Wall clock time and date at job start Wed Apr 1 2020 04:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00003 * 2 1 4 4 H 1.48504 * 109.47106 * 269.99804 * 3 2 1 5 5 H 1.48497 * 109.47210 * 30.00235 * 3 2 1 6 6 H 1.48501 * 109.47222 * 150.00052 * 3 2 1 7 7 C 1.38813 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99583 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00076 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47422 * 175.03740 * 10 9 7 12 12 N 1.46504 * 109.53939 * 305.56483 * 11 10 9 13 13 C 1.34766 * 120.00251 * 303.81961 * 12 11 10 14 14 O 1.21362 * 120.00342 * 354.50292 * 13 12 11 15 15 C 1.49358 * 120.00354 * 174.77790 * 13 12 11 16 16 O 1.21382 * 119.99613 * 0.02562 * 15 13 12 17 17 N 1.34771 * 120.00647 * 179.97438 * 15 13 12 18 18 C 1.39722 * 120.00514 * 185.36582 * 17 15 13 19 19 C 1.38930 * 120.07457 * 213.30570 * 18 17 15 20 20 C 1.38100 * 119.91811 * 179.77172 * 19 18 17 21 21 C 1.38295 * 120.07938 * 0.49780 * 20 19 18 22 22 C 1.38292 * 120.14818 * 359.75397 * 21 20 19 23 23 C 1.38098 * 120.08084 * 359.97438 * 22 21 20 24 24 C 1.53174 * 109.54567 * 65.74387 * 11 10 9 25 25 C 1.53284 * 109.06393 * 176.85540 * 24 11 10 26 26 O 1.42902 * 109.46075 * 302.44314 * 25 24 11 27 27 C 1.42902 * 114.09382 * 61.16196 * 26 25 24 28 28 C 1.53097 * 109.41511 * 298.83646 * 27 26 25 29 29 H 0.97000 * 119.99783 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00323 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47591 * 55.03517 * 10 9 7 32 32 H 1.09003 * 109.47084 * 295.03238 * 10 9 7 33 33 H 0.97006 * 119.99302 * 123.81879 * 12 11 10 34 34 H 0.97011 * 119.99430 * 5.37079 * 17 15 13 35 35 H 1.08000 * 120.04394 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.96027 * 180.27105 * 20 19 18 37 37 H 1.07998 * 119.92744 * 179.72657 * 21 20 19 38 38 H 1.08005 * 119.96131 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.03995 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.52383 * 296.84570 * 24 11 10 41 41 H 1.09002 * 109.52462 * 57.03363 * 24 11 10 42 42 H 1.08997 * 109.45474 * 182.44721 * 25 24 11 43 43 H 1.09001 * 109.46669 * 62.45263 * 25 24 11 44 44 H 1.09002 * 109.48233 * 178.86067 * 27 26 25 45 45 H 1.08993 * 109.49447 * 58.83017 * 27 26 25 46 46 H 1.09000 * 109.52405 * 297.70689 * 28 27 26 47 47 H 1.08998 * 109.57414 * 177.55098 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0683 -4.8170 0.1262 12 7 0.2251 -4.6171 1.3075 13 6 0.7909 -4.4595 2.5204 14 8 1.9913 -4.5822 2.6507 15 6 -0.0599 -4.1398 3.7056 16 8 -1.2611 -4.0224 3.5763 17 7 0.5058 -3.9826 4.9187 18 6 -0.2985 -3.7950 6.0457 19 6 0.1422 -2.9910 7.0895 20 6 -0.6574 -2.8040 8.1998 21 6 -1.8911 -3.4242 8.2780 22 6 -2.3305 -4.2293 7.2430 23 6 -1.5385 -4.4162 6.1273 24 6 0.1891 -4.8773 -1.1267 25 6 -0.7438 -6.0894 -1.0257 26 8 0.0346 -7.2776 -0.8695 27 6 0.8412 -7.2958 0.3099 28 6 1.8377 -6.1344 0.2629 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.7490 -3.6767 0.8444 32 1 2.6169 -3.7545 -0.9290 33 1 -0.7405 -4.5982 1.2165 34 1 1.4715 -3.9997 5.0094 35 1 1.1071 -2.5095 7.0309 36 1 -0.3174 -2.1757 9.0097 37 1 -2.5125 -3.2798 9.1494 38 1 -3.2943 -4.7125 7.3074 39 1 -1.8822 -5.0455 5.3196 40 1 -0.4024 -3.9648 -1.2009 41 1 0.8201 -4.9763 -2.0100 42 1 -1.3422 -6.1636 -1.9337 43 1 -1.4022 -5.9703 -0.1652 44 1 1.3848 -8.2390 0.3641 45 1 0.2039 -7.1926 1.1881 46 1 2.5019 -6.2588 -0.5924 47 1 2.4250 -6.1198 1.1810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724918226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:41 Heat of formation + Delta-G solvation = -86.817897 kcal Electronic energy + Delta-G solvation = -31569.369401 eV Core-core repulsion = 27330.924820 eV Total energy + Delta-G solvation = -4238.444581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.39677 -41.30048 -39.78525 -39.04396 -37.36543 -36.14194 -35.43902 -33.29239 -32.32799 -32.06779 -31.88312 -30.76206 -28.27968 -26.49851 -25.40530 -24.67582 -23.90442 -23.30064 -22.90872 -21.57425 -20.48084 -19.97439 -19.30537 -18.59517 -17.73109 -17.28048 -17.10844 -17.03951 -16.84791 -16.82640 -16.31321 -15.97155 -15.63524 -15.53932 -15.30338 -15.04993 -14.91998 -14.82962 -14.33909 -14.24432 -13.95138 -13.81715 -13.67515 -13.30004 -13.11069 -12.99827 -12.85295 -12.79739 -12.45934 -12.29663 -12.22114 -12.15012 -11.99058 -11.69075 -11.51995 -11.36051 -11.02020 -10.71769 -10.55735 -10.11069 -9.90642 -9.23422 -8.99906 -7.97610 -5.25060 -0.07834 0.42825 0.61607 1.17611 1.43331 1.44359 1.52718 2.07813 2.45776 2.53125 2.85281 2.92927 3.24156 3.37521 3.53045 3.70971 3.78684 3.94927 3.96171 4.02428 4.21169 4.23357 4.28086 4.39687 4.46722 4.51003 4.53438 4.56536 4.70341 4.75718 4.81315 4.83445 4.98404 5.05073 5.06988 5.10251 5.12160 5.23400 5.25685 5.39399 5.46572 5.48812 5.57842 5.85712 6.03778 6.20503 6.23346 6.25929 6.60853 6.85751 7.31541 8.05019 8.30824 9.25062 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007193 B = 0.004354 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3891.956236 B = 6429.675408 C = 9327.984398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.142 3.858 11 C 0.176 3.824 12 N -0.674 5.674 13 C 0.519 3.481 14 O -0.526 6.526 15 C 0.508 3.492 16 O -0.520 6.520 17 N -0.638 5.638 18 C 0.119 3.881 19 C -0.149 4.149 20 C -0.101 4.101 21 C -0.132 4.132 22 C -0.107 4.107 23 C -0.141 4.141 24 C -0.149 4.149 25 C 0.063 3.937 26 O -0.389 6.389 27 C 0.068 3.932 28 C -0.156 4.156 29 H 0.250 0.750 30 H 0.375 0.625 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.411 0.589 34 H 0.428 0.572 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.117 0.883 43 H 0.054 0.946 44 H 0.115 0.885 45 H 0.046 0.954 46 H 0.091 0.909 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -14.830 11.979 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.015 3.985 11 C 0.090 3.910 12 N -0.327 5.327 13 C 0.299 3.701 14 O -0.402 6.402 15 C 0.290 3.710 16 O -0.396 6.396 17 N -0.285 5.285 18 C 0.025 3.975 19 C -0.169 4.169 20 C -0.119 4.119 21 C -0.150 4.150 22 C -0.125 4.125 23 C -0.162 4.162 24 C -0.187 4.187 25 C -0.013 4.013 26 O -0.307 6.307 27 C -0.009 4.009 28 C -0.195 4.195 29 H 0.059 0.941 30 H 0.208 0.792 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.248 0.752 34 H 0.267 0.733 35 H 0.157 0.843 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.164 0.836 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.135 0.865 43 H 0.072 0.928 44 H 0.133 0.867 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.211 -14.903 11.763 19.114 hybrid contribution 0.206 1.666 -0.120 1.683 sum -2.005 -13.238 11.643 17.743 Atomic orbital electron populations 1.69797 1.06370 1.25911 1.59402 1.25446 0.96313 1.00681 1.03712 0.85228 0.77645 0.79898 0.77536 1.21141 1.22296 1.19870 1.19534 0.91244 0.85434 1.41265 0.91329 1.42320 1.05395 1.00464 1.89312 1.21166 0.94022 0.84798 0.98560 1.20728 0.91032 0.95136 0.84060 1.45704 1.11249 1.70126 1.05595 1.19706 0.87633 0.78197 0.84540 1.90682 1.14626 1.49700 1.85242 1.20453 0.88053 0.77689 0.84789 1.90753 1.15372 1.48242 1.85201 1.43100 1.11717 1.69035 1.04602 1.18051 0.93267 0.98735 0.87407 1.21233 1.02484 0.98679 0.94542 1.21363 0.94044 0.99025 0.97499 1.21568 0.96687 0.97220 0.99546 1.21342 0.99986 0.98580 0.92599 1.21223 0.94502 1.00833 0.99599 1.22427 0.99539 1.00045 0.96685 1.22705 0.92256 0.83251 1.03105 1.87910 1.59574 1.39197 1.44059 1.22586 0.92124 0.98898 0.87271 1.22515 0.99209 0.92954 1.04796 0.94109 0.79201 0.94968 0.95346 0.75202 0.73312 0.84284 0.82665 0.82820 0.83614 0.86334 0.90881 0.88842 0.86496 0.92764 0.86703 0.93594 0.89086 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.12 13.06 21.65 0.28 -58.84 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.73 -36.81 5.21 -343.45 -1.79 -38.60 16 10 C 0.14 5.79 4.80 86.38 0.41 6.20 16 11 C 0.18 5.52 0.32 3.72 0.00 5.52 16 12 N -0.67 -21.69 3.74 -423.80 -1.59 -23.27 16 13 C 0.52 17.89 7.30 87.24 0.64 18.53 16 14 O -0.53 -19.13 12.79 -3.28 -0.04 -19.18 16 15 C 0.51 17.16 7.62 87.24 0.66 17.83 16 16 O -0.52 -19.34 14.19 -3.35 -0.05 -19.39 16 17 N -0.64 -18.35 5.32 -304.83 -1.62 -19.97 16 18 C 0.12 3.21 6.27 38.22 0.24 3.45 16 19 C -0.15 -3.31 9.97 22.40 0.22 -3.09 16 20 C -0.10 -1.79 10.04 22.25 0.22 -1.56 16 21 C -0.13 -2.24 10.04 22.30 0.22 -2.01 16 22 C -0.11 -2.18 10.04 22.25 0.22 -1.95 16 23 C -0.14 -3.74 8.65 22.40 0.19 -3.55 16 24 C -0.15 -4.20 4.84 30.75 0.15 -4.05 16 25 C 0.06 1.45 6.67 72.08 0.48 1.94 16 26 O -0.39 -9.43 10.77 -148.98 -1.60 -11.03 16 27 C 0.07 1.52 6.68 72.01 0.48 2.00 16 28 C -0.16 -4.09 4.81 30.69 0.15 -3.94 16 29 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.38 19.81 6.51 -92.71 -0.60 19.21 16 31 H 0.03 1.44 6.28 -2.39 -0.01 1.43 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.41 12.66 6.89 -92.70 -0.64 12.02 16 34 H 0.43 10.89 8.30 -92.70 -0.77 10.12 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.12 3.41 6.44 -2.91 -0.02 3.39 16 40 H 0.07 2.38 7.22 -2.38 -0.02 2.36 16 41 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.05 1.19 7.02 -2.39 -0.02 1.18 16 44 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 1.05 7.75 -2.39 -0.02 1.03 16 46 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.09 2.44 6.23 -2.39 -0.01 2.43 16 Total: -1.00 -71.71 381.19 0.25 -71.46 By element: Atomic # 1 Polarization: 51.97 SS G_CDS: -0.98 Total: 50.99 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 5.61 Total: 18.87 kcal Atomic # 7 Polarization: -135.97 SS G_CDS: -4.71 Total: -140.68 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -1.69 Total: -49.60 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -71.71 0.25 -71.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724918226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.361 kcal (2) G-P(sol) polarization free energy of solvation -71.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds