Wall clock time and date at job start Wed Apr 1 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99780 * 2 1 4 4 H 1.48501 * 109.47335 * 239.99763 * 3 2 1 5 5 H 1.48499 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46924 * 120.00144 * 3 2 1 7 7 C 1.38810 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99711 * 189.09922 * 7 2 1 9 9 N 1.36933 * 119.99962 * 9.09120 * 7 2 1 10 10 C 1.48012 * 127.84189 * 15.64728 * 9 7 2 11 11 C 1.54387 * 104.64861 * 140.40432 * 10 9 7 12 12 H 1.09004 * 118.18209 * 244.22908 * 11 10 9 13 13 C 1.53005 * 118.12352 * 87.22229 * 11 10 9 14 14 H 1.08995 * 117.44130 * 16.06040 * 13 11 10 15 15 C 1.52991 * 117.44440 * 160.81283 * 13 11 10 16 16 N 1.46499 * 109.47435 * 185.16647 * 15 13 11 17 17 C 1.34777 * 120.00507 * 179.97438 * 16 15 13 18 18 O 1.21276 * 119.99850 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00000 * 180.02562 * 17 16 15 20 20 C 1.53006 * 109.46912 * 179.97438 * 19 17 16 21 21 N 1.46494 * 109.46873 * 179.97438 * 20 19 17 22 22 C 1.34784 * 119.99846 * 179.72503 * 21 20 19 23 23 O 1.21691 * 119.99601 * 0.27480 * 22 21 20 24 24 C 1.46663 * 119.99801 * 180.27728 * 22 21 20 25 25 C 1.36541 * 125.98265 * 179.71316 * 24 22 21 26 26 C 1.40364 * 106.70879 * 179.91223 * 25 24 22 27 27 C 1.35134 * 107.11165 * 0.35326 * 26 25 24 28 28 O 1.33932 * 108.76975 * 359.78144 * 27 26 25 29 29 C 1.53001 * 60.49438 * 268.43409 * 13 11 10 30 30 H 1.09001 * 119.54385 * 248.25332 * 29 13 11 31 31 C 1.48142 * 127.84046 * 195.58496 * 9 7 2 32 32 H 0.97006 * 120.00094 * 359.97438 * 1 2 3 33 33 H 1.09003 * 110.36846 * 21.62201 * 10 9 7 34 34 H 1.09001 * 110.41894 * 259.20857 * 10 9 7 35 35 H 1.08999 * 109.47725 * 65.15835 * 15 13 11 36 36 H 1.09007 * 109.47228 * 305.16270 * 15 13 11 37 37 H 0.97001 * 119.99760 * 359.97438 * 16 15 13 38 38 H 1.08993 * 109.47559 * 59.99611 * 19 17 16 39 39 H 1.09004 * 109.47133 * 299.99295 * 19 17 16 40 40 H 1.09000 * 109.46980 * 59.99898 * 20 19 17 41 41 H 1.08995 * 109.46958 * 299.99937 * 20 19 17 42 42 H 0.97001 * 120.00305 * 0.02562 * 21 20 19 43 43 H 1.07998 * 126.64872 * 0.03703 * 25 24 22 44 44 H 1.07998 * 126.45095 * 180.11955 * 26 25 24 45 45 H 1.08004 * 125.61962 * 179.78539 * 27 26 25 46 46 H 1.09000 * 110.40961 * 100.80627 * 31 9 7 47 47 H 1.08996 * 110.40983 * 338.37436 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0800 -1.2080 0.1474 9 7 1.3385 -2.3805 -0.1884 10 6 -0.0324 -2.5705 -0.7130 11 6 0.0656 -3.8164 -1.6195 12 1 -0.1202 -3.6927 -2.6864 13 6 -0.1184 -5.1925 -0.9763 14 1 -0.5686 -5.2271 0.0157 15 6 -0.4673 -6.3614 -1.8997 16 7 -0.7232 -7.5591 -1.0959 17 6 -1.0517 -8.7185 -1.6997 18 8 -1.1358 -8.7700 -2.9084 19 6 -1.3154 -9.9504 -0.8727 20 6 -1.6655 -11.1191 -1.7961 21 7 -1.9213 -12.3168 -0.9922 22 6 -2.2556 -13.4747 -1.5957 23 8 -2.3400 -13.5264 -2.8086 24 6 -2.5177 -14.6722 -0.7906 25 6 -2.8688 -15.9010 -1.2712 26 6 -3.0164 -16.7428 -0.1577 27 6 -2.7600 -15.9982 0.9404 28 8 -2.4598 -14.7511 0.5550 29 6 1.2861 -4.5968 -1.0929 30 1 2.0097 -5.0545 -1.7674 31 6 1.8195 -3.7545 0.0860 32 1 -0.4850 0.8401 0.0004 33 1 -0.3402 -1.7011 -1.2939 34 1 -0.7310 -2.7492 0.1044 35 1 0.3650 -6.5498 -2.5778 36 1 -1.3580 -6.1146 -2.4776 37 1 -0.6562 -7.5178 -0.1291 38 1 -2.1477 -9.7616 -0.1947 39 1 -0.4249 -10.1976 -0.2948 40 1 -0.8334 -11.3081 -2.4744 41 1 -2.5561 -10.8716 -2.3737 42 1 -1.8544 -12.2755 -0.0254 43 1 -3.0045 -16.1732 -2.3075 44 1 -3.2880 -17.7879 -0.1750 45 1 -2.7917 -16.3506 1.9608 46 1 1.4113 -4.1189 1.0287 47 1 2.9090 -3.7786 0.1080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755436353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:16 Heat of formation + Delta-G solvation = -24.484283 kcal Electronic energy + Delta-G solvation = -28118.677337 eV Core-core repulsion = 23882.935745 eV Total energy + Delta-G solvation = -4235.741593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.63176 -41.08888 -40.56777 -40.11629 -36.60871 -36.21507 -34.98385 -34.05243 -32.89051 -32.33960 -30.66021 -28.96050 -28.76244 -26.84831 -25.31088 -23.51119 -22.80574 -22.64905 -21.91936 -21.55037 -20.93572 -20.78841 -19.59920 -18.83613 -18.18762 -17.47176 -17.33009 -17.13905 -16.96558 -16.69633 -16.61958 -15.99007 -15.88753 -15.37920 -15.21784 -14.87866 -14.74860 -14.58800 -14.30473 -14.07245 -13.96690 -13.93208 -13.55249 -13.34844 -13.17786 -12.95928 -12.88769 -12.68668 -12.49439 -12.33074 -11.97601 -11.95046 -11.76028 -11.63293 -11.13410 -11.05134 -10.88353 -10.68682 -10.53664 -10.38954 -10.02537 -9.64514 -8.90089 -7.91779 -5.27850 0.01048 1.42961 1.46386 1.49509 1.55847 1.56011 1.63338 1.96446 2.05938 2.38931 2.47941 2.76123 3.26690 3.56453 3.64097 3.72227 3.78300 3.85239 3.94913 3.96765 4.06652 4.13951 4.22983 4.29347 4.43423 4.51503 4.57931 4.62047 4.67266 4.76217 4.83329 4.85771 4.92939 4.95273 4.97225 5.03682 5.17953 5.22952 5.35459 5.39443 5.45051 5.48791 5.54210 5.66932 5.81910 6.18668 6.36895 6.57247 6.95188 7.01640 7.26005 7.69111 8.47089 9.21697 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.036669 B = 0.001285 C = 0.001262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.414448 B =21791.094993 C =22183.547469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.190 3.810 11 C -0.181 4.181 12 H 0.110 0.890 13 C -0.105 4.105 14 H 0.114 0.886 15 C 0.162 3.838 16 N -0.711 5.711 17 C 0.513 3.487 18 O -0.589 6.589 19 C -0.137 4.137 20 C 0.137 3.863 21 N -0.703 5.703 22 C 0.599 3.401 23 O -0.565 6.565 24 C -0.108 4.108 25 C -0.129 4.129 26 C -0.237 4.237 27 C 0.015 3.985 28 O -0.167 6.167 29 C -0.161 4.161 30 H 0.122 0.878 31 C 0.149 3.851 32 H 0.250 0.750 33 H 0.050 0.950 34 H 0.004 0.996 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.422 0.578 43 H 0.154 0.846 44 H 0.181 0.819 45 H 0.257 0.743 46 H 0.031 0.969 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 -33.944 6.239 34.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.064 3.936 11 C -0.201 4.201 12 H 0.128 0.872 13 C -0.124 4.124 14 H 0.132 0.868 15 C 0.038 3.962 16 N -0.364 5.364 17 C 0.301 3.699 18 O -0.470 6.470 19 C -0.177 4.177 20 C 0.013 3.987 21 N -0.355 5.355 22 C 0.386 3.614 23 O -0.446 6.446 24 C -0.160 4.160 25 C -0.149 4.149 26 C -0.256 4.256 27 C -0.055 4.055 28 O -0.062 6.062 29 C -0.180 4.180 30 H 0.140 0.860 31 C 0.024 3.976 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.260 0.740 43 H 0.172 0.828 44 H 0.198 0.802 45 H 0.272 0.728 46 H 0.049 0.951 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.724 -33.414 4.758 34.233 hybrid contribution 0.242 1.220 0.348 1.291 sum -5.482 -32.195 5.106 33.055 Atomic orbital electron populations 1.70083 1.06499 1.25789 1.57061 1.25712 0.96464 1.01216 1.02038 0.85163 0.77254 0.78642 0.78331 1.20456 1.21959 1.19930 1.19354 0.91366 0.83786 1.42790 0.90213 1.45482 1.13941 1.01254 1.73850 1.20761 0.86045 0.93640 0.93130 1.23912 1.04867 0.91571 0.99769 0.87229 1.22411 0.97754 0.91838 1.00372 0.86834 1.20641 1.00788 0.82436 0.92373 1.45859 1.70043 1.08827 1.11637 1.20915 0.75563 0.85277 0.88171 1.90753 1.53494 1.85890 1.16844 1.21748 1.07443 0.89930 0.98587 1.20951 1.01484 0.82992 0.93303 1.45672 1.69316 1.08734 1.11752 1.16783 0.76668 0.81923 0.85993 1.90893 1.54501 1.84817 1.14355 1.21714 1.15756 0.96967 0.81585 1.22270 0.98973 0.91774 1.01923 1.22225 1.09269 1.03021 0.91097 1.25399 0.97846 0.79916 1.02296 1.84047 1.68290 1.32917 1.20955 1.23910 0.90609 1.02264 1.01263 0.86015 1.21302 0.97663 0.84215 0.94450 0.94134 0.93144 0.97823 0.91707 0.91599 0.74307 0.84663 0.84585 0.92211 0.92259 0.74015 0.82781 0.80191 0.72773 0.95128 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.53 10.87 21.65 0.24 -56.30 16 2 C -0.06 -3.41 5.40 84.86 0.46 -2.95 16 3 Si 0.98 45.16 29.56 68.60 2.03 47.19 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.24 -13.62 10.35 84.03 0.87 -12.75 16 8 H 0.08 4.24 7.84 -2.91 -0.02 4.22 16 9 N -0.62 -31.60 3.38 -688.51 -2.32 -33.92 16 10 C 0.19 9.15 5.69 86.56 0.49 9.64 16 11 C -0.18 -6.52 6.85 -9.93 -0.07 -6.59 16 12 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 13 C -0.10 -2.78 5.40 -10.79 -0.06 -2.83 16 14 H 0.11 2.85 8.04 -2.39 -0.02 2.83 16 15 C 0.16 3.71 5.95 86.38 0.51 4.22 16 16 N -0.71 -11.96 5.56 -463.07 -2.57 -14.53 16 17 C 0.51 9.80 7.83 87.66 0.69 10.49 16 18 O -0.59 -17.53 15.98 -3.02 -0.05 -17.58 16 19 C -0.14 -1.30 5.81 29.85 0.17 -1.12 16 20 C 0.14 2.27 4.96 86.38 0.43 2.70 16 21 N -0.70 -9.65 5.55 -467.10 -2.59 -12.25 16 22 C 0.60 12.24 7.79 86.44 0.67 12.92 16 23 O -0.56 -16.52 16.86 -4.32 -0.07 -16.59 16 24 C -0.11 -1.76 7.13 24.07 0.17 -1.59 16 25 C -0.13 -1.90 10.62 22.39 0.24 -1.66 16 26 C -0.24 -1.88 10.88 22.07 0.24 -1.64 16 27 C 0.01 0.07 12.08 67.10 0.81 0.88 16 28 O -0.17 -1.79 10.40 -5.04 -0.05 -1.84 16 29 C -0.16 -5.12 6.74 -9.93 -0.07 -5.19 16 30 H 0.12 3.48 8.12 -2.39 -0.02 3.46 16 31 C 0.15 5.84 7.04 86.54 0.61 6.45 16 32 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 33 H 0.05 2.80 6.51 -2.39 -0.02 2.78 16 34 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.06 1.60 7.94 -2.39 -0.02 1.58 16 36 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.42 4.38 8.40 -92.71 -0.78 3.60 16 38 H 0.14 0.49 8.14 -2.39 -0.02 0.48 16 39 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 41 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.42 2.84 8.23 -92.71 -0.76 2.08 16 43 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 45 H 0.26 -1.29 8.06 -2.91 -0.02 -1.32 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -83.14 400.75 0.24 -82.91 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -0.53 Total: 11.93 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.17 Total: 10.97 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -7.25 Total: -117.00 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.17 Total: -36.01 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -83.14 0.24 -82.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755436353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.421 kcal (2) G-P(sol) polarization free energy of solvation -83.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds