Wall clock time and date at job start Wed Apr 1 2020 04:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00437 * 2 1 4 4 H 1.48497 * 109.47417 * 270.00108 * 3 2 1 5 5 H 1.48509 * 109.46914 * 29.99907 * 3 2 1 6 6 H 1.48494 * 109.47303 * 149.99784 * 3 2 1 7 7 C 1.38821 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99765 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00057 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.49539 * 59.99948 * 10 9 7 12 12 O 1.42894 * 109.47101 * 305.06157 * 11 10 9 13 13 C 1.53037 * 109.49770 * 180.02562 * 10 9 7 14 14 C 1.53034 * 109.54025 * 58.62092 * 13 10 9 15 15 C 1.53192 * 109.31470 * 61.36278 * 14 13 10 16 16 N 1.46931 * 108.77535 * 305.36705 * 15 14 13 17 17 C 1.34772 * 120.63265 * 233.60390 * 16 15 14 18 18 O 1.21365 * 119.99916 * 171.27411 * 17 16 15 19 19 C 1.49350 * 120.00213 * 351.28502 * 17 16 15 20 20 O 1.21379 * 119.99936 * 353.42507 * 19 17 16 21 21 N 1.34775 * 120.00521 * 173.42810 * 19 17 16 22 22 C 1.39722 * 120.00382 * 183.62076 * 21 19 17 23 23 C 1.38925 * 120.07294 * 324.21625 * 22 21 19 24 24 C 1.38104 * 119.91782 * 179.74995 * 23 22 21 25 25 C 1.38293 * 120.07800 * 0.54581 * 24 23 22 26 26 C 1.38289 * 120.15142 * 359.70430 * 25 24 23 27 27 C 1.38097 * 120.07827 * 0.02562 * 26 25 24 28 28 C 1.46930 * 118.73720 * 53.60673 * 16 15 14 29 29 H 0.96999 * 119.99469 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99565 * 359.97438 * 9 7 2 31 31 H 1.09008 * 109.46617 * 185.06607 * 11 10 9 32 32 H 1.09004 * 109.47342 * 65.06776 * 11 10 9 33 33 H 0.96703 * 114.00411 * 179.97438 * 12 11 10 34 34 H 1.09009 * 109.45927 * 178.63979 * 13 10 9 35 35 H 1.09005 * 109.46420 * 298.59825 * 13 10 9 36 36 H 1.08998 * 109.50276 * 181.31636 * 14 13 10 37 37 H 1.09002 * 109.49789 * 301.41503 * 14 13 10 38 38 H 1.09001 * 109.58994 * 65.15200 * 15 14 13 39 39 H 1.08999 * 109.58976 * 185.58335 * 15 14 13 40 40 H 0.97011 * 119.99427 * 3.61714 * 21 19 17 41 41 H 1.07991 * 120.04189 * 0.02562 * 23 22 21 42 42 H 1.08006 * 119.95597 * 180.29472 * 24 23 22 43 43 H 1.07997 * 119.92036 * 179.72464 * 25 24 23 44 44 H 1.08000 * 119.96312 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.04138 * 180.02562 * 27 26 25 46 46 H 1.08996 * 109.58794 * 186.60522 * 28 16 15 47 47 H 1.09000 * 109.58825 * 66.17555 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 2.9368 -3.7391 1.2481 12 8 3.7848 -2.5907 1.3104 13 6 1.0639 -4.8205 -0.0035 14 6 0.1619 -4.7211 -1.2358 15 6 1.0203 -4.8163 -2.5011 16 7 2.0710 -3.7912 -2.4380 17 6 2.2365 -2.9145 -3.4481 18 8 2.9967 -1.9772 -3.3197 19 6 1.4841 -3.0961 -4.7254 20 8 0.8166 -4.0947 -4.8999 21 7 1.5464 -2.1513 -5.6845 22 6 0.7834 -2.2848 -6.8474 23 6 0.5726 -3.5413 -7.4013 24 6 -0.1863 -3.6701 -8.5479 25 6 -0.7267 -2.5491 -9.1510 26 6 -0.5145 -1.2963 -8.6052 27 6 0.2387 -1.1607 -7.4557 28 6 2.9379 -3.7400 -1.2528 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0016 31 1 3.5483 -4.6404 1.2035 32 1 2.3046 -3.7726 2.1354 33 1 4.3709 -2.5757 2.0795 34 1 1.6093 -5.7640 -0.0279 35 1 0.4529 -4.7777 0.8981 36 1 -0.5610 -5.5368 -1.2243 37 1 -0.3652 -3.7670 -1.2248 38 1 1.4769 -5.8044 -2.5594 39 1 0.3970 -4.6471 -3.3791 40 1 2.1209 -1.3784 -5.5674 41 1 0.9979 -4.4167 -6.9333 42 1 -0.3546 -4.6472 -8.9763 43 1 -1.3161 -2.6523 -10.0500 44 1 -0.9376 -0.4228 -9.0789 45 1 0.4038 -0.1820 -7.0297 46 1 3.5797 -2.8608 -1.3072 47 1 3.5507 -4.6404 -1.2092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733818101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:09 Heat of formation + Delta-G solvation = -41.166473 kcal Electronic energy + Delta-G solvation = -32016.319751 eV Core-core repulsion = 27779.854764 eV Total energy + Delta-G solvation = -4236.464987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.04052 -39.59648 -38.39141 -37.52705 -35.91175 -34.90698 -33.65359 -32.21889 -31.05628 -30.99945 -29.80350 -28.62022 -26.41299 -25.30099 -23.91139 -23.46056 -22.88042 -21.79106 -21.48397 -19.97440 -18.59800 -17.89510 -17.35001 -17.13400 -16.60143 -16.18227 -15.92945 -15.81189 -15.35689 -15.04977 -14.62860 -14.18277 -14.12863 -13.89569 -13.81606 -13.54424 -13.35548 -13.30439 -13.17788 -12.85859 -12.77948 -12.24438 -12.02320 -11.90851 -11.64175 -11.46140 -11.24996 -10.96659 -10.73171 -10.68478 -10.58457 -10.49568 -10.22366 -10.16604 -9.71342 -9.49088 -9.08659 -8.98175 -8.89474 -8.75142 -8.28551 -8.12626 -6.80700 -5.55392 -2.81021 1.04238 1.30977 1.80604 2.51038 3.47108 3.58525 3.63530 3.66263 3.70613 3.78985 4.50041 4.76199 4.81968 4.83701 4.85608 5.05550 5.27240 5.30360 5.31280 5.42626 5.45866 5.47594 5.51376 5.59198 5.85923 5.87440 5.89013 5.90314 6.01722 6.07368 6.08361 6.20208 6.21683 6.25487 6.31633 6.37847 6.42763 6.49603 6.58112 6.76476 6.83258 6.88512 6.98402 7.12898 7.67993 7.88457 8.17596 8.36551 8.38954 8.62275 9.75675 10.23122 10.58971 11.68219 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.003794 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.353713 B = 7377.553064 C = 8819.467863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.024 4.024 3 Si 0.903 3.097 4 H -0.294 1.294 5 H -0.298 1.298 6 H -0.283 1.283 7 C -0.194 4.194 8 H 0.092 0.908 9 N -0.702 5.702 10 C 0.189 3.811 11 C 0.075 3.925 12 O -0.536 6.536 13 C -0.117 4.117 14 C -0.132 4.132 15 C 0.074 3.926 16 N -0.558 5.558 17 C 0.509 3.491 18 O -0.504 6.504 19 C 0.516 3.484 20 O -0.501 6.501 21 N -0.647 5.647 22 C 0.146 3.854 23 C -0.120 4.120 24 C -0.104 4.104 25 C -0.137 4.137 26 C -0.102 4.102 27 C -0.140 4.140 28 C 0.106 3.894 29 H 0.248 0.752 30 H 0.382 0.618 31 H 0.024 0.976 32 H 0.039 0.961 33 H 0.351 0.649 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.131 0.869 40 H 0.424 0.576 41 H 0.138 0.862 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.105 0.895 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 -11.513 -11.950 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.218 4.218 3 Si 0.735 3.265 4 H -0.222 1.222 5 H -0.225 1.225 6 H -0.209 1.209 7 C -0.325 4.325 8 H 0.110 0.890 9 N -0.343 5.343 10 C 0.095 3.905 11 C -0.006 4.006 12 O -0.338 6.338 13 C -0.155 4.155 14 C -0.170 4.170 15 C -0.048 4.048 16 N -0.290 5.290 17 C 0.290 3.710 18 O -0.379 6.379 19 C 0.300 3.700 20 O -0.376 6.376 21 N -0.293 5.293 22 C 0.052 3.948 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.155 4.155 26 C -0.121 4.121 27 C -0.160 4.160 28 C -0.018 4.018 29 H 0.058 0.942 30 H 0.217 0.783 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.196 0.804 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.148 0.852 40 H 0.262 0.738 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.123 0.877 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.247 -11.416 -12.471 16.953 hybrid contribution 0.561 1.207 0.834 1.570 sum 1.808 -10.209 -11.637 15.586 Atomic orbital electron populations 1.69666 1.05010 1.24964 1.60125 1.24663 0.95325 0.97416 1.04364 0.86216 0.78657 0.84338 0.77239 1.22237 1.22540 1.20891 1.19511 0.91857 0.82958 1.38184 0.89032 1.42443 1.05263 0.99249 1.87301 1.19932 0.90945 0.88318 0.91270 1.22744 0.92102 0.86745 0.99012 1.86966 1.54822 1.43721 1.48321 1.21661 0.97811 0.97390 0.98649 1.21880 0.97892 1.03082 0.94131 1.22709 0.90192 0.90306 1.01564 1.47551 1.33235 1.30979 1.17198 1.19422 0.83923 0.83354 0.84283 1.90797 1.37843 1.28295 1.80999 1.20731 0.81179 0.82905 0.85149 1.90473 1.40427 1.28018 1.78732 1.43243 1.43999 1.25919 1.16151 1.17805 0.95329 0.94683 0.87029 1.21285 1.00246 0.96867 0.95604 1.21047 0.97239 0.98777 0.95200 1.21148 1.01181 0.92662 1.00549 1.20945 0.98019 0.97693 0.95428 1.21030 0.99304 0.97943 0.97716 1.22322 0.92848 1.02138 0.84513 0.94187 0.78322 0.95808 0.94270 0.80393 0.91987 0.91524 0.91325 0.90306 0.92105 0.85234 0.73750 0.84393 0.85735 0.86052 0.85627 0.85335 0.87701 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.22 13.06 55.49 0.72 -28.50 16 2 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 3 Si 0.90 23.97 29.55 -169.99 -5.02 18.95 16 4 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 5 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.19 -5.37 8.06 -15.06 -0.12 -5.50 16 8 H 0.09 2.60 5.27 -52.49 -0.28 2.32 16 9 N -0.70 -17.00 4.75 -47.12 -0.22 -17.22 16 10 C 0.19 3.56 0.68 -131.70 -0.09 3.47 16 11 C 0.08 1.29 6.09 37.16 0.23 1.51 16 12 O -0.54 -10.19 10.05 -35.23 -0.35 -10.54 16 13 C -0.12 -1.79 4.76 -26.69 -0.13 -1.92 16 14 C -0.13 -2.03 5.91 -26.61 -0.16 -2.19 16 15 C 0.07 1.15 5.98 -3.71 -0.02 1.13 16 16 N -0.56 -10.15 2.89 -173.31 -0.50 -10.65 16 17 C 0.51 9.89 7.73 -11.63 -0.09 9.81 16 18 O -0.50 -11.23 15.92 5.48 0.09 -11.14 16 19 C 0.52 8.69 7.57 -11.63 -0.09 8.60 16 20 O -0.50 -8.33 10.69 5.47 0.06 -8.27 16 21 N -0.65 -9.57 5.32 -10.30 -0.05 -9.62 16 22 C 0.15 1.98 6.28 -83.75 -0.53 1.45 16 23 C -0.12 -1.54 8.68 -39.38 -0.34 -1.88 16 24 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 25 C -0.14 -1.33 10.04 -39.54 -0.40 -1.72 16 26 C -0.10 -1.04 10.04 -39.61 -0.40 -1.44 16 27 C -0.14 -1.67 9.97 -39.38 -0.39 -2.06 16 28 C 0.11 1.98 4.93 -3.71 -0.02 1.96 16 29 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.38 10.01 6.43 -40.82 -0.26 9.75 16 31 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.35 4.93 9.12 45.56 0.42 5.34 16 34 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.49 6.75 -51.93 -0.35 1.14 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.13 2.11 4.32 -54.80 -0.24 1.87 16 40 H 0.42 5.91 8.30 -40.82 -0.34 5.57 16 41 H 0.14 1.85 6.31 -52.49 -0.33 1.52 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 46 H 0.10 2.34 5.83 -51.93 -0.30 2.04 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -34.61 375.68 -8.13 -42.74 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -5.47 Total: 19.70 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -3.04 Total: 8.90 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -0.05 Total: -65.99 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.21 Total: -29.95 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.02 Total: 18.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.61 -8.13 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733818101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.571 kcal (2) G-P(sol) polarization free energy of solvation -34.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds