Wall clock time and date at job start Wed Apr 1 2020 04:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00003 * 2 1 4 4 H 1.48504 * 109.47106 * 269.99804 * 3 2 1 5 5 H 1.48497 * 109.47210 * 30.00235 * 3 2 1 6 6 H 1.48501 * 109.47222 * 150.00052 * 3 2 1 7 7 C 1.38813 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99583 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00076 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47422 * 175.03740 * 10 9 7 12 12 N 1.46504 * 109.53939 * 305.56483 * 11 10 9 13 13 C 1.34766 * 120.00251 * 303.81961 * 12 11 10 14 14 O 1.21362 * 120.00342 * 354.50292 * 13 12 11 15 15 C 1.49358 * 120.00354 * 174.77790 * 13 12 11 16 16 O 1.21382 * 119.99613 * 0.02562 * 15 13 12 17 17 N 1.34771 * 120.00647 * 179.97438 * 15 13 12 18 18 C 1.39722 * 120.00514 * 185.36582 * 17 15 13 19 19 C 1.38930 * 120.07457 * 213.30570 * 18 17 15 20 20 C 1.38100 * 119.91811 * 179.77172 * 19 18 17 21 21 C 1.38295 * 120.07938 * 0.49780 * 20 19 18 22 22 C 1.38292 * 120.14818 * 359.75397 * 21 20 19 23 23 C 1.38098 * 120.08084 * 359.97438 * 22 21 20 24 24 C 1.53174 * 109.54567 * 65.74387 * 11 10 9 25 25 C 1.53284 * 109.06393 * 176.85540 * 24 11 10 26 26 O 1.42902 * 109.46075 * 302.44314 * 25 24 11 27 27 C 1.42902 * 114.09382 * 61.16196 * 26 25 24 28 28 C 1.53097 * 109.41511 * 298.83646 * 27 26 25 29 29 H 0.97000 * 119.99783 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00323 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47591 * 55.03517 * 10 9 7 32 32 H 1.09003 * 109.47084 * 295.03238 * 10 9 7 33 33 H 0.97006 * 119.99302 * 123.81879 * 12 11 10 34 34 H 0.97011 * 119.99430 * 5.37079 * 17 15 13 35 35 H 1.08000 * 120.04394 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.96027 * 180.27105 * 20 19 18 37 37 H 1.07998 * 119.92744 * 179.72657 * 21 20 19 38 38 H 1.08005 * 119.96131 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.03995 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.52383 * 296.84570 * 24 11 10 41 41 H 1.09002 * 109.52462 * 57.03363 * 24 11 10 42 42 H 1.08997 * 109.45474 * 182.44721 * 25 24 11 43 43 H 1.09001 * 109.46669 * 62.45263 * 25 24 11 44 44 H 1.09002 * 109.48233 * 178.86067 * 27 26 25 45 45 H 1.08993 * 109.49447 * 58.83017 * 27 26 25 46 46 H 1.09000 * 109.52405 * 297.70689 * 28 27 26 47 47 H 1.08998 * 109.57414 * 177.55098 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0683 -4.8170 0.1262 12 7 0.2251 -4.6171 1.3075 13 6 0.7909 -4.4595 2.5204 14 8 1.9913 -4.5822 2.6507 15 6 -0.0599 -4.1398 3.7056 16 8 -1.2611 -4.0224 3.5763 17 7 0.5058 -3.9826 4.9187 18 6 -0.2985 -3.7950 6.0457 19 6 0.1422 -2.9910 7.0895 20 6 -0.6574 -2.8040 8.1998 21 6 -1.8911 -3.4242 8.2780 22 6 -2.3305 -4.2293 7.2430 23 6 -1.5385 -4.4162 6.1273 24 6 0.1891 -4.8773 -1.1267 25 6 -0.7438 -6.0894 -1.0257 26 8 0.0346 -7.2776 -0.8695 27 6 0.8412 -7.2958 0.3099 28 6 1.8377 -6.1344 0.2629 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.7490 -3.6767 0.8444 32 1 2.6169 -3.7545 -0.9290 33 1 -0.7405 -4.5982 1.2165 34 1 1.4715 -3.9997 5.0094 35 1 1.1071 -2.5095 7.0309 36 1 -0.3174 -2.1757 9.0097 37 1 -2.5125 -3.2798 9.1494 38 1 -3.2943 -4.7125 7.3074 39 1 -1.8822 -5.0455 5.3196 40 1 -0.4024 -3.9648 -1.2009 41 1 0.8201 -4.9763 -2.0100 42 1 -1.3422 -6.1636 -1.9337 43 1 -1.4022 -5.9703 -0.1652 44 1 1.3848 -8.2390 0.3641 45 1 0.2039 -7.1926 1.1881 46 1 2.5019 -6.2588 -0.5924 47 1 2.4250 -6.1198 1.1810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724918226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:42 Heat of formation + Delta-G solvation = -63.254099 kcal Electronic energy + Delta-G solvation = -31568.347598 eV Core-core repulsion = 27330.924820 eV Total energy + Delta-G solvation = -4237.422778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15296 -40.16868 -38.74450 -37.86021 -35.96679 -34.93456 -33.69792 -31.76230 -31.11800 -31.02681 -30.44733 -29.79976 -26.69290 -25.20230 -23.81085 -23.43980 -22.96452 -22.18665 -21.51728 -20.42836 -19.17406 -18.77287 -17.58083 -17.28718 -16.56557 -16.13637 -16.00972 -15.90651 -15.74455 -15.38738 -14.87623 -14.57875 -14.44277 -14.32232 -13.95936 -13.91905 -13.54882 -13.41348 -13.17104 -12.89382 -12.78179 -12.50464 -12.43042 -11.97072 -11.89591 -11.64777 -11.45406 -11.30863 -11.18377 -10.94131 -10.84048 -10.58497 -10.49940 -10.32275 -10.09552 -9.74218 -9.58680 -9.34755 -9.03355 -8.85866 -8.78455 -8.26345 -6.92082 -5.77384 -3.05504 1.00509 1.29297 1.73431 2.38836 3.34619 3.42661 3.48119 3.49722 3.65105 3.75329 3.91272 4.48814 4.56029 4.76425 4.80885 4.83849 4.91194 5.02267 5.03831 5.05537 5.24145 5.28656 5.39006 5.40668 5.45318 5.57463 5.69513 5.70047 5.85735 5.88158 5.94596 6.01890 6.13434 6.15317 6.18122 6.20509 6.35293 6.35964 6.41347 6.42330 6.67293 6.87084 6.87522 7.05065 7.21180 7.49321 7.70272 7.80724 8.16623 8.40842 9.52514 10.08183 10.43547 11.45233 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007193 B = 0.004354 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3891.956236 B = 6429.675408 C = 9327.984398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.141 3.859 11 C 0.172 3.828 12 N -0.679 5.679 13 C 0.523 3.477 14 O -0.511 6.511 15 C 0.512 3.488 16 O -0.497 6.497 17 N -0.649 5.649 18 C 0.150 3.850 19 C -0.142 4.142 20 C -0.101 4.101 21 C -0.138 4.138 22 C -0.101 4.101 23 C -0.122 4.122 24 C -0.155 4.155 25 C 0.059 3.941 26 O -0.384 6.384 27 C 0.065 3.935 28 C -0.164 4.164 29 H 0.255 0.745 30 H 0.382 0.618 31 H 0.049 0.951 32 H 0.026 0.974 33 H 0.408 0.592 34 H 0.423 0.577 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 -14.324 10.801 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.013 3.987 11 C 0.086 3.914 12 N -0.332 5.332 13 C 0.303 3.697 14 O -0.387 6.387 15 C 0.294 3.706 16 O -0.370 6.370 17 N -0.296 5.296 18 C 0.056 3.944 19 C -0.162 4.162 20 C -0.119 4.119 21 C -0.157 4.157 22 C -0.120 4.120 23 C -0.142 4.142 24 C -0.193 4.193 25 C -0.018 4.018 26 O -0.303 6.303 27 C -0.012 4.012 28 C -0.203 4.203 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.244 0.756 34 H 0.261 0.739 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.101 0.899 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.265 -14.365 10.570 17.978 hybrid contribution 0.182 1.532 0.157 1.550 sum -2.083 -12.833 10.728 16.855 Atomic orbital electron populations 1.69648 1.05038 1.25610 1.57814 1.24705 0.95495 0.97572 1.03071 0.86213 0.78673 0.83954 0.77509 1.21714 1.21836 1.20817 1.19194 0.91003 0.84053 1.42550 0.91281 1.42234 1.05622 0.99673 1.89559 1.21093 0.93360 0.84871 0.99374 1.20780 0.91392 0.95823 0.83367 1.45700 1.11046 1.70649 1.05790 1.19505 0.87681 0.78410 0.84086 1.90698 1.14151 1.48930 1.84934 1.20505 0.88357 0.77442 0.84271 1.90774 1.14721 1.46681 1.84845 1.43160 1.11334 1.70122 1.04945 1.17765 0.92700 0.96918 0.87035 1.20974 1.01645 0.99023 0.94573 1.20946 0.94250 0.99259 0.97467 1.21144 0.96596 0.98761 0.99154 1.21029 0.99416 0.98421 0.93104 1.21157 0.93968 1.00189 0.98870 1.22491 0.99582 0.99708 0.97512 1.22670 0.92799 0.84590 1.01749 1.87905 1.59474 1.39164 1.43717 1.22524 0.92500 0.98675 0.87529 1.22576 0.99046 0.93741 1.04907 0.93560 0.78395 0.93323 0.95674 0.75600 0.73925 0.85379 0.85607 0.85999 0.85687 0.84856 0.88892 0.89095 0.88528 0.93367 0.89057 0.93566 0.89903 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -17.92 5.21 -59.91 -0.31 -18.23 16 10 C 0.14 2.84 4.80 -4.04 -0.02 2.82 16 11 C 0.17 2.69 0.32 -131.63 -0.04 2.65 16 12 N -0.68 -10.71 3.74 -47.89 -0.18 -10.89 16 13 C 0.52 8.78 7.30 -11.63 -0.08 8.69 16 14 O -0.51 -9.09 12.79 5.49 0.07 -9.02 16 15 C 0.51 8.34 7.62 -11.63 -0.09 8.25 16 16 O -0.50 -8.88 14.19 5.47 0.08 -8.80 16 17 N -0.65 -9.04 5.32 -10.29 -0.05 -9.10 16 18 C 0.15 2.01 6.27 -83.75 -0.53 1.48 16 19 C -0.14 -1.64 9.97 -39.38 -0.39 -2.03 16 20 C -0.10 -1.01 10.04 -39.61 -0.40 -1.41 16 21 C -0.14 -1.35 10.04 -39.54 -0.40 -1.75 16 22 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 23 C -0.12 -1.59 8.65 -39.38 -0.34 -1.93 16 24 C -0.15 -2.22 4.84 -26.49 -0.13 -2.34 16 25 C 0.06 0.72 6.67 37.30 0.25 0.96 16 26 O -0.38 -5.05 10.77 -35.23 -0.38 -5.43 16 27 C 0.06 0.78 6.68 37.21 0.25 1.03 16 28 C -0.16 -2.22 4.81 -26.59 -0.13 -2.35 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 30 H 0.38 9.82 6.51 -40.82 -0.27 9.56 16 31 H 0.05 1.07 6.28 -51.93 -0.33 0.74 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.41 6.12 6.89 -40.82 -0.28 5.84 16 34 H 0.42 5.20 8.30 -40.82 -0.34 4.86 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.13 1.82 6.44 -52.49 -0.34 1.48 16 40 H 0.09 1.49 7.22 -51.93 -0.37 1.12 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.56 7.02 -51.93 -0.36 0.19 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.56 7.75 -51.93 -0.40 0.15 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.09 1.37 6.23 -51.93 -0.32 1.04 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -33.19 381.19 -8.39 -41.58 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -6.37 Total: 18.55 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -2.69 Total: 5.34 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: 0.18 Total: -65.61 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.23 Total: -23.26 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.19 -8.39 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724918226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.676 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds