Wall clock time and date at job start Wed Apr 1 2020 05:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48493 * 109.47091 * 270.00025 * 3 2 1 5 5 H 1.48503 * 109.47096 * 30.00522 * 3 2 1 6 6 H 1.48502 * 109.46752 * 149.99905 * 3 2 1 7 7 C 1.38954 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99909 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99833 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99863 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99826 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00017 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46932 * 179.97438 * 12 10 9 14 14 C 1.48478 * 111.00314 * 287.61102 * 13 12 10 15 15 C 1.54921 * 103.22005 * 200.17033 * 14 13 12 16 16 C 1.54445 * 102.94183 * 37.70819 * 15 14 13 17 17 N 1.46498 * 111.71700 * 98.97576 * 16 15 14 18 18 C 1.34783 * 119.99948 * 62.56085 * 17 16 15 19 19 O 1.21690 * 119.99989 * 0.02562 * 18 17 16 20 20 C 1.46662 * 119.99987 * 179.97438 * 18 17 16 21 21 C 1.36535 * 125.98585 * 179.71745 * 20 18 17 22 22 C 1.40366 * 106.70583 * 179.85275 * 21 20 18 23 23 C 1.35130 * 107.11610 * 0.41176 * 22 21 20 24 24 O 1.33932 * 108.76474 * 359.74367 * 23 22 21 25 25 C 1.54109 * 109.03599 * 223.76598 * 16 15 14 26 26 C 1.54883 * 104.15604 * 137.48275 * 25 16 15 27 27 C 1.54822 * 102.74099 * 321.54648 * 26 25 16 28 28 C 1.47921 * 110.99792 * 170.00006 * 13 12 10 29 29 H 1.09000 * 111.35312 * 23.75723 * 28 13 12 30 30 H 0.96993 * 119.99690 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00316 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47091 * 59.99925 * 12 10 9 33 33 H 1.08994 * 109.47591 * 300.00022 * 12 10 9 34 34 H 1.08999 * 110.66641 * 318.60148 * 14 13 12 35 35 H 1.09003 * 110.66732 * 81.73326 * 14 13 12 36 36 H 1.08999 * 110.71854 * 279.34346 * 15 14 13 37 37 H 1.09006 * 110.71867 * 156.07228 * 15 14 13 38 38 H 0.97000 * 120.00123 * 242.56226 * 17 16 15 39 39 H 1.08005 * 126.64890 * 359.96758 * 21 20 18 40 40 H 1.08001 * 126.44047 * 180.15639 * 22 21 20 41 41 H 1.07997 * 125.61664 * 179.78191 * 23 22 21 42 42 H 1.08997 * 110.49604 * 256.15113 * 25 16 15 43 43 H 1.08999 * 110.48984 * 18.82039 * 25 16 15 44 44 H 1.09008 * 110.75891 * 203.23301 * 26 25 16 45 45 H 1.09005 * 110.91618 * 79.93616 * 26 25 16 46 46 H 1.08998 * 110.44560 * 279.06217 * 27 26 25 47 47 H 1.09007 * 110.44370 * 156.53095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4400 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3706 0.0000 13 7 6.0503 -3.7556 0.0006 14 6 5.8323 -4.3966 1.3221 15 6 6.8328 -5.5793 1.3116 16 6 8.0619 -4.9863 0.5883 17 7 9.0919 -4.5535 1.5359 18 6 9.6868 -5.4546 2.3426 19 8 9.3687 -6.6277 2.2835 20 6 10.7183 -5.0214 3.2909 21 6 11.3932 -5.8248 4.1646 22 6 12.2812 -4.9976 4.8699 23 6 12.1049 -3.7399 4.4082 24 8 11.1624 -3.7583 3.4569 25 6 8.5943 -6.0174 -0.4258 26 6 8.9173 -5.1772 -1.6861 27 6 7.7564 -4.1535 -1.7209 28 6 7.5093 -3.8022 -0.2392 29 1 7.9877 -2.8638 0.0410 30 1 -0.4849 0.8400 0.0004 31 1 3.8649 -0.3633 -0.0004 32 1 5.9241 -1.8568 0.8900 33 1 5.9241 -1.8568 -0.8899 34 1 6.0656 -3.7025 2.1295 35 1 4.8082 -4.7596 1.4093 36 1 6.4268 -6.4230 0.7534 37 1 7.0898 -5.8761 2.3285 38 1 9.3457 -3.6185 1.5828 39 1 11.2694 -6.8906 4.2876 40 1 12.9721 -5.3073 5.6401 41 1 12.6369 -2.8642 4.7497 42 1 9.4962 -6.4965 -0.0450 43 1 7.8305 -6.7623 -0.6492 44 1 8.9086 -5.8017 -2.5795 45 1 9.8765 -4.6702 -1.5805 46 1 6.8654 -4.6029 -2.1593 47 1 8.0495 -3.2643 -2.2791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725588952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:13 Heat of formation + Delta-G solvation = -60.464473 kcal Electronic energy + Delta-G solvation = -30905.799200 eV Core-core repulsion = 26668.497389 eV Total energy + Delta-G solvation = -4237.301811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.64659 -41.94072 -40.33978 -39.47128 -36.39692 -35.73150 -34.96156 -34.00156 -33.75097 -32.64935 -30.79276 -29.63310 -27.84467 -27.31977 -25.44960 -24.63642 -22.79456 -22.59077 -21.81631 -21.26518 -20.93409 -20.49768 -20.20798 -19.43329 -17.89540 -17.58227 -17.35706 -17.17775 -16.76953 -16.48296 -16.32790 -15.90296 -15.72997 -15.37419 -15.25188 -14.91448 -14.82789 -14.44159 -14.25829 -14.13622 -14.04993 -13.93309 -13.58365 -13.44645 -13.00730 -12.98678 -12.72792 -12.57533 -12.40211 -12.17883 -12.03103 -12.00539 -11.92668 -11.77459 -11.48736 -11.43587 -11.28326 -11.05071 -10.41296 -10.24268 -10.21552 -9.65095 -9.39194 -8.40007 -6.00767 0.02309 1.29999 1.36461 1.42660 1.44917 1.61605 1.98153 2.08010 2.09822 2.23996 2.64213 3.05686 3.15998 3.31145 3.50796 3.71044 3.76599 3.95346 4.07172 4.11370 4.12790 4.19407 4.24470 4.30254 4.37787 4.39583 4.49843 4.61769 4.62970 4.73051 4.76656 4.89114 4.90661 4.95568 4.97288 5.02539 5.11965 5.18423 5.24135 5.35674 5.39710 5.51384 5.54963 5.79532 5.86091 5.94561 6.07042 6.39193 6.61408 6.90332 6.97539 7.41583 7.99868 8.77893 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.002536 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.675529 B =11038.016678 C =11962.230137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.018 4.018 3 Si 0.966 3.034 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.230 1.230 7 C -0.326 4.326 8 H 0.053 0.947 9 N -0.593 5.593 10 C 0.453 3.547 11 O -0.607 6.607 12 C 0.044 3.956 13 N -0.502 5.502 14 C 0.042 3.958 15 C -0.114 4.114 16 C 0.170 3.830 17 N -0.693 5.693 18 C 0.603 3.397 19 O -0.547 6.547 20 C -0.109 4.109 21 C -0.128 4.128 22 C -0.236 4.236 23 C 0.011 3.989 24 O -0.170 6.170 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.107 4.107 28 C 0.066 3.934 29 H 0.093 0.907 30 H 0.278 0.722 31 H 0.389 0.611 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.415 0.585 39 H 0.157 0.843 40 H 0.181 0.819 41 H 0.254 0.746 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.083 -2.101 5.422 33.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.216 4.216 3 Si 0.786 3.214 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.154 1.154 7 C -0.455 4.455 8 H 0.071 0.929 9 N -0.235 5.235 10 C 0.241 3.759 11 O -0.490 6.490 12 C -0.087 4.087 13 N -0.226 5.226 14 C -0.086 4.086 15 C -0.153 4.153 16 C 0.083 3.917 17 N -0.344 5.344 18 C 0.391 3.609 19 O -0.427 6.427 20 C -0.161 4.161 21 C -0.148 4.148 22 C -0.255 4.255 23 C -0.059 4.059 24 O -0.066 6.066 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.145 4.145 28 C -0.043 4.043 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.225 0.775 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.252 0.748 39 H 0.174 0.826 40 H 0.199 0.801 41 H 0.270 0.730 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 31.816 -3.546 4.767 32.366 hybrid contribution -0.199 1.292 1.030 1.664 sum 31.617 -2.254 5.797 32.223 Atomic orbital electron populations 1.69813 1.08196 1.29194 1.50550 1.26141 0.96483 1.02793 0.96176 0.85347 0.79451 0.76601 0.79985 1.18023 1.20177 1.15365 1.18975 0.81513 0.94820 1.50183 0.92893 1.42020 1.05755 1.07546 1.68228 1.20854 0.90736 0.83303 0.81050 1.90548 1.71284 1.32738 1.54434 1.22063 0.90636 0.91376 1.04618 1.64564 1.13073 1.15183 1.29778 1.23180 0.99798 0.95861 0.89711 1.22793 0.94046 0.97445 1.00981 1.21491 0.86701 0.94995 0.88503 1.45788 1.39225 1.11692 1.37720 1.16719 0.79686 0.85303 0.79207 1.90876 1.64250 1.17896 1.69681 1.21863 1.04826 0.83550 1.05830 1.22254 0.95884 1.01639 0.95060 1.22222 1.04521 0.92971 1.05772 1.25372 0.90296 1.01466 0.88720 1.84058 1.45411 1.28621 1.48494 1.22595 1.01183 0.96843 0.94786 1.22493 0.98309 0.97045 0.97245 1.22366 0.98746 1.00062 0.93357 1.23352 0.86929 0.97127 0.96869 0.88937 0.91211 0.77517 0.90123 0.85670 0.93649 0.92229 0.90606 0.91335 0.74793 0.82566 0.80126 0.72991 0.91601 0.91174 0.90246 0.90136 0.91585 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.91 13.96 21.66 0.30 -56.61 16 2 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 3 Si 0.97 38.58 27.74 68.60 1.90 40.48 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.23 -7.64 6.52 99.48 0.65 -7.00 16 7 C -0.33 -19.19 10.16 84.04 0.85 -18.34 16 8 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 9 N -0.59 -27.94 5.09 -306.97 -1.56 -29.50 16 10 C 0.45 20.50 7.61 87.66 0.67 21.17 16 11 O -0.61 -34.04 14.62 -3.08 -0.04 -34.08 16 12 C 0.04 1.34 5.22 85.56 0.45 1.79 16 13 N -0.50 -15.09 4.37 -858.93 -3.76 -18.84 16 14 C 0.04 1.36 5.93 86.65 0.51 1.87 16 15 C -0.11 -3.21 5.85 31.74 0.19 -3.02 16 16 C 0.17 3.77 0.83 5.04 0.00 3.77 16 17 N -0.69 -13.30 5.25 -420.37 -2.21 -15.51 16 18 C 0.60 13.83 6.84 86.44 0.59 14.43 16 19 O -0.55 -15.99 14.40 -4.32 -0.06 -16.05 16 20 C -0.11 -2.09 7.13 24.07 0.17 -1.92 16 21 C -0.13 -2.18 10.62 22.39 0.24 -1.94 16 22 C -0.24 -2.49 10.87 22.07 0.24 -2.25 16 23 C 0.01 0.09 12.08 67.10 0.81 0.90 16 24 O -0.17 -2.48 10.40 -5.05 -0.05 -2.53 16 25 C -0.12 -2.49 5.66 31.61 0.18 -2.31 16 26 C -0.11 -1.87 6.90 31.86 0.22 -1.65 16 27 C -0.11 -2.04 6.51 31.65 0.21 -1.83 16 28 C 0.07 1.39 3.05 45.72 0.14 1.52 16 29 H 0.09 1.46 7.35 -2.39 -0.02 1.44 16 30 H 0.28 15.45 8.31 -92.71 -0.77 14.67 16 31 H 0.39 15.00 5.76 -92.71 -0.53 14.46 16 32 H 0.08 2.00 7.84 -2.39 -0.02 1.98 16 33 H 0.13 2.97 8.08 -2.39 -0.02 2.95 16 34 H 0.05 1.36 7.81 -2.39 -0.02 1.34 16 35 H 0.06 2.41 7.08 -2.39 -0.02 2.40 16 36 H 0.08 2.29 7.22 -2.39 -0.02 2.27 16 37 H 0.07 2.02 6.86 -2.38 -0.02 2.01 16 38 H 0.41 5.97 8.03 -92.71 -0.74 5.22 16 39 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.25 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.07 1.53 6.67 -2.39 -0.02 1.52 16 43 H 0.07 1.68 7.22 -2.39 -0.02 1.66 16 44 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.07 1.61 7.97 -2.39 -0.02 1.59 16 47 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -83.50 379.51 0.14 -83.36 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -0.31 Total: 37.63 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.93 Total: 11.66 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -7.22 Total: -120.46 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -0.16 Total: -52.67 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.48 kcal Total: -83.50 0.14 -83.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725588952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.896 kcal (2) G-P(sol) polarization free energy of solvation -83.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds