Wall clock time and date at job start Wed Apr 1 2020 05:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48493 * 109.47091 * 270.00025 * 3 2 1 5 5 H 1.48503 * 109.47096 * 30.00522 * 3 2 1 6 6 H 1.48502 * 109.46752 * 149.99905 * 3 2 1 7 7 C 1.38954 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99909 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99833 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99863 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99826 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00017 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46932 * 179.97438 * 12 10 9 14 14 C 1.48478 * 111.00314 * 287.61102 * 13 12 10 15 15 C 1.54921 * 103.22005 * 200.17033 * 14 13 12 16 16 C 1.54445 * 102.94183 * 37.70819 * 15 14 13 17 17 N 1.46498 * 111.71700 * 98.97576 * 16 15 14 18 18 C 1.34783 * 119.99948 * 62.56085 * 17 16 15 19 19 O 1.21690 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.46662 * 119.99987 * 179.97438 * 18 17 16 21 21 C 1.36535 * 125.98585 * 179.71745 * 20 18 17 22 22 C 1.40366 * 106.70583 * 179.85275 * 21 20 18 23 23 C 1.35130 * 107.11610 * 0.41176 * 22 21 20 24 24 O 1.33932 * 108.76474 * 359.74367 * 23 22 21 25 25 C 1.54109 * 109.03599 * 223.76598 * 16 15 14 26 26 C 1.54883 * 104.15604 * 137.48275 * 25 16 15 27 27 C 1.54822 * 102.74099 * 321.54648 * 26 25 16 28 28 C 1.47921 * 110.99792 * 170.00006 * 13 12 10 29 29 H 1.09000 * 111.35312 * 23.75723 * 28 13 12 30 30 H 0.96993 * 119.99690 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00316 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47091 * 59.99925 * 12 10 9 33 33 H 1.08994 * 109.47591 * 300.00022 * 12 10 9 34 34 H 1.08999 * 110.66641 * 318.60148 * 14 13 12 35 35 H 1.09003 * 110.66732 * 81.73326 * 14 13 12 36 36 H 1.08999 * 110.71854 * 279.34346 * 15 14 13 37 37 H 1.09006 * 110.71867 * 156.07228 * 15 14 13 38 38 H 0.97000 * 120.00123 * 242.56226 * 17 16 15 39 39 H 1.08005 * 126.64890 * 359.96758 * 21 20 18 40 40 H 1.08001 * 126.44047 * 180.15639 * 22 21 20 41 41 H 1.07997 * 125.61664 * 179.78191 * 23 22 21 42 42 H 1.08997 * 110.49604 * 256.15113 * 25 16 15 43 43 H 1.08999 * 110.48984 * 18.82039 * 25 16 15 44 44 H 1.09008 * 110.75891 * 203.23301 * 26 25 16 45 45 H 1.09005 * 110.91618 * 79.93616 * 26 25 16 46 46 H 1.08998 * 110.44560 * 279.06217 * 27 26 25 47 47 H 1.09007 * 110.44370 * 156.53095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4400 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3706 0.0000 13 7 6.0503 -3.7556 0.0006 14 6 5.8323 -4.3966 1.3221 15 6 6.8328 -5.5793 1.3116 16 6 8.0619 -4.9863 0.5883 17 7 9.0919 -4.5535 1.5359 18 6 9.6868 -5.4546 2.3426 19 8 9.3687 -6.6277 2.2835 20 6 10.7183 -5.0214 3.2909 21 6 11.3932 -5.8248 4.1646 22 6 12.2812 -4.9976 4.8699 23 6 12.1049 -3.7399 4.4082 24 8 11.1624 -3.7583 3.4569 25 6 8.5943 -6.0174 -0.4258 26 6 8.9173 -5.1772 -1.6861 27 6 7.7564 -4.1535 -1.7209 28 6 7.5093 -3.8022 -0.2392 29 1 7.9877 -2.8638 0.0410 30 1 -0.4849 0.8400 0.0004 31 1 3.8649 -0.3633 -0.0004 32 1 5.9241 -1.8568 0.8900 33 1 5.9241 -1.8568 -0.8899 34 1 6.0656 -3.7025 2.1295 35 1 4.8082 -4.7596 1.4093 36 1 6.4268 -6.4230 0.7534 37 1 7.0898 -5.8761 2.3285 38 1 9.3457 -3.6185 1.5828 39 1 11.2694 -6.8906 4.2876 40 1 12.9721 -5.3073 5.6401 41 1 12.6369 -2.8642 4.7497 42 1 9.4962 -6.4965 -0.0450 43 1 7.8305 -6.7623 -0.6492 44 1 8.9086 -5.8017 -2.5795 45 1 9.8765 -4.6702 -1.5805 46 1 6.8654 -4.6029 -2.1593 47 1 8.0495 -3.2643 -2.2791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725588952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:14 Heat of formation + Delta-G solvation = -33.547376 kcal Electronic energy + Delta-G solvation = -30904.631987 eV Core-core repulsion = 26668.497389 eV Total energy + Delta-G solvation = -4236.134598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.06163 -40.94791 -38.99386 -38.03870 -35.11966 -34.13295 -33.83023 -33.37780 -31.77697 -31.46554 -30.08332 -28.44531 -26.85120 -25.83379 -23.91757 -23.74642 -22.19290 -21.62225 -20.85853 -20.16700 -19.57300 -19.33442 -18.66864 -18.32393 -16.84398 -16.71289 -16.43624 -16.10600 -15.34983 -15.23069 -14.84502 -14.79637 -14.72531 -14.16927 -13.97738 -13.84465 -13.48041 -13.39958 -13.24681 -13.08726 -12.98067 -12.63201 -12.35790 -12.17634 -11.93047 -11.63948 -11.42749 -11.24996 -11.15421 -11.01671 -10.87351 -10.85568 -10.59812 -10.54849 -10.46980 -10.34757 -9.96735 -9.54975 -9.35218 -9.03706 -8.61260 -8.17570 -8.10172 -6.29942 -3.81151 0.69424 1.96030 2.28892 2.84542 2.87934 3.01820 3.06435 3.14641 3.75318 3.91981 4.08813 4.11356 4.30906 4.44186 4.49671 4.62835 4.71195 4.83529 5.12710 5.14592 5.17202 5.19075 5.22621 5.26313 5.36093 5.41218 5.48197 5.51222 5.57430 5.64977 5.65889 5.79053 5.84867 5.89948 5.91448 5.95749 6.00230 6.07352 6.14275 6.28634 6.35940 6.41451 6.46336 7.03995 7.10856 7.19258 7.59628 7.79669 8.15775 8.61726 8.96841 9.43797 9.85338 10.83338 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.002536 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.675529 B =11038.016678 C =11962.230137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.040 3.960 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.303 4.303 8 H 0.120 0.880 9 N -0.593 5.593 10 C 0.455 3.545 11 O -0.556 6.556 12 C 0.033 3.967 13 N -0.479 5.479 14 C 0.038 3.962 15 C -0.120 4.120 16 C 0.163 3.837 17 N -0.704 5.704 18 C 0.604 3.396 19 O -0.511 6.511 20 C -0.079 4.079 21 C -0.121 4.121 22 C -0.226 4.226 23 C -0.007 4.007 24 O -0.165 6.165 25 C -0.116 4.116 26 C -0.125 4.125 27 C -0.109 4.109 28 C 0.061 3.939 29 H 0.063 0.937 30 H 0.273 0.727 31 H 0.369 0.631 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.403 0.597 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.210 0.790 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.089 0.911 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.217 -5.515 5.202 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.431 4.431 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.241 3.759 11 O -0.437 6.437 12 C -0.099 4.099 13 N -0.203 5.203 14 C -0.089 4.089 15 C -0.158 4.158 16 C 0.077 3.923 17 N -0.354 5.354 18 C 0.390 3.610 19 O -0.388 6.388 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.245 4.245 23 C -0.077 4.077 24 O -0.060 6.060 25 C -0.154 4.154 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.048 4.048 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.202 0.798 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.238 0.762 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.227 0.773 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 26.908 -6.970 4.551 28.166 hybrid contribution 1.334 2.509 1.019 3.018 sum 28.241 -4.461 5.570 29.129 Atomic orbital electron populations 1.69621 1.05614 1.27425 1.49595 1.25034 0.95484 0.97924 0.97786 0.86676 0.79714 0.84143 0.78858 1.19625 1.20236 1.19617 1.19420 0.79203 0.96599 1.47912 0.86278 1.42207 1.07519 1.06089 1.67518 1.19567 0.87890 0.84566 0.83906 1.90557 1.69292 1.30811 1.53076 1.22126 0.96066 0.90186 1.01558 1.64657 1.10164 1.15434 1.30071 1.23366 1.01700 0.94902 0.88942 1.22909 0.93271 0.98428 1.01236 1.21639 0.87273 0.94842 0.88565 1.45947 1.39945 1.11230 1.38292 1.16512 0.79640 0.85685 0.79177 1.90900 1.62925 1.16434 1.68512 1.22196 1.03691 0.82485 1.04726 1.22001 0.95663 1.01387 0.95104 1.21889 1.04370 0.93031 1.05174 1.24435 0.92177 1.00235 0.90870 1.84068 1.44723 1.29591 1.47650 1.22642 1.01989 0.96902 0.93881 1.22537 0.98079 0.97599 0.98032 1.22376 0.99236 0.98945 0.94154 1.23256 0.89437 0.95927 0.96206 0.91921 0.91657 0.79820 0.93241 0.89205 0.94451 0.87951 0.89354 0.90578 0.76164 0.82167 0.82549 0.77318 0.90890 0.89838 0.91130 0.91949 0.89205 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 2 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 3 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 7 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 8 H 0.12 3.85 7.39 -52.49 -0.39 3.47 16 9 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 10 C 0.46 10.27 7.61 -10.98 -0.08 10.18 16 11 O -0.56 -14.79 14.62 5.54 0.08 -14.71 16 12 C 0.03 0.54 5.22 -4.98 -0.03 0.51 16 13 N -0.48 -7.47 4.37 -222.84 -0.97 -8.45 16 14 C 0.04 0.60 5.93 -1.94 -0.01 0.59 16 15 C -0.12 -1.63 5.85 -24.96 -0.15 -1.77 16 16 C 0.16 1.89 0.83 -129.61 -0.11 1.79 16 17 N -0.70 -7.33 5.25 -46.86 -0.25 -7.58 16 18 C 0.60 7.06 6.84 -12.86 -0.09 6.98 16 19 O -0.51 -7.26 14.40 5.20 0.07 -7.19 16 20 C -0.08 -0.80 7.13 -36.80 -0.26 -1.07 16 21 C -0.12 -1.10 10.62 -39.40 -0.42 -1.51 16 22 C -0.23 -1.51 10.87 -39.89 -0.43 -1.94 16 23 C -0.01 -0.04 12.08 29.63 0.36 0.31 16 24 O -0.17 -1.43 10.40 4.99 0.05 -1.38 16 25 C -0.12 -1.29 5.66 -25.16 -0.14 -1.43 16 26 C -0.12 -1.19 6.90 -24.78 -0.17 -1.36 16 27 C -0.11 -1.19 6.51 -25.11 -0.16 -1.35 16 28 C 0.06 0.73 3.05 -65.61 -0.20 0.53 16 29 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 32 H 0.05 0.73 7.84 -51.93 -0.41 0.32 16 33 H 0.09 1.29 8.08 -51.93 -0.42 0.87 16 34 H 0.04 0.57 7.81 -51.93 -0.41 0.16 16 35 H 0.10 1.92 7.08 -51.93 -0.37 1.55 16 36 H 0.09 1.23 7.22 -51.93 -0.37 0.85 16 37 H 0.08 1.07 6.86 -51.93 -0.36 0.71 16 38 H 0.40 3.50 8.03 -40.82 -0.33 3.17 16 39 H 0.16 1.35 8.06 -52.48 -0.42 0.92 16 40 H 0.16 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.21 0.40 8.06 -52.49 -0.42 -0.02 16 42 H 0.07 0.86 6.67 -51.93 -0.35 0.52 16 43 H 0.08 0.97 7.22 -51.93 -0.37 0.59 16 44 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.15 7.97 -51.93 -0.41 0.74 16 47 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -34.27 379.51 -7.94 -42.21 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -6.50 Total: 13.19 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.14 Total: 2.76 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.50 Total: -55.22 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.21 Total: -23.28 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.27 -7.94 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725588952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.660 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds