Wall clock time and date at job start Wed Apr 1 2020 04:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00228 * 2 1 4 4 H 1.48493 * 109.47059 * 89.99831 * 3 2 1 5 5 H 1.48497 * 109.46909 * 210.00012 * 3 2 1 6 6 H 1.48502 * 109.46932 * 329.99957 * 3 2 1 7 7 C 1.38813 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99591 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00074 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47357 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.88558 * 57.42402 * 11 10 9 13 13 C 1.55157 * 111.00872 * 181.35006 * 11 10 9 14 14 C 1.54322 * 102.94210 * 153.57325 * 13 11 10 15 15 N 1.47018 * 107.27286 * 337.81213 * 14 13 11 16 16 C 1.34778 * 125.64689 * 178.97938 * 15 14 13 17 17 O 1.21553 * 119.99922 * 174.76913 * 16 15 14 18 18 C 1.47864 * 119.99960 * 354.76450 * 16 15 14 19 19 C 1.39597 * 120.11599 * 187.93542 * 18 16 15 20 20 C 1.37964 * 119.96529 * 180.02562 * 19 18 16 21 21 C 1.38283 * 120.20760 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.24015 * 359.97438 * 21 20 19 23 23 O 1.35906 * 119.99154 * 180.02562 * 22 21 20 24 24 C 1.42903 * 116.99717 * 359.97438 * 23 22 21 25 25 C 1.50699 * 109.47099 * 180.02562 * 24 23 22 26 26 N 1.34779 * 119.99938 * 180.02562 * 25 24 23 27 27 O 1.21282 * 120.00186 * 0.02562 * 25 24 23 28 28 C 1.38506 * 120.02787 * 359.72092 * 22 21 20 29 29 C 1.47423 * 108.70508 * 358.93415 * 15 14 13 30 30 H 0.96999 * 119.99296 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00052 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47010 * 300.00450 * 10 9 7 33 33 H 1.08996 * 109.47031 * 60.00003 * 10 9 7 34 34 H 1.08994 * 110.72024 * 271.94196 * 13 11 10 35 35 H 1.09005 * 110.71648 * 35.21457 * 13 11 10 36 36 H 1.08998 * 109.88196 * 218.38743 * 14 13 11 37 37 H 1.09001 * 110.00492 * 97.30207 * 14 13 11 38 38 H 1.08004 * 120.02372 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.89998 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.88390 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47332 * 300.00770 * 24 23 22 42 42 H 1.09005 * 109.46758 * 60.00184 * 24 23 22 43 43 H 0.97001 * 120.00143 * 359.97438 * 26 25 24 44 44 H 0.96999 * 120.00066 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.10497 * 180.27682 * 28 22 21 46 46 H 1.08993 * 110.37028 * 265.29082 * 29 15 14 47 47 H 1.09000 * 110.45690 * 143.01483 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.3947 -4.7586 -0.8586 13 6 1.8028 -6.1835 0.0340 14 6 0.7713 -7.1192 0.6988 15 7 -0.1569 -6.2729 1.4629 16 6 -1.2158 -6.7106 2.1726 17 8 -1.8613 -5.9303 2.8449 18 6 -1.5925 -8.1399 2.1332 19 6 -2.7797 -8.5681 2.7297 20 6 -3.1278 -9.9026 2.6916 21 6 -2.3038 -10.8189 2.0643 22 6 -1.1213 -10.4026 1.4684 23 8 -0.3155 -11.3074 0.8528 24 6 -0.7472 -12.6696 0.8577 25 6 0.2655 -13.5202 0.1352 26 7 0.0667 -14.8477 0.0139 27 8 1.2594 -13.0101 -0.3370 28 6 -0.7653 -9.0643 1.4953 29 6 0.2632 -4.8665 1.3254 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 2.6846 -3.7145 -0.8894 33 1 2.6846 -3.7146 0.8905 34 1 2.0355 -6.5214 -0.9758 35 1 2.7080 -6.1165 0.6376 36 1 1.2782 -7.8129 1.3694 37 1 0.2248 -7.6737 -0.0641 38 1 -3.4251 -7.8553 3.2216 39 1 -4.0468 -10.2326 3.1531 40 1 -2.5816 -11.8622 2.0372 41 1 -0.8446 -13.0162 1.8865 42 1 -1.7116 -12.7469 0.3556 43 1 -0.7280 -15.2557 0.3919 44 1 0.7187 -15.3952 -0.4509 45 1 0.1522 -8.7383 1.0281 46 1 0.8982 -4.5766 2.1625 47 1 -0.6071 -4.2130 1.2662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731660898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:22 Heat of formation + Delta-G solvation = -40.877933 kcal Electronic energy + Delta-G solvation = -29551.469244 eV Core-core repulsion = 25315.016770 eV Total energy + Delta-G solvation = -4236.452475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.04213 -40.24685 -39.31894 -37.86450 -37.03669 -34.74295 -34.34433 -32.65914 -31.42129 -30.72906 -30.33617 -28.91340 -28.39177 -25.78735 -24.48598 -22.95995 -22.76276 -21.91492 -21.35728 -20.27721 -19.87954 -18.40351 -18.17078 -17.33202 -16.95134 -16.89546 -16.58950 -16.36189 -16.15173 -15.82005 -15.21390 -14.82540 -14.63806 -14.39045 -14.22217 -14.01227 -13.78039 -13.45661 -13.24010 -13.12634 -12.96417 -12.72238 -12.46750 -12.19944 -12.04527 -11.81643 -11.54142 -11.40530 -10.98599 -10.82535 -10.57544 -10.55733 -10.46240 -10.37913 -10.35521 -9.97625 -9.87620 -9.63518 -9.35677 -8.84170 -8.69270 -8.48276 -6.88801 -5.71789 -3.01111 0.55985 1.07895 1.96303 2.12442 2.74899 2.98234 3.26272 3.47579 3.52225 3.54176 3.62126 4.08722 4.26806 4.32155 4.39350 4.43784 4.55935 4.62824 4.69347 4.86894 4.98089 4.99569 5.01413 5.13121 5.32355 5.42215 5.53176 5.62383 5.64553 5.82924 5.93033 5.98893 6.00114 6.04649 6.08160 6.09254 6.14866 6.24379 6.30675 6.42571 6.48542 6.59255 6.72849 6.86420 6.91075 7.55629 7.59915 7.73962 8.17985 8.46456 9.57673 10.14743 10.49118 11.50896 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.001995 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.299387 B =14032.331385 C =15455.277886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.106 4.106 12 H 0.085 0.915 13 C -0.128 4.128 14 C 0.089 3.911 15 N -0.609 5.609 16 C 0.568 3.432 17 O -0.530 6.530 18 C -0.084 4.084 19 C -0.096 4.096 20 C -0.088 4.088 21 C -0.191 4.191 22 C 0.117 3.883 23 O -0.288 6.288 24 C 0.039 3.961 25 C 0.519 3.481 26 N -0.851 5.851 27 O -0.514 6.514 28 C -0.151 4.151 29 C 0.116 3.884 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.403 0.597 44 H 0.409 0.591 45 H 0.173 0.827 46 H 0.074 0.926 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.111 -35.212 2.701 35.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.166 4.166 14 C -0.034 4.034 15 N -0.342 5.342 16 C 0.357 3.643 17 O -0.408 6.408 18 C -0.087 4.087 19 C -0.115 4.115 20 C -0.107 4.107 21 C -0.210 4.210 22 C 0.072 3.928 23 O -0.201 6.201 24 C -0.040 4.040 25 C 0.302 3.698 26 N -0.418 5.418 27 O -0.387 6.387 28 C -0.170 4.170 29 C -0.005 4.005 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.231 0.769 44 H 0.241 0.759 45 H 0.189 0.811 46 H 0.092 0.908 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.600 -34.115 2.756 34.533 hybrid contribution -0.287 0.146 0.095 0.336 sum -4.888 -33.968 2.851 34.436 Atomic orbital electron populations 1.69666 1.05099 1.25662 1.57581 1.24757 0.95522 0.97719 1.02982 0.86184 0.78601 0.83861 0.77498 1.21731 1.20792 1.21806 1.19212 0.91021 0.84130 1.42845 0.91148 1.42365 1.05915 0.99932 1.89539 1.20590 0.92715 0.84755 0.98258 1.22599 0.97865 0.94805 0.97235 0.89621 1.22733 0.97781 0.94579 1.01518 1.22570 0.91452 0.94103 0.95247 1.48458 1.27234 1.09563 1.48992 1.17833 0.79607 0.87304 0.79529 1.90812 1.52573 1.56553 1.40860 1.19760 0.96110 0.92841 1.00031 1.21243 0.95779 0.96106 0.98390 1.20904 0.99246 0.92459 0.98042 1.21401 0.95599 1.00656 1.03358 1.18852 0.90192 0.89407 0.94306 1.86160 1.45884 1.15257 1.72805 1.22440 0.97625 0.82025 1.01903 1.20053 0.86892 0.82892 0.79988 1.43655 1.28423 1.08150 1.61602 1.90841 1.28872 1.72459 1.46564 1.22069 1.03290 0.89866 1.01730 1.22374 0.99779 0.80544 0.97797 0.93495 0.78196 0.95726 0.95964 0.89673 0.90049 0.90436 0.90294 0.84310 0.84935 0.85286 0.88748 0.88719 0.76874 0.75865 0.81091 0.90755 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.68 5.45 -59.91 -0.33 -19.00 16 10 C 0.16 3.25 5.71 -4.04 -0.02 3.22 16 11 C -0.11 -1.68 3.10 -88.47 -0.27 -1.96 16 12 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.13 -1.52 6.42 -24.90 -0.16 -1.68 16 14 C 0.09 1.03 4.88 -3.07 -0.01 1.01 16 15 N -0.61 -9.19 3.33 -175.35 -0.58 -9.78 16 16 C 0.57 9.20 7.81 -12.32 -0.10 9.11 16 17 O -0.53 -10.52 16.67 5.32 0.09 -10.43 16 18 C -0.08 -1.09 5.87 -104.99 -0.62 -1.70 16 19 C -0.10 -1.07 9.59 -39.18 -0.38 -1.45 16 20 C -0.09 -0.72 10.03 -39.67 -0.40 -1.12 16 21 C -0.19 -1.42 9.03 -39.35 -0.36 -1.77 16 22 C 0.12 1.13 6.68 -39.27 -0.26 0.87 16 23 O -0.29 -2.78 9.67 -39.35 -0.38 -3.16 16 24 C 0.04 0.20 5.22 36.00 0.19 0.39 16 25 C 0.52 3.48 8.18 -10.99 -0.09 3.39 16 26 N -0.85 -1.74 8.87 31.22 0.28 -1.46 16 27 O -0.51 -6.35 17.34 -14.35 -0.25 -6.60 16 28 C -0.15 -1.70 8.54 -39.02 -0.33 -2.03 16 29 C 0.12 2.01 6.06 -2.53 -0.02 1.99 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 31 H 0.38 10.37 7.53 -40.82 -0.31 10.06 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 36 H 0.08 0.79 6.82 -51.93 -0.35 0.43 16 37 H 0.08 0.83 6.64 -51.93 -0.34 0.48 16 38 H 0.14 1.58 7.67 -52.48 -0.40 1.18 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.50 6.28 -52.49 -0.33 0.17 16 41 H 0.09 0.23 7.66 -51.93 -0.40 -0.17 16 42 H 0.09 0.23 7.66 -51.93 -0.40 -0.17 16 43 H 0.40 -0.61 8.83 -40.82 -0.36 -0.97 16 44 H 0.41 0.65 8.93 -40.82 -0.36 0.28 16 45 H 0.17 1.82 2.77 -57.31 -0.16 1.66 16 46 H 0.07 1.34 8.00 -51.93 -0.42 0.92 16 47 H 0.09 1.70 8.09 -51.93 -0.42 1.27 16 LS Contribution 389.49 15.07 5.87 5.87 Total: -1.00 -39.08 389.49 -9.00 -48.08 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.33 Total: 5.95 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -3.07 Total: 0.80 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.09 Total: -58.30 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.54 Total: -20.18 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.08 -9.00 -48.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731660898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.201 kcal (2) G-P(sol) polarization free energy of solvation -39.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds