Wall clock time and date at job start Wed Apr 1 2020 04:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00228 * 2 1 4 4 H 1.48493 * 109.47059 * 89.99831 * 3 2 1 5 5 H 1.48497 * 109.46909 * 210.00012 * 3 2 1 6 6 H 1.48502 * 109.46932 * 329.99957 * 3 2 1 7 7 C 1.38813 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99591 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00074 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47357 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.88558 * 57.42402 * 11 10 9 13 13 C 1.55157 * 111.00872 * 181.35006 * 11 10 9 14 14 C 1.54322 * 102.94210 * 153.57325 * 13 11 10 15 15 N 1.47018 * 107.27286 * 337.81213 * 14 13 11 16 16 C 1.34778 * 125.64689 * 178.97938 * 15 14 13 17 17 O 1.21553 * 119.99922 * 174.76913 * 16 15 14 18 18 C 1.47864 * 119.99960 * 354.76450 * 16 15 14 19 19 C 1.39597 * 120.11599 * 187.93542 * 18 16 15 20 20 C 1.37964 * 119.96529 * 180.02562 * 19 18 16 21 21 C 1.38283 * 120.20760 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.24015 * 359.97438 * 21 20 19 23 23 O 1.35906 * 119.99154 * 180.02562 * 22 21 20 24 24 C 1.42903 * 116.99717 * 359.97438 * 23 22 21 25 25 C 1.50699 * 109.47099 * 180.02562 * 24 23 22 26 26 N 1.34779 * 119.99938 * 180.02562 * 25 24 23 27 27 O 1.21282 * 120.00186 * 0.02562 * 25 24 23 28 28 C 1.38506 * 120.02787 * 359.72092 * 22 21 20 29 29 C 1.47423 * 108.70508 * 358.93415 * 15 14 13 30 30 H 0.96999 * 119.99296 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00052 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47010 * 300.00450 * 10 9 7 33 33 H 1.08996 * 109.47031 * 60.00003 * 10 9 7 34 34 H 1.08994 * 110.72024 * 271.94196 * 13 11 10 35 35 H 1.09005 * 110.71648 * 35.21457 * 13 11 10 36 36 H 1.08998 * 109.88196 * 218.38743 * 14 13 11 37 37 H 1.09001 * 110.00492 * 97.30207 * 14 13 11 38 38 H 1.08004 * 120.02372 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.89998 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.88390 * 180.02562 * 21 20 19 41 41 H 1.08998 * 109.47332 * 300.00770 * 24 23 22 42 42 H 1.09005 * 109.46758 * 60.00184 * 24 23 22 43 43 H 0.97001 * 120.00143 * 359.97438 * 26 25 24 44 44 H 0.96999 * 120.00066 * 180.02562 * 26 25 24 45 45 H 1.08001 * 120.10497 * 180.27682 * 28 22 21 46 46 H 1.08993 * 110.37028 * 265.29082 * 29 15 14 47 47 H 1.09000 * 110.45690 * 143.01483 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.3947 -4.7586 -0.8586 13 6 1.8028 -6.1835 0.0340 14 6 0.7713 -7.1192 0.6988 15 7 -0.1569 -6.2729 1.4629 16 6 -1.2158 -6.7106 2.1726 17 8 -1.8613 -5.9303 2.8449 18 6 -1.5925 -8.1399 2.1332 19 6 -2.7797 -8.5681 2.7297 20 6 -3.1278 -9.9026 2.6916 21 6 -2.3038 -10.8189 2.0643 22 6 -1.1213 -10.4026 1.4684 23 8 -0.3155 -11.3074 0.8528 24 6 -0.7472 -12.6696 0.8577 25 6 0.2655 -13.5202 0.1352 26 7 0.0667 -14.8477 0.0139 27 8 1.2594 -13.0101 -0.3370 28 6 -0.7653 -9.0643 1.4953 29 6 0.2632 -4.8665 1.3254 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 2.6846 -3.7145 -0.8894 33 1 2.6846 -3.7146 0.8905 34 1 2.0355 -6.5214 -0.9758 35 1 2.7080 -6.1165 0.6376 36 1 1.2782 -7.8129 1.3694 37 1 0.2248 -7.6737 -0.0641 38 1 -3.4251 -7.8553 3.2216 39 1 -4.0468 -10.2326 3.1531 40 1 -2.5816 -11.8622 2.0372 41 1 -0.8446 -13.0162 1.8865 42 1 -1.7116 -12.7469 0.3556 43 1 -0.7280 -15.2557 0.3919 44 1 0.7187 -15.3952 -0.4509 45 1 0.1522 -8.7383 1.0281 46 1 0.8982 -4.5766 2.1625 47 1 -0.6071 -4.2130 1.2662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731660898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:21 Heat of formation + Delta-G solvation = -71.482788 kcal Electronic energy + Delta-G solvation = -29552.796370 eV Core-core repulsion = 25315.016770 eV Total energy + Delta-G solvation = -4237.779601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.88497 -41.06289 -40.02262 -39.01967 -37.92039 -36.53112 -34.74723 -34.19729 -32.64596 -31.87551 -31.31183 -30.08899 -29.06755 -27.31245 -25.86261 -24.35797 -23.57443 -23.12132 -21.93154 -21.40951 -21.02114 -19.34026 -18.90595 -18.64551 -18.00682 -17.54075 -17.33930 -17.27488 -16.99291 -16.68374 -16.56196 -16.17722 -15.73585 -15.35331 -15.29958 -15.17709 -14.81221 -14.76971 -14.66327 -14.14889 -14.11987 -13.86547 -13.47441 -13.39338 -13.12222 -12.97790 -12.78874 -12.74850 -12.40400 -12.16564 -12.09117 -12.01093 -11.77940 -11.65752 -11.45357 -11.11683 -11.03763 -10.93997 -10.70297 -10.12183 -9.83321 -9.29008 -9.00461 -7.94762 -5.24274 -0.26041 0.36074 1.46585 1.49230 1.53430 1.57538 1.65811 1.70103 1.84599 2.55959 2.76879 2.83965 3.28611 3.39237 3.51898 3.62501 3.74889 3.85593 3.92784 4.05252 4.13325 4.17166 4.18244 4.19031 4.21630 4.29743 4.37967 4.43937 4.50057 4.60265 4.75790 4.78867 4.86510 4.97873 5.01969 5.11969 5.14550 5.20432 5.28699 5.38924 5.41186 5.49968 5.55882 5.86048 6.25786 6.26757 6.36984 6.46876 6.94879 7.30553 7.32742 8.08809 8.30762 9.28974 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.001995 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.299387 B =14032.331385 C =15455.277886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.266 1.266 6 H -0.296 1.296 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.748 5.748 10 C 0.164 3.836 11 C -0.095 4.095 12 H 0.079 0.921 13 C -0.115 4.115 14 C 0.088 3.912 15 N -0.610 5.610 16 C 0.560 3.440 17 O -0.585 6.585 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.079 4.079 21 C -0.171 4.171 22 C 0.117 3.883 23 O -0.314 6.314 24 C 0.030 3.970 25 C 0.514 3.486 26 N -0.827 5.827 27 O -0.583 6.583 28 C -0.162 4.162 29 C 0.120 3.880 30 H 0.250 0.750 31 H 0.372 0.628 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.168 0.832 40 H 0.177 0.823 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.423 0.577 44 H 0.413 0.587 45 H 0.173 0.827 46 H 0.061 0.939 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -39.378 2.434 39.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.190 1.190 6 H -0.223 1.223 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.037 3.963 11 C -0.115 4.115 12 H 0.098 0.902 13 C -0.153 4.153 14 C -0.033 4.033 15 N -0.341 5.341 16 C 0.351 3.649 17 O -0.466 6.466 18 C -0.110 4.110 19 C -0.134 4.134 20 C -0.096 4.096 21 C -0.189 4.189 22 C 0.071 3.929 23 O -0.227 6.227 24 C -0.048 4.048 25 C 0.299 3.701 26 N -0.394 5.394 27 O -0.462 6.462 28 C -0.180 4.180 29 C -0.002 4.002 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.185 0.815 40 H 0.194 0.806 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.256 0.744 44 H 0.245 0.755 45 H 0.189 0.811 46 H 0.079 0.921 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.245 -38.399 2.479 38.712 hybrid contribution -0.410 1.199 0.190 1.281 sum -4.654 -37.199 2.669 37.584 Atomic orbital electron populations 1.69846 1.06792 1.26030 1.59631 1.25640 0.96397 1.01379 1.03808 0.85093 0.77760 0.79274 0.77349 1.21592 1.19032 1.22281 1.19677 0.91648 0.85275 1.40980 0.90204 1.42625 1.05615 1.01397 1.89460 1.20766 0.93269 0.83665 0.98582 1.22414 0.97260 0.95940 0.95891 0.90241 1.22763 0.97620 0.91431 1.03474 1.22826 0.90921 0.93836 0.95682 1.48525 1.27639 1.08950 1.49009 1.18558 0.79033 0.88750 0.78568 1.90762 1.54324 1.58294 1.43256 1.19488 0.97816 0.90788 1.02883 1.21340 0.95336 0.97749 0.98944 1.21266 1.00366 0.90811 0.97178 1.21884 0.93741 1.02745 1.00579 1.18869 0.90884 0.88859 0.94251 1.86130 1.46604 1.17188 1.72760 1.22846 0.98159 0.79612 1.04135 1.20494 0.86299 0.84056 0.79285 1.43505 1.28993 1.06769 1.60108 1.90817 1.31698 1.73927 1.49801 1.22002 1.03168 0.90836 1.01958 1.22112 0.98141 0.81700 0.98290 0.94113 0.79681 0.94543 0.95543 0.86949 0.88888 0.88352 0.88660 0.85813 0.81479 0.80557 0.85270 0.85301 0.74447 0.75456 0.81073 0.92105 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.23 13.06 21.65 0.28 -61.94 16 2 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 3 Si 0.98 47.66 29.55 68.60 2.03 49.69 16 4 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 7 C -0.24 -14.01 9.99 84.03 0.84 -13.17 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -39.29 5.45 -343.46 -1.87 -41.16 16 10 C 0.16 6.48 5.71 86.38 0.49 6.97 16 11 C -0.10 -3.09 3.10 -9.40 -0.03 -3.12 16 12 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 13 C -0.11 -2.54 6.42 31.78 0.20 -2.34 16 14 C 0.09 1.96 4.88 86.73 0.42 2.39 16 15 N -0.61 -19.26 3.33 -826.95 -2.75 -22.01 16 16 C 0.56 19.37 7.81 86.79 0.68 20.05 16 17 O -0.58 -25.40 16.67 -3.88 -0.06 -25.46 16 18 C -0.11 -2.80 5.87 -20.10 -0.12 -2.92 16 19 C -0.11 -2.53 9.59 22.53 0.22 -2.32 16 20 C -0.08 -1.01 10.03 22.22 0.22 -0.79 16 21 C -0.17 -1.73 9.03 22.42 0.20 -1.52 16 22 C 0.12 1.90 6.68 22.47 0.15 2.05 16 23 O -0.31 -5.09 9.67 -73.45 -0.71 -5.80 16 24 C 0.03 0.17 5.22 71.24 0.37 0.54 16 25 C 0.51 5.55 8.18 87.66 0.72 6.27 16 26 N -0.83 -0.69 8.87 -173.53 -1.54 -2.23 16 27 O -0.58 -13.96 17.34 16.00 0.28 -13.69 16 28 C -0.16 -3.44 8.54 22.63 0.19 -3.25 16 29 C 0.12 4.45 6.06 86.86 0.53 4.97 16 30 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.37 21.15 7.53 -92.71 -0.70 20.45 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.03 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.09 1.89 8.04 -2.38 -0.02 1.87 16 36 H 0.10 1.84 6.82 -2.39 -0.02 1.83 16 37 H 0.10 1.86 6.64 -2.39 -0.02 1.85 16 38 H 0.12 3.02 7.67 -2.91 -0.02 3.00 16 39 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 40 H 0.18 0.06 6.28 -2.91 -0.02 0.05 16 41 H 0.13 -0.16 7.66 -2.39 -0.02 -0.18 16 42 H 0.13 -0.14 7.66 -2.38 -0.02 -0.16 16 43 H 0.42 -3.13 8.83 -92.71 -0.82 -3.95 16 44 H 0.41 0.27 8.93 -92.71 -0.83 -0.56 16 45 H 0.17 3.43 2.77 -7.44 -0.02 3.41 16 46 H 0.06 2.36 8.00 -2.39 -0.02 2.35 16 47 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 Total: -1.00 -92.44 389.49 -0.10 -92.54 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -1.31 Total: 20.57 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.56 Total: 9.50 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -5.88 Total: -127.35 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.50 Total: -44.95 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -92.44 -0.10 -92.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731660898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.055 kcal (2) G-P(sol) polarization free energy of solvation -92.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds