 21 C 1.37696 * 119.91454 * 180.21105 * 20 19 17 22 22 C 1.38998 * 120.08568 * 359.51712 * 21 20 19 23 23 O 1.35710 * 119.91151 * 180.26031 * 22 21 20 24 24 C 1.42898 * 117.00376 * 180.02562 * 23 22 21 25 25 C 1.50696 * 109.47450 * 179.97438 * 24 23 22 26 26 N 1.34777 * 119.99933 * 179.97438 * 25 24 23 27 27 O 1.21284 * 120.00277 * 359.97438 * 25 24 23 28 28 C 1.38999 * 120.17736 * 0.27883 * 22 21 20 29 29 C 1.37700 * 120.08504 * 359.95198 * 28 22 21 30 30 C 1.53778 * 113.61273 * 185.00104 * 11 10 9 31 31 H 0.96997 * 120.00076 * 0.02562 * 1 2 3 32 32 H 0.97005 * 119.99843 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46935 * 59.99820 * 10 9 7 34 34 H 1.08994 * 109.47174 * 299.99872 * 10 9 7 35 35 H 1.08999 * 113.61587 * 25.42842 * 13 11 10 36 36 H 1.09001 * 113.61334 * 254.53050 * 13 11 10 37 37 H 0.96997 * 119.99742 * 287.49807 * 16 14 13 38 38 H 1.07998 * 120.03944 * 0.02562 * 20 19 17 39 39 H 1.08002 * 119.95978 * 179.79932 * 21 20 19 40 40 H 1.09001 * 109.47185 * 299.99814 * 24 23 22 41 41 H 1.09007 * 109.47019 * 59.99431 * 24 23 22 42 42 H 0.97000 * 120.00343 * 359.97438 * 26 25 24 43 43 H 0.97009 * 119.99927 * 180.02562 * 26 25 24 44 44 H 1.07996 * 119.95224 * 179.97438 * 28 22 21 45 45 H 1.08006 * 120.03783 * 179.97438 * 29 28 22 46 46 H 1.09000 * 113.61786 * 105.47183 * 30 11 10 47 47 H 1.08994 * 113.69479 * 334.57645 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.2372 -4.6708 0.6958 13 6 0.6164 -5.2484 -1.4062 14 6 0.7046 -6.7001 -0.9065 15 1 1.1224 -7.3907 -1.6390 16 7 -0.5387 -7.1908 -0.3066 17 6 -1.2958 -8.0902 -0.9655 18 8 -0.9472 -8.4941 -2.0581 19 6 -2.5480 -8.5850 -0.3607 20 6 -2.9530 -8.1182 0.8926 21 6 -4.1196 -8.5855 1.4553 22 6 -4.8992 -9.5128 0.7739 23 8 -6.0511 -9.9670 1.3295 24 6 -6.8037 -10.9193 0.5754 25 6 -8.0401 -11.3057 1.3454 26 7 -8.9067 -12.1974 0.8254 27 8 -8.2554 -10.8144 2.4332 28 6 -4.5021 -9.9764 -0.4749 29 6 -3.3343 -9.5175 -1.0422 30 6 1.7306 -6.2000 0.1241 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.6848 -3.7145 0.8905 34 1 2.6847 -3.7145 -0.8894 35 1 1.3398 -5.0102 -2.1859 36 1 -0.3966 -4.9337 -1.6570 37 1 -0.8168 -6.8683 0.5649 38 1 -2.3501 -7.3941 1.4205 39 1 -4.4316 -8.2276 2.4253 40 1 -7.0925 -10.4802 -0.3795 41 1 -6.1945 -11.8057 0.3983 42 1 -8.7348 -12.5901 -0.0448 43 1 -9.7028 -12.4459 1.3209 44 1 -5.1105 -10.6972 -1.0009 45 1 -3.0263 -9.8786 -2.0124 46 1 1.6171 -6.6537 1.1086 47 1 2.7588 -6.2235 -0.2367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717644175.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:49 Heat of formation + Delta-G solvation = -79.305532 kcal Electronic energy + Delta-G solvation = -28508.752899 eV Core-core repulsion = 24270.634078 eV Total energy + Delta-G solvation = -4238.118820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.73226 -41.17889 -40.22458 -39.45659 -37.92508 -36.33577 -34.80144 -34.54922 -32.87037 -32.20882 -31.34620 -29.34550 -28.42308 -26.61244 -25.51075 -24.49947 -23.96731 -22.87633 -22.00802 -21.54239 -20.32833 -19.57306 -19.06534 -18.91114 -18.39885 -17.47723 -17.42224 -17.14489 -16.76762 -16.45448 -16.12154 -16.05172 -15.66689 -15.60765 -15.39452 -15.13066 -14.97432 -14.87140 -14.53481 -14.44392 -13.88815 -13.70040 -13.54107 -13.46946 -13.33897 -13.10586 -12.90847 -12.71052 -12.12966 -12.11433 -11.98297 -11.92009 -11.73128 -11.34790 -11.14472 -11.13802 -11.05653 -10.85062 -10.75678 -10.14287 -10.08338 -9.33635 -8.96621 -7.94411 -5.22441 -0.17343 0.29211 1.47030 1.47526 1.48246 1.58448 1.63162 1.78573 2.11398 2.56723 2.79706 2.80506 3.38890 3.59528 3.61699 3.64425 3.72371 3.81830 3.89267 3.95394 3.97884 4.06232 4.10683 4.18426 4.33454 4.35860 4.50017 4.57977 4.77126 4.86904 4.90319 4.93390 4.96475 5.00497 5.07889 5.16604 5.19131 5.28437 5.30128 5.38424 5.50375 5.53178 5.69037 5.81183 6.19172 6.28565 6.40464 6.51601 7.17833 7.24807 7.34524 8.12896 8.35019 9.29432 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.001644 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.869671 B =17024.545109 C =18374.356441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.160 3.840 11 C -0.112 4.112 12 H 0.086 0.914 13 C -0.143 4.143 14 C 0.126 3.874 15 H 0.097 0.903 16 N -0.698 5.698 17 C 0.562 3.438 18 O -0.581 6.581 19 C -0.191 4.191 20 C -0.039 4.039 21 C -0.167 4.167 22 C 0.151 3.849 23 O -0.312 6.312 24 C 0.028 3.972 25 C 0.516 3.484 26 N -0.826 5.826 27 O -0.585 6.585 28 C -0.209 4.209 29 C -0.024 4.024 30 C -0.116 4.116 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.411 0.589 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.424 0.576 43 H 0.414 0.586 44 H 0.172 0.828 45 H 0.140 0.860 46 H 0.092 0.908 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 -31.714 -0.744 34.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.130 4.130 12 H 0.104 0.896 13 C -0.182 4.182 14 C 0.020 3.980 15 H 0.115 0.885 16 N -0.349 5.349 17 C 0.352 3.648 18 O -0.463 6.463 19 C -0.194 4.194 20 C -0.058 4.058 21 C -0.185 4.185 22 C 0.105 3.895 23 O -0.224 6.224 24 C -0.049 4.049 25 C 0.300 3.700 26 N -0.393 5.393 27 O -0.464 6.464 28 C -0.227 4.227 29 C -0.043 4.043 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.204 0.796 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.249 0.751 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.256 0.744 43 H 0.246 0.754 44 H 0.189 0.811 45 H 0.158 0.842 46 H 0.110 0.890 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.800 -31.458 -0.656 34.358 hybrid contribution -0.473 1.209 -0.020 1.298 sum -14.273 -30.249 -0.676 33.454 Atomic orbital electron populations 1.69823 1.06628 1.25920 1.59759 1.25568 0.96400 1.01112 1.03870 0.85076 0.78281 0.79811 0.76626 1.18967 1.22159 1.21996 1.19714 0.91544 0.85543 1.40838 0.90663 1.42591 1.05598 1.01291 1.89274 1.20832 0.93778 0.84518 0.97529 1.22690 0.98554 0.94362 0.97444 0.89623 1.23424 1.01290 0.96015 0.97442 1.21789 0.84932 0.94409 0.96842 0.88497 1.45553 1.23249 1.43356 1.22729 1.18498 0.83791 0.78190 0.84306 1.90739 1.73295 1.60173 1.22049 1.19828 0.97240 1.04542 0.97805 1.21281 0.94933 0.96629 0.92914 1.20567 0.95539 0.99948 1.02463 1.19413 0.85202 0.92830 0.92059 1.86103 1.32649 1.57730 1.45950 1.22884 0.91657 0.94836 0.95559 1.20459 0.85001 0.78997 0.85557 1.43502 1.25978 1.44662 1.25111 1.90813 1.76784 1.55242 1.23576 1.21457 0.99722 1.05927 0.95630 1.21179 0.92008 0.92107 0.99044 1.23232 0.98986 0.93352 0.99875 0.94088 0.79565 0.95997 0.96145 0.89546 0.93132 0.75094 0.83088 0.83726 0.85376 0.85102 0.74409 0.75357 0.81101 0.84194 0.88965 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.24 -13.86 9.99 84.04 0.84 -13.02 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 N -0.75 -38.24 5.60 -343.45 -1.92 -40.16 16 10 C 0.16 6.24 6.10 86.38 0.53 6.77 16 11 C -0.11 -3.34 3.63 -10.27 -0.04 -3.38 16 12 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 13 C -0.14 -4.26 7.43 31.12 0.23 -4.03 16 14 C 0.13 3.07 4.32 45.52 0.20 3.26 16 15 H 0.10 2.51 7.46 -2.39 -0.02 2.49 16 16 N -0.70 -15.61 5.21 -443.13 -2.31 -17.92 16 17 C 0.56 14.38 7.76 86.71 0.67 15.05 16 18 O -0.58 -18.90 15.94 -4.00 -0.06 -18.96 16 19 C -0.19 -3.91 5.87 -20.08 -0.12 -4.03 16 20 C -0.04 -0.66 9.53 22.50 0.21 -0.45 16 21 C -0.17 -2.85 9.97 22.32 0.22 -2.63 16 22 C 0.15 2.41 6.70 22.63 0.15 2.56 16 23 O -0.31 -5.22 9.66 -71.27 -0.69 -5.91 16 24 C 0.03 0.19 5.21 71.23 0.37 0.56 16 25 C 0.52 5.98 8.18 87.66 0.72 6.69 16 26 N -0.83 -1.31 8.87 -173.53 -1.54 -2.85 16 27 O -0.58 -14.38 17.34 15.99 0.28 -14.11 16 28 C -0.21 -2.58 9.01 22.32 0.20 -2.38 16 29 C -0.02 -0.42 9.58 22.50 0.22 -0.21 16 30 C -0.12 -2.52 7.39 31.12 0.23 -2.29 16 31 H 0.25 15.04 8.31 -92.71 -0.77 14.26 16 32 H 0.37 20.39 7.67 -92.70 -0.71 19.68 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.02 0.81 7.84 -2.39 -0.02 0.79 16 35 H 0.09 2.64 7.90 -2.39 -0.02 2.62 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.41 7.29 6.72 -92.71 -0.62 6.67 16 38 H 0.15 1.94 6.39 -2.91 -0.02 1.93 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.13 0.10 7.65 -2.39 -0.02 0.08 16 41 H 0.13 0.01 7.65 -2.38 -0.02 -0.01 16 42 H 0.42 -2.71 8.83 -92.71 -0.82 -3.53 16 43 H 0.41 0.47 8.93 -92.70 -0.83 -0.36 16 44 H 0.17 0.67 6.28 -2.91 -0.02 0.65 16 45 H 0.14 2.41 7.64 -2.91 -0.02 2.38 16 46 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.11 2.14 8.10 -2.39 -0.02 2.12 16 Total: -1.00 -87.08 398.58 -0.76 -87.85 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -1.92 Total: 24.84 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.10 Total: -1.56 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -5.49 Total: -120.89 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.47 Total: -38.98 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -87.08 -0.76 -87.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717644175.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.540 kcal (2) G-P(sol) polarization free energy of solvation -87.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds