Wall clock time and date at job start Wed Apr 1 2020 05:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99780 * 2 1 4 4 H 1.48501 * 109.47335 * 239.99763 * 3 2 1 5 5 H 1.48499 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46924 * 120.00144 * 3 2 1 7 7 C 1.38810 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99711 * 189.09922 * 7 2 1 9 9 N 1.36933 * 119.99962 * 9.09120 * 7 2 1 10 10 C 1.48012 * 127.84189 * 15.64728 * 9 7 2 11 11 C 1.54387 * 104.64861 * 140.40432 * 10 9 7 12 12 H 1.09004 * 118.18209 * 244.22908 * 11 10 9 13 13 C 1.53005 * 118.12352 * 87.22229 * 11 10 9 14 14 H 1.08995 * 117.44130 * 16.06040 * 13 11 10 15 15 C 1.52991 * 117.44440 * 160.81283 * 13 11 10 16 16 N 1.46499 * 109.47435 * 185.16647 * 15 13 11 17 17 C 1.34777 * 120.00507 * 179.97438 * 16 15 13 18 18 O 1.21276 * 119.99850 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00000 * 180.02562 * 17 16 15 20 20 C 1.53006 * 109.46912 * 179.97438 * 19 17 16 21 21 N 1.46494 * 109.46873 * 179.97438 * 20 19 17 22 22 C 1.34784 * 119.99846 * 179.72503 * 21 20 19 23 23 O 1.21691 * 119.99601 * 0.27480 * 22 21 20 24 24 C 1.46663 * 119.99801 * 180.27728 * 22 21 20 25 25 C 1.36541 * 125.98265 * 179.71316 * 24 22 21 26 26 C 1.40364 * 106.70879 * 179.91223 * 25 24 22 27 27 C 1.35134 * 107.11165 * 0.35326 * 26 25 24 28 28 O 1.33932 * 108.76975 * 359.78144 * 27 26 25 29 29 C 1.53001 * 60.49438 * 268.43409 * 13 11 10 30 30 H 1.09001 * 119.54385 * 248.25332 * 29 13 11 31 31 C 1.48142 * 127.84046 * 195.58496 * 9 7 2 32 32 H 0.97006 * 120.00094 * 359.97438 * 1 2 3 33 33 H 1.09003 * 110.36846 * 21.62201 * 10 9 7 34 34 H 1.09001 * 110.41894 * 259.20857 * 10 9 7 35 35 H 1.08999 * 109.47725 * 65.15835 * 15 13 11 36 36 H 1.09007 * 109.47228 * 305.16270 * 15 13 11 37 37 H 0.97001 * 119.99760 * 359.97438 * 16 15 13 38 38 H 1.08993 * 109.47559 * 59.99611 * 19 17 16 39 39 H 1.09004 * 109.47133 * 299.99295 * 19 17 16 40 40 H 1.09000 * 109.46980 * 59.99898 * 20 19 17 41 41 H 1.08995 * 109.46958 * 299.99937 * 20 19 17 42 42 H 0.97001 * 120.00305 * 0.02562 * 21 20 19 43 43 H 1.07998 * 126.64872 * 0.03703 * 25 24 22 44 44 H 1.07998 * 126.45095 * 180.11955 * 26 25 24 45 45 H 1.08004 * 125.61962 * 179.78539 * 27 26 25 46 46 H 1.09000 * 110.40961 * 100.80627 * 31 9 7 47 47 H 1.08996 * 110.40983 * 338.37436 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0800 -1.2080 0.1474 9 7 1.3385 -2.3805 -0.1884 10 6 -0.0324 -2.5705 -0.7130 11 6 0.0656 -3.8164 -1.6195 12 1 -0.1202 -3.6927 -2.6864 13 6 -0.1184 -5.1925 -0.9763 14 1 -0.5686 -5.2271 0.0157 15 6 -0.4673 -6.3614 -1.8997 16 7 -0.7232 -7.5591 -1.0959 17 6 -1.0517 -8.7185 -1.6997 18 8 -1.1358 -8.7700 -2.9084 19 6 -1.3154 -9.9504 -0.8727 20 6 -1.6655 -11.1191 -1.7961 21 7 -1.9213 -12.3168 -0.9922 22 6 -2.2556 -13.4747 -1.5957 23 8 -2.3400 -13.5264 -2.8086 24 6 -2.5177 -14.6722 -0.7906 25 6 -2.8688 -15.9010 -1.2712 26 6 -3.0164 -16.7428 -0.1577 27 6 -2.7600 -15.9982 0.9404 28 8 -2.4598 -14.7511 0.5550 29 6 1.2861 -4.5968 -1.0929 30 1 2.0097 -5.0545 -1.7674 31 6 1.8195 -3.7545 0.0860 32 1 -0.4850 0.8401 0.0004 33 1 -0.3402 -1.7011 -1.2939 34 1 -0.7310 -2.7492 0.1044 35 1 0.3650 -6.5498 -2.5778 36 1 -1.3580 -6.1146 -2.4776 37 1 -0.6562 -7.5178 -0.1291 38 1 -2.1477 -9.7616 -0.1947 39 1 -0.4249 -10.1976 -0.2948 40 1 -0.8334 -11.3081 -2.4744 41 1 -2.5561 -10.8716 -2.3737 42 1 -1.8544 -12.2755 -0.0254 43 1 -3.0045 -16.1732 -2.3075 44 1 -3.2880 -17.7879 -0.1750 45 1 -2.7917 -16.3506 1.9608 46 1 1.4113 -4.1189 1.0287 47 1 2.9090 -3.7786 0.1080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755436353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:17 Heat of formation + Delta-G solvation = 1.661460 kcal Electronic energy + Delta-G solvation = -28117.543573 eV Core-core repulsion = 23882.935745 eV Total energy + Delta-G solvation = -4234.607828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.18073 -40.20862 -39.63175 -38.77790 -35.77897 -35.01970 -33.60056 -33.39300 -31.88071 -30.87301 -30.08585 -27.51737 -27.14947 -25.40848 -24.36572 -22.82825 -22.21330 -21.19101 -21.03806 -20.67106 -19.81007 -19.29287 -18.99351 -17.40969 -16.91436 -16.84397 -16.78942 -16.29677 -16.13518 -15.85993 -15.16506 -14.81343 -14.60996 -14.28816 -14.21400 -13.77032 -13.59479 -13.52117 -13.41743 -13.16478 -13.05669 -12.78391 -12.68398 -12.33757 -11.92233 -11.86076 -11.28356 -11.14145 -10.83998 -10.81492 -10.69125 -10.59052 -10.34623 -10.18832 -10.12904 -9.76797 -9.67028 -9.46311 -9.18885 -9.17432 -9.00229 -8.66394 -6.89954 -5.82660 -3.17176 0.55812 1.84206 2.12459 2.44253 2.58190 2.72938 3.16011 3.36935 3.41795 3.42872 4.08756 4.12094 4.28706 4.38121 4.43928 4.52828 4.61750 4.62151 4.86031 5.01041 5.10166 5.25161 5.25935 5.35390 5.35971 5.41631 5.44570 5.47061 5.58070 5.75532 5.78627 5.83040 5.85120 5.87749 5.93512 6.19435 6.27571 6.28022 6.51844 6.62124 6.66789 6.88085 6.94307 7.31665 7.34942 7.49884 7.60050 7.68729 8.04160 8.18339 9.08289 9.71040 10.47840 11.31565 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.036669 B = 0.001285 C = 0.001262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.414448 B =21791.094993 C =22183.547469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.184 3.816 11 C -0.162 4.162 12 H 0.103 0.897 13 C -0.150 4.150 14 H 0.103 0.897 15 C 0.154 3.846 16 N -0.722 5.722 17 C 0.515 3.485 18 O -0.539 6.539 19 C -0.155 4.155 20 C 0.133 3.867 21 N -0.721 5.721 22 C 0.603 3.397 23 O -0.514 6.514 24 C -0.081 4.081 25 C -0.119 4.119 26 C -0.225 4.225 27 C -0.005 4.005 28 O -0.165 6.165 29 C -0.172 4.172 30 H 0.103 0.897 31 C 0.154 3.846 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.403 0.597 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.405 0.595 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.211 0.789 46 H 0.024 0.976 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 -31.610 3.879 32.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.182 4.182 12 H 0.121 0.879 13 C -0.169 4.169 14 H 0.121 0.879 15 C 0.031 3.969 16 N -0.373 5.373 17 C 0.300 3.700 18 O -0.416 6.416 19 C -0.195 4.195 20 C 0.010 3.990 21 N -0.373 5.373 22 C 0.389 3.611 23 O -0.391 6.391 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.244 4.244 27 C -0.075 4.075 28 O -0.061 6.061 29 C -0.192 4.192 30 H 0.121 0.879 31 C 0.028 3.972 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.237 0.763 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.240 0.760 43 H 0.179 0.821 44 H 0.175 0.825 45 H 0.228 0.772 46 H 0.041 0.959 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.331 -31.058 2.319 31.782 hybrid contribution 0.437 0.612 1.003 1.254 sum -5.894 -30.446 3.322 31.189 Atomic orbital electron populations 1.69885 1.05077 1.25583 1.55635 1.24891 0.95634 0.97976 1.01643 0.86193 0.78568 0.82915 0.78036 1.21037 1.21506 1.20980 1.18955 0.90806 0.82407 1.43615 0.90625 1.45159 1.13391 0.99986 1.73201 1.21040 0.86857 0.92747 0.93532 1.24229 1.02125 0.91720 1.00141 0.87867 1.22522 1.00363 0.93831 1.00227 0.87922 1.20896 1.01161 0.82163 0.92725 1.46028 1.70539 1.09839 1.10943 1.20230 0.76894 0.84326 0.88506 1.90759 1.51369 1.85121 1.14379 1.21807 1.04705 0.93458 0.99535 1.21128 1.03359 0.81686 0.92819 1.45866 1.70533 1.09817 1.11065 1.16502 0.77317 0.80946 0.86345 1.90930 1.52056 1.83881 1.12219 1.22072 1.13131 0.97399 0.80660 1.22027 0.99469 0.91211 1.01207 1.21906 1.08779 1.01937 0.91810 1.24457 1.01115 0.81265 1.00692 1.84055 1.68164 1.31653 1.22187 1.23984 0.89829 1.02629 1.02715 0.87924 1.21139 0.97147 0.86036 0.92919 0.93478 0.89187 0.95899 0.91338 0.91021 0.76286 0.87944 0.87935 0.89942 0.89932 0.75973 0.82120 0.82474 0.77201 0.95873 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 10.87 55.49 0.60 -25.88 16 2 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 3 Si 0.91 21.69 29.56 -169.99 -5.03 16.66 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.33 10.35 -15.06 -0.16 -6.49 16 8 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 9 N -0.59 -14.96 3.38 -168.97 -0.57 -15.53 16 10 C 0.18 4.31 5.69 -2.48 -0.01 4.30 16 11 C -0.16 -2.96 6.85 -89.29 -0.61 -3.57 16 12 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 13 C -0.15 -2.17 5.40 -90.62 -0.49 -2.66 16 14 H 0.10 1.45 8.04 -51.93 -0.42 1.03 16 15 C 0.15 1.94 5.95 -4.05 -0.02 1.92 16 16 N -0.72 -7.18 5.56 -60.30 -0.33 -7.52 16 17 C 0.52 5.46 7.83 -10.99 -0.09 5.38 16 18 O -0.54 -8.12 15.98 5.56 0.09 -8.03 16 19 C -0.15 -0.97 5.81 -27.88 -0.16 -1.13 16 20 C 0.13 1.14 4.96 -4.04 -0.02 1.12 16 21 N -0.72 -5.30 5.55 -61.62 -0.34 -5.64 16 22 C 0.60 6.03 7.79 -12.86 -0.10 5.93 16 23 O -0.51 -7.03 16.86 5.20 0.09 -6.94 16 24 C -0.08 -0.67 7.13 -36.80 -0.26 -0.94 16 25 C -0.12 -0.89 10.62 -39.39 -0.42 -1.31 16 26 C -0.23 -1.14 10.88 -39.89 -0.43 -1.58 16 27 C -0.01 -0.02 12.08 29.63 0.36 0.33 16 28 O -0.17 -1.08 10.40 4.99 0.05 -1.02 16 29 C -0.17 -2.91 6.74 -89.29 -0.60 -3.51 16 30 H 0.10 1.62 8.12 -51.93 -0.42 1.20 16 31 C 0.15 3.12 7.04 -2.41 -0.02 3.10 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 2.38 6.51 -51.93 -0.34 2.04 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.93 7.94 -51.93 -0.41 0.51 16 36 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 37 H 0.40 2.96 8.40 -40.82 -0.34 2.62 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 42 H 0.41 1.86 8.23 -40.82 -0.34 1.52 16 43 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.16 0.43 8.06 -52.49 -0.42 0.00 16 45 H 0.21 0.02 8.06 -52.48 -0.42 -0.41 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -35.58 400.75 -9.42 -45.00 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.88 Total: 2.17 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -3.13 Total: 0.69 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.64 Total: -54.57 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.23 Total: -15.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.58 -9.42 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755436353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.658 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds