Wall clock time and date at job start Wed Apr 1 2020 05:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48504 * 109.47361 * 270.00400 * 3 2 1 5 5 H 1.48504 * 109.47071 * 30.00355 * 3 2 1 6 6 H 1.48500 * 109.47408 * 150.00323 * 3 2 1 7 7 C 1.38951 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99965 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00290 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99864 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47095 * 186.54140 * 12 10 9 14 14 C 1.47956 * 110.99564 * 56.39202 * 13 12 10 15 15 C 1.55521 * 104.64593 * 146.70885 * 14 13 12 16 16 H 1.09007 * 113.14321 * 201.98703 * 15 14 13 17 17 C 1.52940 * 107.02614 * 77.81357 * 15 14 13 18 18 C 1.52757 * 110.76120 * 195.09014 * 17 15 14 19 19 C 1.53404 * 108.50156 * 63.62381 * 18 17 15 20 20 N 1.46808 * 107.68759 * 302.10537 * 19 18 17 21 21 C 1.34777 * 119.62583 * 232.21241 * 20 19 18 22 22 O 1.21694 * 119.99431 * 181.92795 * 21 20 19 23 23 C 1.46655 * 120.00257 * 1.92980 * 21 20 19 24 24 C 1.36538 * 125.98637 * 171.89993 * 23 21 20 25 25 C 1.40369 * 106.70513 * 179.97438 * 24 23 21 26 26 C 1.35128 * 107.11892 * 359.97438 * 25 24 23 27 27 O 1.33938 * 108.76344 * 359.76200 * 26 25 24 28 28 C 1.45185 * 120.74769 * 52.19561 * 20 19 18 29 29 H 1.08998 * 109.56428 * 192.26636 * 28 20 19 30 30 C 1.47704 * 110.99801 * 177.09323 * 13 12 10 31 31 H 0.96998 * 120.00229 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99920 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47199 * 66.54692 * 12 10 9 34 34 H 1.08999 * 109.46961 * 306.54995 * 12 10 9 35 35 H 1.08993 * 110.40288 * 27.91590 * 14 13 12 36 36 H 1.08999 * 110.39535 * 265.49700 * 14 13 12 37 37 H 1.08998 * 109.22176 * 315.42112 * 17 15 14 38 38 H 1.09004 * 109.21786 * 74.76221 * 17 15 14 39 39 H 1.08998 * 109.63538 * 183.33986 * 18 17 15 40 40 H 1.09001 * 109.63243 * 303.92655 * 18 17 15 41 41 H 1.09004 * 109.81657 * 182.56124 * 19 18 17 42 42 H 1.09002 * 109.86088 * 61.68626 * 19 18 17 43 43 H 1.07995 * 126.65272 * 359.95518 * 24 23 21 44 44 H 1.08004 * 126.44043 * 179.97438 * 25 24 23 45 45 H 1.07998 * 125.61996 * 180.02562 * 26 25 24 46 46 H 1.09000 * 109.99194 * 117.48669 * 30 13 12 47 47 H 1.08996 * 109.99415 * 356.15477 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 7 2.1906 -5.9750 0.1557 14 6 2.9980 -5.8133 1.3850 15 6 3.2506 -7.2648 1.8832 16 1 3.4907 -7.3175 2.9452 17 6 4.3597 -7.8517 1.0087 18 6 4.4251 -9.3700 1.1637 19 6 3.1088 -9.9687 0.6515 20 7 2.0150 -9.3699 1.4263 21 6 1.1105 -10.1674 2.0282 22 8 0.1813 -9.6778 2.6427 23 6 1.2462 -11.6252 1.9426 24 6 0.5004 -12.5419 2.6265 25 6 0.9666 -13.8089 2.2422 26 6 1.9636 -13.6125 1.3514 27 8 2.1254 -12.2955 1.1693 28 6 1.8969 -7.9283 1.5517 29 1 1.1698 -7.6878 2.3273 30 6 1.4807 -7.2681 0.2292 31 1 -0.4850 0.8400 0.0004 32 1 0.3534 -2.3907 -0.0016 33 1 0.7083 -4.9729 -0.9452 34 1 0.5319 -4.8718 0.8231 35 1 2.4430 -5.2463 2.1322 36 1 3.9428 -5.3201 1.1567 37 1 4.1621 -7.6057 -0.0346 38 1 5.3159 -7.4194 1.3037 39 1 5.2577 -9.7623 0.5799 40 1 4.5588 -9.6254 2.2149 41 1 3.1142 -11.0494 0.7942 42 1 2.9831 -9.7364 -0.4060 43 1 -0.2941 -12.3328 3.3275 44 1 0.5978 -14.7616 2.5925 45 1 2.5330 -14.3896 0.8632 46 1 1.7701 -7.9004 -0.6102 47 1 0.4033 -7.1030 0.2178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754870725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:51 Heat of formation + Delta-G solvation = -46.245747 kcal Electronic energy + Delta-G solvation = -30931.048940 eV Core-core repulsion = 26694.363700 eV Total energy + Delta-G solvation = -4236.685241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.75780 -41.90561 -40.37864 -39.39196 -37.19373 -35.89750 -34.38993 -33.93955 -33.31156 -32.55724 -31.01466 -29.44040 -28.43279 -26.69460 -25.95093 -24.15087 -23.47640 -22.71935 -22.27214 -21.55908 -20.99498 -20.14286 -19.84968 -18.64482 -17.99948 -17.69210 -17.38323 -17.31791 -16.95308 -16.45780 -16.13436 -15.91982 -15.70334 -15.45878 -15.37653 -14.94328 -14.54360 -14.40645 -14.27322 -14.16149 -13.86652 -13.77738 -13.57824 -13.47150 -13.44311 -13.25319 -12.99470 -12.58355 -12.55690 -12.42441 -12.33869 -12.12725 -11.83620 -11.57172 -11.49021 -11.37227 -11.25033 -11.00825 -10.28608 -10.01992 -9.98288 -9.60448 -9.25385 -8.47244 -5.96061 0.00693 1.37244 1.40753 1.43777 1.47074 1.53811 1.96155 2.02939 2.06533 2.27854 2.77337 3.19254 3.27427 3.29667 3.54912 3.61434 3.79044 3.92345 3.98975 4.00483 4.11489 4.15863 4.22157 4.27098 4.39205 4.42323 4.49272 4.54038 4.61131 4.64966 4.73147 4.76359 4.85543 4.91980 5.01488 5.07606 5.08315 5.13247 5.25063 5.37718 5.40220 5.48247 5.53428 5.79938 5.87144 5.92225 6.04915 6.21254 6.58839 6.84276 7.11483 7.54319 8.09306 8.70313 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028475 B = 0.002126 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.084315 B =13168.407337 C =13767.069188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.016 4.016 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.081 0.919 9 N -0.574 5.574 10 C 0.442 3.558 11 O -0.610 6.610 12 C 0.049 3.951 13 N -0.508 5.508 14 C 0.062 3.938 15 C -0.096 4.096 16 H 0.096 0.904 17 C -0.108 4.108 18 C -0.122 4.122 19 C 0.085 3.915 20 N -0.581 5.581 21 C 0.593 3.407 22 O -0.566 6.566 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.234 4.234 26 C 0.007 3.993 27 O -0.158 6.158 28 C 0.131 3.869 29 H 0.082 0.918 30 C 0.040 3.960 31 H 0.277 0.723 32 H 0.395 0.605 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.024 0.976 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.154 0.846 44 H 0.181 0.819 45 H 0.256 0.744 46 H 0.092 0.908 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -30.667 2.379 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.099 0.901 9 N -0.212 5.212 10 C 0.229 3.771 11 O -0.496 6.496 12 C -0.082 4.082 13 N -0.233 5.233 14 C -0.066 4.066 15 C -0.115 4.115 16 H 0.115 0.885 17 C -0.146 4.146 18 C -0.160 4.160 19 C -0.035 4.035 20 N -0.310 5.310 21 C 0.383 3.617 22 O -0.448 6.448 23 C -0.157 4.157 24 C -0.144 4.144 25 C -0.252 4.252 26 C -0.061 4.061 27 O -0.055 6.055 28 C 0.026 3.974 29 H 0.100 0.900 30 C -0.088 4.088 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.145 0.855 42 H 0.100 0.900 43 H 0.171 0.829 44 H 0.198 0.802 45 H 0.272 0.728 46 H 0.110 0.890 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.974 -30.050 2.040 30.527 hybrid contribution -1.220 1.334 0.887 2.014 sum 3.753 -28.716 2.928 29.108 Atomic orbital electron populations 1.69681 1.06906 1.29281 1.50425 1.26079 0.96559 1.02531 0.96352 0.84905 0.77860 0.76766 0.78664 1.19582 1.19660 1.19659 1.19667 0.92719 0.83842 1.49761 0.90092 1.41941 1.09285 1.04756 1.65191 1.20591 0.88305 0.85718 0.82436 1.90474 1.15303 1.87728 1.56122 1.22037 0.93817 0.88941 1.03405 1.63484 1.21560 1.00469 1.37758 1.23067 0.98713 0.95701 0.89134 1.22604 0.94800 0.93513 1.00614 0.88545 1.21434 0.97377 0.95757 1.00016 1.21853 0.97268 0.94580 1.02322 1.22723 0.84931 1.00235 0.95628 1.47478 1.27842 1.05312 1.50414 1.17144 0.81787 0.84069 0.78674 1.90850 1.33843 1.74808 1.45261 1.21573 0.99139 0.91760 1.03230 1.22230 0.99685 0.92623 0.99848 1.22186 1.00997 0.98944 1.03085 1.25559 0.99005 0.82978 0.98567 1.84166 1.48265 1.19421 1.53647 1.21531 0.98178 0.79631 0.98094 0.89952 1.23050 0.97660 0.90398 0.97735 0.91338 0.77159 0.87177 0.92034 0.95709 0.90460 0.91405 0.91252 0.87896 0.91509 0.85506 0.90018 0.82855 0.80151 0.72842 0.88985 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.78 13.05 21.66 0.28 -50.49 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 3 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.93 7.16 -2.91 -0.02 4.90 16 9 N -0.57 -30.20 5.29 -306.98 -1.62 -31.82 16 10 C 0.44 21.52 7.35 87.66 0.64 22.17 16 11 O -0.61 -33.60 13.94 -3.07 -0.04 -33.65 16 12 C 0.05 1.82 5.06 85.56 0.43 2.26 16 13 N -0.51 -17.16 4.66 -889.36 -4.15 -21.31 16 14 C 0.06 2.11 4.59 86.97 0.40 2.51 16 15 C -0.10 -2.47 3.71 -9.48 -0.04 -2.50 16 16 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 17 C -0.11 -2.34 4.82 30.49 0.15 -2.19 16 18 C -0.12 -1.87 6.10 30.65 0.19 -1.68 16 19 C 0.08 1.38 6.00 86.46 0.52 1.90 16 20 N -0.58 -13.22 2.72 -800.36 -2.17 -15.39 16 21 C 0.59 15.36 7.63 86.44 0.66 16.02 16 22 O -0.57 -18.82 16.20 -4.33 -0.07 -18.89 16 23 C -0.11 -2.11 6.81 24.07 0.16 -1.95 16 24 C -0.12 -2.13 10.63 22.39 0.24 -1.89 16 25 C -0.23 -2.30 10.87 22.07 0.24 -2.06 16 26 C 0.01 0.05 12.08 67.10 0.81 0.86 16 27 O -0.16 -2.14 7.03 -5.12 -0.04 -2.17 16 28 C 0.13 3.45 2.92 45.89 0.13 3.59 16 29 H 0.08 2.52 6.95 -2.39 -0.02 2.51 16 30 C 0.04 1.10 6.09 86.34 0.53 1.63 16 31 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.39 19.93 7.90 -92.71 -0.73 19.20 16 33 H 0.11 3.65 8.14 -2.38 -0.02 3.63 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.02 0.91 7.76 -2.39 -0.02 0.90 16 36 H 0.08 3.07 6.80 -2.39 -0.02 3.06 16 37 H 0.07 1.68 7.27 -2.39 -0.02 1.67 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.13 1.73 3.73 -63.02 -0.24 1.49 16 42 H 0.08 1.26 7.54 -2.39 -0.02 1.25 16 43 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 44 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 45 H 0.26 -0.83 8.06 -2.91 -0.02 -0.86 16 46 H 0.09 2.30 7.26 -2.39 -0.02 2.28 16 47 H 0.06 1.69 7.59 -2.39 -0.02 1.68 16 Total: -1.00 -74.58 374.90 0.62 -73.96 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.05 Total: 34.13 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 6.35 Total: 20.07 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -7.66 Total: -119.02 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -0.15 Total: -54.71 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -74.58 0.62 -73.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754870725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.716 kcal (2) G-P(sol) polarization free energy of solvation -74.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds