Wall clock time and date at job start Wed Apr 1 2020 04:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48502 * 109.46903 * 270.00056 * 3 2 1 5 5 H 1.48499 * 109.47237 * 29.99922 * 3 2 1 6 6 H 1.48505 * 109.47153 * 150.00093 * 3 2 1 7 7 C 1.38952 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00450 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99882 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99845 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00302 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99779 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47250 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00327 * 176.26556 * 13 12 10 15 15 H 1.08998 * 109.46831 * 325.38225 * 14 13 12 16 16 C 1.53004 * 109.47151 * 205.38592 * 14 13 12 17 17 N 1.46492 * 109.47092 * 54.99920 * 16 14 13 18 18 C 1.34777 * 119.99997 * 180.02562 * 17 16 14 19 19 O 1.21782 * 119.99817 * 359.97438 * 18 17 16 20 20 C 1.41557 * 120.00211 * 180.27597 * 18 17 16 21 21 C 1.35622 * 119.99753 * 185.54267 * 20 18 17 22 22 C 1.41605 * 120.00211 * 9.17418 * 21 20 18 23 23 C 1.37953 * 126.10187 * 219.43105 * 22 21 20 24 24 C 1.40319 * 106.53072 * 179.85059 * 23 22 21 25 25 C 1.35153 * 107.19883 * 0.41052 * 24 23 22 26 26 O 1.34015 * 109.04042 * 359.74164 * 25 24 23 27 27 C 1.52995 * 109.47199 * 85.38012 * 14 13 12 28 28 C 1.52996 * 117.50217 * 253.09790 * 27 14 13 29 29 C 1.52995 * 117.49990 * 184.43220 * 27 14 13 30 30 H 0.97004 * 119.99839 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99755 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47279 * 59.99986 * 12 10 9 33 33 H 1.09005 * 109.47226 * 300.00328 * 12 10 9 34 34 H 1.00897 * 111.00419 * 300.21761 * 13 12 10 35 35 H 1.08998 * 109.46714 * 294.99826 * 16 14 13 36 36 H 1.08996 * 109.46798 * 175.00071 * 16 14 13 37 37 H 0.96998 * 120.00839 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.99621 * 5.54193 * 20 18 17 39 39 H 1.08006 * 119.99983 * 189.16799 * 21 20 18 40 40 H 1.08006 * 126.73677 * 359.96994 * 23 22 21 41 41 H 1.07996 * 126.40144 * 180.15403 * 24 23 22 42 42 H 1.08010 * 125.48032 * 179.72316 * 25 24 23 43 43 H 1.09002 * 115.54830 * 38.77099 * 27 14 13 44 44 H 1.09001 * 117.49685 * 359.97438 * 28 27 14 45 45 H 1.08997 * 117.50026 * 145.02127 * 28 27 14 46 46 H 1.09000 * 117.50190 * 214.98240 * 29 27 14 47 47 H 1.09000 * 117.50032 * 0.02562 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 1.5001 -7.2690 0.0895 15 1 0.6129 -7.1596 0.7132 16 6 2.4328 -8.3124 0.7079 17 7 2.9242 -7.8241 1.9987 18 6 3.7669 -8.5811 2.7290 19 8 4.1194 -9.6712 2.3160 20 6 4.2372 -8.1118 3.9790 21 6 5.1707 -8.8202 4.6616 22 6 5.8166 -9.9191 4.0446 23 6 6.1396 -11.1162 4.6493 24 6 6.7597 -11.9046 3.6681 25 6 6.7985 -11.1724 2.5328 26 8 6.2312 -9.9800 2.7620 27 6 1.0856 -7.7221 -1.3118 28 6 -0.3988 -7.6353 -1.6722 29 6 0.2504 -8.9991 -1.4232 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 -0.0002 32 1 0.6174 -4.9205 -0.8902 33 1 0.6166 -4.9209 0.8897 34 1 2.7942 -5.9463 -0.8128 35 1 3.2765 -8.4866 0.0402 36 1 1.8878 -9.2447 0.8557 37 1 2.6438 -6.9557 2.3275 38 1 3.8525 -7.1897 4.3890 39 1 5.4217 -8.5462 5.6757 40 1 5.9505 -11.3931 5.6760 41 1 7.1391 -12.9075 3.7971 42 1 7.2193 -11.4960 1.5921 43 1 1.8081 -7.5227 -2.1033 44 1 -1.0802 -7.2558 -0.9107 45 1 -0.6529 -7.3792 -2.7007 46 1 0.4230 -9.6396 -2.2880 47 1 -0.0042 -9.5162 -0.4981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752445451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:13 Heat of formation + Delta-G solvation = -24.962530 kcal Electronic energy + Delta-G solvation = -29632.885619 eV Core-core repulsion = 25397.123288 eV Total energy + Delta-G solvation = -4235.762331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.26807 -40.85884 -40.18138 -39.17760 -36.25076 -35.89285 -35.01609 -34.74368 -33.68800 -33.22817 -30.91388 -29.46226 -27.76148 -25.99131 -24.90256 -23.64676 -23.08523 -22.50914 -21.89543 -21.59762 -21.03388 -20.28104 -19.87064 -18.82823 -17.88402 -17.49956 -17.02156 -16.93350 -16.73569 -16.49343 -16.37131 -16.01019 -15.78553 -15.41955 -15.21096 -14.98419 -14.72217 -14.62783 -14.06138 -13.95519 -13.66790 -13.57015 -13.47339 -13.36113 -13.13897 -13.08620 -12.94334 -12.68909 -12.43682 -12.39895 -12.21977 -12.11980 -11.48903 -11.41803 -11.09029 -11.00337 -10.86485 -10.64548 -10.31731 -9.98828 -9.89360 -9.33675 -8.85357 -8.45045 -5.93069 -0.32634 1.24368 1.38496 1.42576 1.54793 1.81205 2.09074 2.29436 2.35340 2.41830 2.60460 2.84937 2.92461 3.22694 3.54462 3.71037 3.89184 3.93095 4.05783 4.10494 4.15963 4.19436 4.24932 4.34632 4.36703 4.47918 4.54249 4.56821 4.61362 4.73252 4.82289 4.84167 4.91145 4.94003 5.03424 5.11613 5.17285 5.20166 5.26457 5.41355 5.42830 5.58542 5.72564 5.89050 6.10191 6.32974 6.35111 6.62745 6.71201 7.15412 7.38411 7.59823 8.15539 8.72183 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.002306 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.907908 B =12139.207998 C =14145.754806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.622 6.622 12 C 0.069 3.931 13 N -0.666 5.666 14 C 0.118 3.882 15 H 0.097 0.903 16 C 0.146 3.854 17 N -0.705 5.705 18 C 0.526 3.474 19 O -0.572 6.572 20 C -0.217 4.217 21 C 0.004 3.996 22 C -0.017 4.017 23 C -0.189 4.189 24 C -0.232 4.232 25 C -0.038 4.038 26 O -0.162 6.162 27 C -0.194 4.194 28 C -0.173 4.173 29 C -0.163 4.163 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.345 0.655 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.412 0.588 38 H 0.164 0.836 39 H 0.194 0.806 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.218 0.782 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -21.693 6.412 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.508 6.508 12 C -0.063 4.063 13 N -0.297 5.297 14 C 0.008 3.992 15 H 0.115 0.885 16 C 0.021 3.979 17 N -0.355 5.355 18 C 0.317 3.683 19 O -0.454 6.454 20 C -0.237 4.237 21 C -0.016 4.016 22 C -0.067 4.067 23 C -0.208 4.208 24 C -0.251 4.251 25 C -0.108 4.108 26 O -0.056 6.056 27 C -0.215 4.215 28 C -0.210 4.210 29 C -0.200 4.200 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.164 0.836 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.181 0.819 39 H 0.211 0.789 40 H 0.189 0.811 41 H 0.187 0.813 42 H 0.235 0.765 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.119 0.881 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.890 -21.975 6.575 23.119 hybrid contribution -0.555 1.159 -1.106 1.696 sum 2.335 -20.816 5.469 21.648 Atomic orbital electron populations 1.69663 1.06722 1.29184 1.50505 1.25988 0.96526 1.02285 0.96472 0.84974 0.77940 0.77163 0.78551 1.19823 1.19574 1.19844 1.19622 0.92607 0.84083 1.49711 0.90477 1.41929 1.09308 1.04692 1.65241 1.20911 0.88234 0.86140 0.82014 1.90509 1.15918 1.87972 1.56447 1.21537 0.93782 0.87796 1.03234 1.60162 1.20616 1.00379 1.48510 1.21377 0.95968 0.87798 0.94106 0.88521 1.21115 0.96800 0.95951 0.84028 1.45774 1.47575 1.21719 1.20439 1.17629 0.79393 0.85054 0.86201 1.90825 1.58976 1.22799 1.72844 1.22491 1.02014 1.03036 0.96158 1.21157 0.91304 0.89075 1.00014 1.20203 1.05378 0.98966 0.82163 1.22538 1.03020 0.93380 1.01876 1.21984 1.07082 1.02732 0.93289 1.24769 1.00568 0.83686 1.01780 1.84273 1.57669 1.35152 1.28505 1.23003 0.95481 1.04785 0.98215 1.23085 0.93925 1.00827 1.03121 1.22965 1.02793 0.90363 1.03928 0.91377 0.76990 0.91612 0.87411 0.83648 0.93549 0.90939 0.75192 0.81896 0.78926 0.81084 0.81337 0.76527 0.88232 0.88053 0.88490 0.88080 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 3 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.57 -28.50 5.29 -306.99 -1.62 -30.12 16 10 C 0.44 19.93 7.83 87.66 0.69 20.61 16 11 O -0.62 -33.45 15.86 -3.05 -0.05 -33.50 16 12 C 0.07 2.13 5.98 85.56 0.51 2.65 16 13 N -0.67 -18.91 5.25 -495.58 -2.60 -21.51 16 14 C 0.12 2.51 2.33 44.91 0.10 2.61 16 15 H 0.10 1.85 7.53 -2.39 -0.02 1.83 16 16 C 0.15 3.47 5.20 86.38 0.45 3.92 16 17 N -0.70 -17.67 5.38 -472.19 -2.54 -20.21 16 18 C 0.53 14.69 7.37 85.06 0.63 15.32 16 19 O -0.57 -19.39 12.39 19.16 0.24 -19.16 16 20 C -0.22 -4.66 9.85 22.48 0.22 -4.44 16 21 C 0.00 0.08 9.95 22.49 0.22 0.30 16 22 C -0.02 -0.43 5.33 23.03 0.12 -0.31 16 23 C -0.19 -3.94 10.90 22.71 0.25 -3.70 16 24 C -0.23 -4.68 10.87 22.07 0.24 -4.44 16 25 C -0.04 -0.88 12.06 67.11 0.81 -0.07 16 26 O -0.16 -4.77 7.79 17.67 0.14 -4.63 16 27 C -0.19 -3.73 5.06 -10.80 -0.05 -3.79 16 28 C -0.17 -2.91 10.18 30.62 0.31 -2.59 16 29 C -0.16 -2.57 9.88 30.62 0.30 -2.27 16 30 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 32 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 33 H 0.11 2.89 7.96 -2.38 -0.02 2.87 16 34 H 0.34 10.88 8.20 -89.70 -0.74 10.15 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.65 7.77 -2.39 -0.02 1.63 16 37 H 0.41 9.76 8.10 -92.71 -0.75 9.01 16 38 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 42 H 0.22 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.10 2.09 7.98 -2.39 -0.02 2.07 16 44 H 0.10 1.61 8.08 -2.39 -0.02 1.59 16 45 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.10 1.49 7.95 -2.39 -0.02 1.47 16 Total: -1.00 -75.08 403.58 0.76 -74.32 By element: Atomic # 1 Polarization: 54.01 SS G_CDS: -1.20 Total: 52.82 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 6.08 Total: 5.96 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -6.48 Total: -120.33 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: 0.33 Total: -57.29 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -75.08 0.76 -74.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752445451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.359 kcal (2) G-P(sol) polarization free energy of solvation -75.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds