Wall clock time and date at job start Wed Apr 1 2020 04:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00437 * 2 1 4 4 H 1.48497 * 109.47417 * 270.00108 * 3 2 1 5 5 H 1.48509 * 109.46914 * 29.99907 * 3 2 1 6 6 H 1.48494 * 109.47303 * 149.99784 * 3 2 1 7 7 C 1.38821 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99765 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00057 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.49539 * 59.99948 * 10 9 7 12 12 O 1.42894 * 109.47101 * 305.06157 * 11 10 9 13 13 C 1.53037 * 109.49770 * 180.02562 * 10 9 7 14 14 C 1.53034 * 109.54025 * 58.62092 * 13 10 9 15 15 C 1.53192 * 109.31470 * 61.36278 * 14 13 10 16 16 N 1.46931 * 108.77535 * 305.36705 * 15 14 13 17 17 C 1.34772 * 120.63265 * 233.60390 * 16 15 14 18 18 O 1.21365 * 119.99916 * 171.27411 * 17 16 15 19 19 C 1.49350 * 120.00213 * 351.28502 * 17 16 15 20 20 O 1.21379 * 119.99936 * 353.42507 * 19 17 16 21 21 N 1.34775 * 120.00521 * 173.42810 * 19 17 16 22 22 C 1.39722 * 120.00382 * 183.62076 * 21 19 17 23 23 C 1.38925 * 120.07294 * 324.21625 * 22 21 19 24 24 C 1.38104 * 119.91782 * 179.74995 * 23 22 21 25 25 C 1.38293 * 120.07800 * 0.54581 * 24 23 22 26 26 C 1.38289 * 120.15142 * 359.70430 * 25 24 23 27 27 C 1.38097 * 120.07827 * 0.02562 * 26 25 24 28 28 C 1.46930 * 118.73720 * 53.60673 * 16 15 14 29 29 H 0.96999 * 119.99469 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99565 * 359.97438 * 9 7 2 31 31 H 1.09008 * 109.46617 * 185.06607 * 11 10 9 32 32 H 1.09004 * 109.47342 * 65.06776 * 11 10 9 33 33 H 0.96703 * 114.00411 * 179.97438 * 12 11 10 34 34 H 1.09009 * 109.45927 * 178.63979 * 13 10 9 35 35 H 1.09005 * 109.46420 * 298.59825 * 13 10 9 36 36 H 1.08998 * 109.50276 * 181.31636 * 14 13 10 37 37 H 1.09002 * 109.49789 * 301.41503 * 14 13 10 38 38 H 1.09001 * 109.58994 * 65.15200 * 15 14 13 39 39 H 1.08999 * 109.58976 * 185.58335 * 15 14 13 40 40 H 0.97011 * 119.99427 * 3.61714 * 21 19 17 41 41 H 1.07991 * 120.04189 * 0.02562 * 23 22 21 42 42 H 1.08006 * 119.95597 * 180.29472 * 24 23 22 43 43 H 1.07997 * 119.92036 * 179.72464 * 25 24 23 44 44 H 1.08000 * 119.96312 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.04138 * 180.02562 * 27 26 25 46 46 H 1.08996 * 109.58794 * 186.60522 * 28 16 15 47 47 H 1.09000 * 109.58825 * 66.17555 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6569 -0.0016 11 6 2.9368 -3.7391 1.2481 12 8 3.7848 -2.5907 1.3104 13 6 1.0639 -4.8205 -0.0035 14 6 0.1619 -4.7211 -1.2358 15 6 1.0203 -4.8163 -2.5011 16 7 2.0710 -3.7912 -2.4380 17 6 2.2365 -2.9145 -3.4481 18 8 2.9967 -1.9772 -3.3197 19 6 1.4841 -3.0961 -4.7254 20 8 0.8166 -4.0947 -4.8999 21 7 1.5464 -2.1513 -5.6845 22 6 0.7834 -2.2848 -6.8474 23 6 0.5726 -3.5413 -7.4013 24 6 -0.1863 -3.6701 -8.5479 25 6 -0.7267 -2.5491 -9.1510 26 6 -0.5145 -1.2963 -8.6052 27 6 0.2387 -1.1607 -7.4557 28 6 2.9379 -3.7400 -1.2528 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0016 31 1 3.5483 -4.6404 1.2035 32 1 2.3046 -3.7726 2.1354 33 1 4.3709 -2.5757 2.0795 34 1 1.6093 -5.7640 -0.0279 35 1 0.4529 -4.7777 0.8981 36 1 -0.5610 -5.5368 -1.2243 37 1 -0.3652 -3.7670 -1.2248 38 1 1.4769 -5.8044 -2.5594 39 1 0.3970 -4.6471 -3.3791 40 1 2.1209 -1.3784 -5.5674 41 1 0.9979 -4.4167 -6.9333 42 1 -0.3546 -4.6472 -8.9763 43 1 -1.3161 -2.6523 -10.0500 44 1 -0.9376 -0.4228 -9.0789 45 1 0.4038 -0.1820 -7.0297 46 1 3.5797 -2.8608 -1.3072 47 1 3.5507 -4.6404 -1.2092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733818101.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:08 Heat of formation + Delta-G solvation = -67.947990 kcal Electronic energy + Delta-G solvation = -32017.481085 eV Core-core repulsion = 27779.854764 eV Total energy + Delta-G solvation = -4237.626321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.32329 -40.84584 -39.57534 -38.96468 -37.29749 -36.10982 -35.38301 -33.89774 -32.60197 -31.87247 -30.81524 -30.45595 -27.81011 -26.61660 -25.59377 -25.06535 -23.79796 -23.03336 -22.65051 -21.25493 -20.07272 -19.35573 -18.88735 -18.45091 -17.80119 -17.75870 -17.26004 -17.00496 -16.73294 -16.43294 -15.99009 -15.76430 -15.59874 -15.18629 -15.04900 -14.89448 -14.71506 -14.60073 -14.46862 -14.25022 -13.82245 -13.67201 -13.53054 -13.25089 -13.03988 -12.88087 -12.70400 -12.51334 -12.36329 -12.22397 -12.04487 -11.91505 -11.73952 -11.44055 -11.34893 -11.32010 -10.88098 -10.54560 -10.22659 -9.87480 -9.66262 -9.24724 -8.81536 -7.78621 -5.00243 -0.04943 0.44219 0.61423 1.22402 1.42371 1.46027 1.52538 2.10039 2.44781 2.65972 2.85357 3.18296 3.41086 3.69163 3.89349 3.96501 4.00220 4.04290 4.06127 4.17244 4.29541 4.30337 4.41412 4.51750 4.54505 4.56228 4.61058 4.74356 4.79697 4.81001 4.92302 5.01638 5.04236 5.09657 5.11917 5.24266 5.29358 5.40920 5.47809 5.49616 5.57448 5.60357 5.91518 5.94831 6.04983 6.27931 6.45216 6.61621 6.92215 7.18977 7.54056 8.22268 8.44871 9.45999 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.003794 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.353713 B = 7377.553064 C = 8819.467863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.093 4.093 3 Si 0.948 3.052 4 H -0.305 1.305 5 H -0.302 1.302 6 H -0.274 1.274 7 C -0.160 4.160 8 H 0.086 0.914 9 N -0.712 5.712 10 C 0.175 3.825 11 C 0.076 3.924 12 O -0.570 6.570 13 C -0.110 4.110 14 C -0.127 4.127 15 C 0.073 3.927 16 N -0.558 5.558 17 C 0.496 3.504 18 O -0.547 6.547 19 C 0.517 3.483 20 O -0.502 6.502 21 N -0.641 5.641 22 C 0.115 3.885 23 C -0.135 4.135 24 C -0.105 4.105 25 C -0.129 4.129 26 C -0.102 4.102 27 C -0.151 4.151 28 C 0.109 3.891 29 H 0.238 0.762 30 H 0.369 0.631 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.374 0.626 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.424 0.576 41 H 0.127 0.873 42 H 0.150 0.850 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.131 0.869 46 H 0.063 0.937 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 -14.211 -13.021 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.282 4.282 3 Si 0.782 3.218 4 H -0.234 1.234 5 H -0.229 1.229 6 H -0.199 1.199 7 C -0.293 4.293 8 H 0.103 0.897 9 N -0.350 5.350 10 C 0.083 3.917 11 C -0.004 4.004 12 O -0.376 6.376 13 C -0.148 4.148 14 C -0.165 4.165 15 C -0.047 4.047 16 N -0.289 5.289 17 C 0.278 3.722 18 O -0.426 6.426 19 C 0.300 3.700 20 O -0.378 6.378 21 N -0.287 5.287 22 C 0.022 3.978 23 C -0.155 4.155 24 C -0.124 4.124 25 C -0.147 4.147 26 C -0.121 4.121 27 C -0.171 4.171 28 C -0.015 4.015 29 H 0.047 0.953 30 H 0.202 0.798 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.222 0.778 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.262 0.738 41 H 0.145 0.855 42 H 0.168 0.832 43 H 0.173 0.827 44 H 0.171 0.829 45 H 0.149 0.851 46 H 0.082 0.918 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.221 -14.179 -13.535 19.640 hybrid contribution 0.627 1.900 1.086 2.277 sum 1.848 -12.279 -12.448 17.583 Atomic orbital electron populations 1.69792 1.05963 1.24485 1.63419 1.25222 0.96021 0.99932 1.07054 0.85448 0.78026 0.81913 0.76460 1.23417 1.22904 1.19934 1.19653 0.91599 0.84204 1.33817 0.89671 1.42589 1.04823 1.00469 1.87159 1.20428 0.91921 0.87253 0.92048 1.22690 0.92351 0.87828 0.97541 1.86853 1.55672 1.45106 1.49947 1.21666 0.97206 0.97394 0.98507 1.21846 0.98322 1.02116 0.94238 1.22882 0.89608 0.90914 1.01312 1.47775 1.33450 1.31017 1.16651 1.19982 0.83702 0.82998 0.85508 1.90762 1.39765 1.30001 1.82029 1.20266 0.81363 0.83586 0.84777 1.90462 1.40591 1.28062 1.78691 1.43198 1.43885 1.25290 1.16279 1.18074 0.96739 0.95846 0.87111 1.21334 1.01259 0.96117 0.96784 1.21380 0.96235 1.00497 0.94252 1.21577 1.00172 0.91919 1.01061 1.21329 0.97018 0.99191 0.94543 1.21230 0.99741 0.97623 0.98533 1.22237 0.92721 1.02057 0.84497 0.95279 0.79809 0.91369 0.94383 0.77846 0.87798 0.91336 0.87827 0.94630 0.88620 0.86085 0.73771 0.85510 0.83249 0.82738 0.82937 0.85073 0.91843 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.99 13.06 21.65 0.28 -62.70 16 2 C -0.09 -5.67 5.50 84.86 0.47 -5.20 16 3 Si 0.95 51.02 29.55 68.60 2.03 53.05 16 4 H -0.31 -16.73 7.11 99.48 0.71 -16.03 16 5 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 6 H -0.27 -14.08 7.11 99.48 0.71 -13.38 16 7 C -0.16 -9.07 8.06 84.04 0.68 -8.39 16 8 H 0.09 4.94 5.27 -2.91 -0.02 4.92 16 9 N -0.71 -34.86 4.75 -303.00 -1.44 -36.29 16 10 C 0.17 6.29 0.68 3.68 0.00 6.30 16 11 C 0.08 2.40 6.09 71.98 0.44 2.84 16 12 O -0.57 -20.96 10.05 -148.98 -1.50 -22.46 16 13 C -0.11 -3.01 4.76 30.62 0.15 -2.87 16 14 C -0.13 -3.66 5.91 30.67 0.18 -3.48 16 15 C 0.07 2.13 5.98 86.36 0.52 2.65 16 16 N -0.56 -20.06 2.89 -820.58 -2.37 -22.43 16 17 C 0.50 19.90 7.73 87.24 0.67 20.58 16 18 O -0.55 -25.67 15.92 -3.29 -0.05 -25.72 16 19 C 0.52 17.97 7.57 87.24 0.66 18.63 16 20 O -0.50 -16.80 10.69 -3.34 -0.04 -16.84 16 21 N -0.64 -19.88 5.32 -304.84 -1.62 -21.50 16 22 C 0.12 3.17 6.28 38.21 0.24 3.41 16 23 C -0.13 -3.42 8.68 22.40 0.19 -3.22 16 24 C -0.11 -2.01 10.04 22.25 0.22 -1.78 16 25 C -0.13 -2.11 10.04 22.29 0.22 -1.89 16 26 C -0.10 -1.86 10.04 22.25 0.22 -1.64 16 27 C -0.15 -3.56 9.97 22.40 0.22 -3.34 16 28 C 0.11 3.93 4.93 86.36 0.43 4.36 16 29 H 0.24 15.18 8.31 -92.71 -0.77 14.40 16 30 H 0.37 19.89 6.43 -92.71 -0.60 19.29 16 31 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.37 9.87 9.12 -74.05 -0.68 9.19 16 34 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.03 1.34 6.75 -2.39 -0.02 1.33 16 38 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.12 3.83 4.32 -47.79 -0.21 3.62 16 40 H 0.42 12.73 8.30 -92.70 -0.77 11.97 16 41 H 0.13 3.42 6.31 -2.92 -0.02 3.41 16 42 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 43 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 46 H 0.06 2.86 5.83 -2.39 -0.01 2.85 16 47 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -79.62 375.68 -0.38 -80.00 By element: Atomic # 1 Polarization: 49.14 SS G_CDS: -1.19 Total: 47.95 kcal Atomic # 6 Polarization: 21.43 SS G_CDS: 5.52 Total: 26.95 kcal Atomic # 7 Polarization: -137.78 SS G_CDS: -5.15 Total: -142.93 kcal Atomic # 8 Polarization: -63.43 SS G_CDS: -1.59 Total: -65.02 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.03 Total: 53.05 kcal Total: -79.62 -0.38 -80.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733818101.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.057 kcal (2) G-P(sol) polarization free energy of solvation -79.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds