Wall clock time and date at job start Wed Apr 1 2020 05:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48504 * 109.47361 * 270.00400 * 3 2 1 5 5 H 1.48504 * 109.47071 * 30.00355 * 3 2 1 6 6 H 1.48500 * 109.47408 * 150.00323 * 3 2 1 7 7 C 1.38951 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99965 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00290 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99864 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47095 * 186.54140 * 12 10 9 14 14 C 1.47956 * 110.99564 * 56.39202 * 13 12 10 15 15 C 1.55521 * 104.64593 * 146.70885 * 14 13 12 16 16 H 1.09007 * 113.14321 * 201.98703 * 15 14 13 17 17 C 1.52940 * 107.02614 * 77.81357 * 15 14 13 18 18 C 1.52757 * 110.76120 * 195.09014 * 17 15 14 19 19 C 1.53404 * 108.50156 * 63.62381 * 18 17 15 20 20 N 1.46808 * 107.68759 * 302.10537 * 19 18 17 21 21 C 1.34777 * 119.62583 * 232.21241 * 20 19 18 22 22 O 1.21694 * 119.99431 * 181.92795 * 21 20 19 23 23 C 1.46655 * 120.00257 * 1.92980 * 21 20 19 24 24 C 1.36538 * 125.98637 * 171.89993 * 23 21 20 25 25 C 1.40369 * 106.70513 * 179.97438 * 24 23 21 26 26 C 1.35128 * 107.11892 * 359.97438 * 25 24 23 27 27 O 1.33938 * 108.76344 * 359.76200 * 26 25 24 28 28 C 1.45185 * 120.74769 * 52.19561 * 20 19 18 29 29 H 1.08998 * 109.56428 * 192.26636 * 28 20 19 30 30 C 1.47704 * 110.99801 * 177.09323 * 13 12 10 31 31 H 0.96998 * 120.00229 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99920 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47199 * 66.54692 * 12 10 9 34 34 H 1.08999 * 109.46961 * 306.54995 * 12 10 9 35 35 H 1.08993 * 110.40288 * 27.91590 * 14 13 12 36 36 H 1.08999 * 110.39535 * 265.49700 * 14 13 12 37 37 H 1.08998 * 109.22176 * 315.42112 * 17 15 14 38 38 H 1.09004 * 109.21786 * 74.76221 * 17 15 14 39 39 H 1.08998 * 109.63538 * 183.33986 * 18 17 15 40 40 H 1.09001 * 109.63243 * 303.92655 * 18 17 15 41 41 H 1.09004 * 109.81657 * 182.56124 * 19 18 17 42 42 H 1.09002 * 109.86088 * 61.68626 * 19 18 17 43 43 H 1.07995 * 126.65272 * 359.95518 * 24 23 21 44 44 H 1.08004 * 126.44043 * 179.97438 * 25 24 23 45 45 H 1.07998 * 125.61996 * 180.02562 * 26 25 24 46 46 H 1.09000 * 109.99194 * 117.48669 * 30 13 12 47 47 H 1.08996 * 109.99415 * 356.15477 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1906 -5.9750 0.1557 14 6 2.9980 -5.8133 1.3850 15 6 3.2506 -7.2648 1.8832 16 1 3.4907 -7.3175 2.9452 17 6 4.3597 -7.8517 1.0087 18 6 4.4251 -9.3700 1.1637 19 6 3.1088 -9.9687 0.6515 20 7 2.0150 -9.3699 1.4263 21 6 1.1105 -10.1674 2.0282 22 8 0.1813 -9.6778 2.6427 23 6 1.2462 -11.6252 1.9426 24 6 0.5004 -12.5419 2.6265 25 6 0.9666 -13.8089 2.2422 26 6 1.9636 -13.6125 1.3514 27 8 2.1254 -12.2955 1.1693 28 6 1.8969 -7.9283 1.5517 29 1 1.1698 -7.6878 2.3273 30 6 1.4807 -7.2681 0.2292 31 1 -0.4850 0.8400 0.0004 32 1 0.3534 -2.3907 -0.0016 33 1 0.7083 -4.9729 -0.9452 34 1 0.5319 -4.8718 0.8231 35 1 2.4430 -5.2463 2.1322 36 1 3.9428 -5.3201 1.1567 37 1 4.1621 -7.6057 -0.0346 38 1 5.3159 -7.4194 1.3037 39 1 5.2577 -9.7623 0.5799 40 1 4.5588 -9.6254 2.2149 41 1 3.1142 -11.0494 0.7942 42 1 2.9831 -9.7364 -0.4060 43 1 -0.2941 -12.3328 3.3275 44 1 0.5978 -14.7616 2.5925 45 1 2.5330 -14.3896 0.8632 46 1 1.7701 -7.9004 -0.6102 47 1 0.4033 -7.1030 0.2178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754870725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:52 Heat of formation + Delta-G solvation = -22.830757 kcal Electronic energy + Delta-G solvation = -30930.033590 eV Core-core repulsion = 26694.363700 eV Total energy + Delta-G solvation = -4235.669890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.15438 -40.85563 -38.96042 -37.88757 -36.02225 -33.90413 -33.61274 -33.09326 -31.58324 -31.12985 -30.25083 -28.29940 -26.96751 -25.48705 -24.37781 -23.19267 -22.62910 -22.12748 -21.04029 -20.67139 -19.35597 -19.02855 -17.87227 -17.81457 -17.18682 -16.70526 -16.34406 -15.88443 -15.68937 -15.04299 -14.85745 -14.67424 -14.43315 -14.11049 -13.94871 -13.78408 -13.61531 -13.43044 -13.22910 -13.04914 -12.91418 -12.72511 -12.46222 -12.38286 -11.87078 -11.58311 -11.49668 -11.36662 -11.26233 -10.96090 -10.88677 -10.54054 -10.47018 -10.40255 -10.36181 -10.25302 -10.20749 -9.47898 -9.17540 -8.82670 -8.37945 -7.97034 -7.85778 -6.40354 -3.81179 0.70926 1.98151 2.20381 2.75772 2.88854 3.18640 3.27224 3.32825 3.92003 4.02665 4.11237 4.28070 4.44765 4.50558 4.60097 4.66078 4.75669 4.79302 4.88615 5.04221 5.13206 5.24831 5.26689 5.29646 5.32602 5.40315 5.48783 5.56992 5.60205 5.71654 5.77599 5.80269 5.86810 5.92855 5.94629 6.00186 6.08693 6.13057 6.29783 6.34619 6.41458 6.49156 6.57391 7.05252 7.23846 7.27036 7.56285 7.76944 8.07281 8.62865 9.19157 9.55714 10.07177 10.77389 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028475 B = 0.002126 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.084315 B =13168.407337 C =13767.069188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.039 3.961 13 N -0.499 5.499 14 C 0.059 3.941 15 C -0.108 4.108 16 H 0.089 0.911 17 C -0.112 4.112 18 C -0.132 4.132 19 C 0.087 3.913 20 N -0.583 5.583 21 C 0.597 3.403 22 O -0.521 6.521 23 C -0.074 4.074 24 C -0.120 4.120 25 C -0.223 4.223 26 C -0.019 4.019 27 O -0.155 6.155 28 C 0.124 3.876 29 H 0.102 0.898 30 C 0.034 3.966 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.160 0.840 44 H 0.156 0.844 45 H 0.209 0.791 46 H 0.079 0.921 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 -27.925 3.020 28.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.463 6.463 12 C -0.093 4.093 13 N -0.224 5.224 14 C -0.068 4.068 15 C -0.127 4.127 16 H 0.107 0.893 17 C -0.149 4.149 18 C -0.170 4.170 19 C -0.034 4.034 20 N -0.314 5.314 21 C 0.385 3.615 22 O -0.399 6.399 23 C -0.125 4.125 24 C -0.140 4.140 25 C -0.242 4.242 26 C -0.087 4.087 27 O -0.052 6.052 28 C 0.019 3.981 29 H 0.120 0.880 30 C -0.095 4.095 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.094 0.906 43 H 0.177 0.823 44 H 0.173 0.827 45 H 0.225 0.775 46 H 0.097 0.903 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.188 -27.281 2.698 27.732 hybrid contribution -0.992 0.637 0.697 1.369 sum 3.196 -26.644 3.395 27.049 Atomic orbital electron populations 1.69613 1.05935 1.28147 1.50581 1.25269 0.95636 0.99733 0.97378 0.85858 0.79202 0.80841 0.78375 1.20414 1.20964 1.19442 1.19689 0.93332 0.82189 1.47559 0.87909 1.41868 1.09212 1.04596 1.64367 1.19702 0.88392 0.84543 0.84533 1.90495 1.13601 1.86961 1.55277 1.22148 0.94056 0.91255 1.01827 1.63516 1.21433 0.99903 1.37511 1.23232 1.00376 0.93668 0.89550 1.22674 0.94095 0.96060 0.99905 0.89276 1.21483 0.98212 0.93734 1.01497 1.21892 0.96573 0.96869 1.01673 1.22506 0.85822 0.99346 0.95749 1.47435 1.27350 1.06192 1.50414 1.16812 0.82412 0.82868 0.79438 1.90888 1.32103 1.73668 1.43273 1.22069 0.96852 0.92855 1.00729 1.21988 1.00262 0.91262 1.00533 1.21860 1.00556 0.99125 1.02623 1.24601 1.00182 0.83589 1.00362 1.84241 1.48757 1.18209 1.54011 1.21798 0.98762 0.78326 0.99186 0.87981 1.23056 0.97816 0.91775 0.96828 0.91878 0.77478 0.89167 0.93375 0.93820 0.87661 0.89979 0.91423 0.90485 0.91707 0.87074 0.90597 0.82259 0.82665 0.77484 0.90292 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.37 5.29 -10.96 -0.06 -14.42 16 10 C 0.44 10.44 7.35 -10.99 -0.08 10.36 16 11 O -0.58 -15.32 13.94 5.55 0.08 -15.24 16 12 C 0.04 0.71 5.06 -4.98 -0.03 0.68 16 13 N -0.50 -8.32 4.66 -232.46 -1.08 -9.40 16 14 C 0.06 0.97 4.59 -1.90 -0.01 0.96 16 15 C -0.11 -1.37 3.71 -88.59 -0.33 -1.70 16 16 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 17 C -0.11 -1.25 4.82 -26.89 -0.13 -1.38 16 18 C -0.13 -1.16 6.10 -26.65 -0.16 -1.33 16 19 C 0.09 0.80 6.00 -3.66 -0.02 0.78 16 20 N -0.58 -6.82 2.72 -166.96 -0.45 -7.27 16 21 C 0.60 7.71 7.63 -12.86 -0.10 7.61 16 22 O -0.52 -8.33 16.20 5.19 0.08 -8.25 16 23 C -0.07 -0.78 6.81 -36.80 -0.25 -1.03 16 24 C -0.12 -1.11 10.63 -39.39 -0.42 -1.52 16 25 C -0.22 -1.45 10.87 -39.89 -0.43 -1.89 16 26 C -0.02 -0.10 12.08 29.63 0.36 0.25 16 27 O -0.16 -1.28 7.03 4.97 0.03 -1.25 16 28 C 0.12 1.62 2.92 -67.63 -0.20 1.42 16 29 H 0.10 1.50 6.95 -51.93 -0.36 1.14 16 30 C 0.03 0.48 6.09 -3.09 -0.02 0.46 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.76 7.76 -51.93 -0.40 0.36 16 36 H 0.11 1.98 6.80 -51.93 -0.35 1.62 16 37 H 0.08 1.05 7.27 -51.93 -0.38 0.67 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.11 0.92 3.73 -55.76 -0.21 0.71 16 42 H 0.08 0.68 7.54 -51.93 -0.39 0.29 16 43 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.16 0.63 8.06 -52.48 -0.42 0.21 16 45 H 0.21 0.30 8.06 -52.49 -0.42 -0.12 16 46 H 0.08 1.04 7.26 -51.93 -0.38 0.66 16 47 H 0.06 0.83 7.59 -51.93 -0.39 0.44 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -32.91 374.90 -8.61 -41.52 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.50 Total: 10.84 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: -2.06 Total: 5.69 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.87 Total: -55.11 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.20 Total: -24.73 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.91 -8.61 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754870725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.687 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds