Wall clock time and date at job start Wed Apr 1 2020 04:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48502 * 109.46903 * 270.00056 * 3 2 1 5 5 H 1.48499 * 109.47237 * 29.99922 * 3 2 1 6 6 H 1.48505 * 109.47153 * 150.00093 * 3 2 1 7 7 C 1.38952 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00450 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99845 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00302 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99779 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47250 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00327 * 176.26556 * 13 12 10 15 15 H 1.08998 * 109.46831 * 325.38225 * 14 13 12 16 16 C 1.53004 * 109.47151 * 205.38592 * 14 13 12 17 17 N 1.46492 * 109.47092 * 54.99920 * 16 14 13 18 18 C 1.34777 * 119.99997 * 180.02562 * 17 16 14 19 19 O 1.21782 * 119.99817 * 359.97438 * 18 17 16 20 20 C 1.41557 * 120.00211 * 180.27597 * 18 17 16 21 21 C 1.35622 * 119.99753 * 185.54267 * 20 18 17 22 22 C 1.41605 * 120.00211 * 9.17418 * 21 20 18 23 23 C 1.37953 * 126.10187 * 219.43105 * 22 21 20 24 24 C 1.40319 * 106.53072 * 179.85059 * 23 22 21 25 25 C 1.35153 * 107.19883 * 0.41052 * 24 23 22 26 26 O 1.34015 * 109.04042 * 359.74164 * 25 24 23 27 27 C 1.52995 * 109.47199 * 85.38012 * 14 13 12 28 28 C 1.52996 * 117.50217 * 253.09790 * 27 14 13 29 29 C 1.52995 * 117.49990 * 184.43220 * 27 14 13 30 30 H 0.97004 * 119.99839 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99755 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47279 * 59.99986 * 12 10 9 33 33 H 1.09005 * 109.47226 * 300.00328 * 12 10 9 34 34 H 1.00897 * 111.00419 * 300.21761 * 13 12 10 35 35 H 1.08998 * 109.46714 * 294.99826 * 16 14 13 36 36 H 1.08996 * 109.46798 * 175.00071 * 16 14 13 37 37 H 0.96998 * 120.00839 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.99621 * 5.54193 * 20 18 17 39 39 H 1.08006 * 119.99983 * 189.16799 * 21 20 18 40 40 H 1.08006 * 126.73677 * 359.96994 * 23 22 21 41 41 H 1.07996 * 126.40144 * 180.15403 * 24 23 22 42 42 H 1.08010 * 125.48032 * 179.72316 * 25 24 23 43 43 H 1.09002 * 115.54830 * 38.77099 * 27 14 13 44 44 H 1.09001 * 117.49685 * 359.97438 * 28 27 14 45 45 H 1.08997 * 117.50026 * 145.02127 * 28 27 14 46 46 H 1.09000 * 117.50190 * 214.98240 * 29 27 14 47 47 H 1.09000 * 117.50032 * 0.02562 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 1.5001 -7.2690 0.0895 15 1 0.6129 -7.1596 0.7132 16 6 2.4328 -8.3124 0.7079 17 7 2.9242 -7.8241 1.9987 18 6 3.7669 -8.5811 2.7290 19 8 4.1194 -9.6712 2.3160 20 6 4.2372 -8.1118 3.9790 21 6 5.1707 -8.8202 4.6616 22 6 5.8166 -9.9191 4.0446 23 6 6.1396 -11.1162 4.6493 24 6 6.7597 -11.9046 3.6681 25 6 6.7985 -11.1724 2.5328 26 8 6.2312 -9.9800 2.7620 27 6 1.0856 -7.7221 -1.3118 28 6 -0.3988 -7.6353 -1.6722 29 6 0.2504 -8.9991 -1.4232 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 -0.0002 32 1 0.6174 -4.9205 -0.8902 33 1 0.6166 -4.9209 0.8897 34 1 2.7942 -5.9463 -0.8128 35 1 3.2765 -8.4866 0.0402 36 1 1.8878 -9.2447 0.8557 37 1 2.6438 -6.9557 2.3275 38 1 3.8525 -7.1897 4.3890 39 1 5.4217 -8.5462 5.6757 40 1 5.9505 -11.3931 5.6760 41 1 7.1391 -12.9075 3.7971 42 1 7.2193 -11.4960 1.5921 43 1 1.8081 -7.5227 -2.1033 44 1 -1.0802 -7.2558 -0.9107 45 1 -0.6529 -7.3792 -2.7007 46 1 0.4230 -9.6396 -2.2880 47 1 -0.0042 -9.5162 -0.4981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752445451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:14 Heat of formation + Delta-G solvation = -1.769074 kcal Electronic energy + Delta-G solvation = -29631.879875 eV Core-core repulsion = 25397.123288 eV Total energy + Delta-G solvation = -4234.756587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39820 -39.83303 -38.77352 -37.84683 -35.22093 -34.24606 -33.96506 -33.49046 -32.82749 -31.24813 -29.84955 -28.50514 -26.24547 -24.63624 -23.64636 -22.78934 -22.31714 -21.65731 -20.95409 -20.67551 -19.47409 -19.17210 -17.98498 -17.84756 -16.70104 -16.36037 -16.00914 -15.86878 -15.48634 -15.39425 -14.99148 -14.59331 -14.31154 -14.24857 -14.12483 -13.94352 -13.57709 -13.33450 -13.10424 -12.85668 -12.56499 -12.44607 -12.44260 -12.23075 -11.95795 -11.72516 -11.52852 -11.51728 -11.34155 -11.06220 -10.63944 -10.41303 -10.25763 -10.20439 -10.15889 -9.92697 -9.73706 -9.52970 -8.85621 -8.53307 -8.10799 -8.00020 -7.98284 -6.44012 -3.84770 0.51715 2.10914 2.64630 3.16044 3.18494 3.24967 3.30692 3.34883 3.50818 3.67434 3.88706 4.02268 4.25962 4.54610 4.67551 4.73247 4.84442 4.88644 4.97672 5.03061 5.06914 5.11031 5.19990 5.25428 5.28373 5.37721 5.48597 5.62972 5.67112 5.71035 5.74241 5.78409 5.85842 5.92149 5.93722 5.96175 5.97520 6.04000 6.21578 6.24553 6.49108 6.59399 7.11705 7.19982 7.53061 7.55461 7.70911 8.04036 8.38811 8.58986 9.15931 9.52151 10.03630 10.73646 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.002306 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.907908 B =12139.207998 C =14145.754806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.657 5.657 14 C 0.104 3.896 15 H 0.083 0.917 16 C 0.140 3.860 17 N -0.707 5.707 18 C 0.535 3.465 19 O -0.538 6.538 20 C -0.195 4.195 21 C -0.006 4.006 22 C 0.015 3.985 23 C -0.188 4.188 24 C -0.228 4.228 25 C -0.019 4.019 26 O -0.130 6.130 27 C -0.182 4.182 28 C -0.175 4.175 29 C -0.174 4.174 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.353 0.647 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.409 0.591 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.196 0.804 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 -21.074 5.474 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.288 5.288 14 C -0.007 4.007 15 H 0.101 0.899 16 C 0.016 3.984 17 N -0.358 5.358 18 C 0.325 3.675 19 O -0.418 6.418 20 C -0.216 4.216 21 C -0.026 4.026 22 C -0.035 4.035 23 C -0.208 4.208 24 C -0.247 4.247 25 C -0.090 4.090 26 O -0.023 6.023 27 C -0.203 4.203 28 C -0.212 4.212 29 C -0.212 4.212 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.245 0.755 38 H 0.157 0.843 39 H 0.172 0.828 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.213 0.787 43 H 0.125 0.875 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.746 -21.349 5.633 22.395 hybrid contribution -0.869 1.102 -0.806 1.618 sum 2.877 -20.247 4.827 21.012 Atomic orbital electron populations 1.69607 1.05927 1.28149 1.50636 1.25257 0.95634 0.99721 0.97349 0.85867 0.79265 0.80837 0.78385 1.20441 1.20925 1.19398 1.19691 0.93344 0.82230 1.47561 0.87954 1.41868 1.09173 1.04620 1.64434 1.19814 0.88399 0.84684 0.84534 1.90536 1.13718 1.87057 1.55247 1.21710 0.94280 0.90922 1.01296 1.60203 1.20444 0.99464 1.48728 1.21466 0.96231 0.89777 0.93195 0.89872 1.21165 0.97379 0.95423 0.84473 1.45744 1.47805 1.21773 1.20447 1.17117 0.79663 0.85376 0.85357 1.90848 1.57770 1.21352 1.71837 1.22357 1.00735 1.01553 0.96924 1.20606 0.92751 0.90588 0.98695 1.19588 1.04220 0.97385 0.82344 1.22111 1.04019 0.93957 1.00666 1.21588 1.07599 1.01760 0.93748 1.24121 1.00498 0.84104 1.00249 1.84302 1.56810 1.33828 1.27333 1.23129 0.94920 1.02980 0.99237 1.23014 0.94857 1.00529 1.02753 1.22903 1.04305 0.90685 1.03292 0.91884 0.77512 0.93480 0.89809 0.82696 0.91572 0.91527 0.75497 0.84288 0.82832 0.83591 0.83814 0.78729 0.87460 0.88632 0.88753 0.88839 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 16 10 C 0.44 9.93 7.83 -10.99 -0.09 9.85 16 11 O -0.58 -15.29 15.86 5.55 0.09 -15.20 16 12 C 0.05 0.82 5.98 -4.98 -0.03 0.79 16 13 N -0.66 -9.52 5.25 -107.99 -0.57 -10.09 16 14 C 0.10 1.17 2.33 -67.71 -0.16 1.02 16 15 H 0.08 0.90 7.53 -51.93 -0.39 0.51 16 16 C 0.14 1.69 5.20 -4.04 -0.02 1.66 16 17 N -0.71 -8.91 5.38 -63.25 -0.34 -9.25 16 18 C 0.54 7.41 7.37 -14.99 -0.11 7.30 16 19 O -0.54 -8.91 12.39 -19.75 -0.24 -9.15 16 20 C -0.20 -2.16 9.85 -39.25 -0.39 -2.55 16 21 C -0.01 -0.07 9.95 -39.23 -0.39 -0.46 16 22 C 0.02 0.19 5.33 -38.40 -0.20 -0.01 16 23 C -0.19 -2.08 10.90 -38.90 -0.42 -2.51 16 24 C -0.23 -2.42 10.87 -39.90 -0.43 -2.86 16 25 C -0.02 -0.22 12.06 29.63 0.36 0.14 16 26 O -0.13 -1.87 7.79 -20.17 -0.16 -2.03 16 27 C -0.18 -1.86 5.06 -90.63 -0.46 -2.32 16 28 C -0.17 -1.65 10.18 -26.69 -0.27 -1.93 16 29 C -0.17 -1.54 9.88 -26.69 -0.26 -1.80 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 32 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.08 1.22 7.96 -51.93 -0.41 0.81 16 34 H 0.35 5.53 8.20 -39.29 -0.32 5.21 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.78 7.77 -51.93 -0.40 0.37 16 37 H 0.41 4.96 8.10 -40.82 -0.33 4.63 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.20 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.11 1.15 7.98 -51.93 -0.41 0.73 16 44 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.80 7.95 -51.93 -0.41 0.39 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -33.91 403.58 -9.36 -43.27 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -6.74 Total: 19.45 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.12 Total: -1.52 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.24 Total: -56.70 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.31 Total: -26.39 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.91 -9.36 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752445451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.503 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds