Wall clock time and date at job start Wed Apr 1 2020 04:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 119.99785 * 2 1 4 4 H 1.48503 * 109.47324 * 272.94905 * 3 2 1 5 5 H 1.48503 * 109.47474 * 32.94848 * 3 2 1 6 6 H 1.48498 * 109.47338 * 152.94657 * 3 2 1 7 7 C 1.38808 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00124 * 34.99659 * 7 2 1 9 9 N 1.36937 * 119.99878 * 215.00136 * 7 2 1 10 10 C 1.46965 * 120.59162 * 210.90859 * 9 7 2 11 11 C 1.53373 * 108.63622 * 235.24898 * 10 9 7 12 12 N 1.46975 * 108.63417 * 310.57910 * 11 10 9 13 13 C 1.34780 * 120.59146 * 235.20521 * 12 11 10 14 14 O 1.21507 * 119.99976 * 5.31557 * 13 12 11 15 15 C 1.48162 * 119.99457 * 185.31414 * 13 12 11 16 16 C 1.39966 * 120.88782 * 213.16528 * 15 13 12 17 17 C 1.37976 * 119.13393 * 180.25305 * 16 15 13 18 18 N 1.31916 * 120.97608 * 0.02774 * 17 16 15 19 19 C 1.32164 * 121.96989 * 359.97438 * 18 17 16 20 20 O 1.35687 * 119.62336 * 179.97438 * 19 18 17 21 21 C 1.42903 * 116.99675 * 359.97438 * 20 19 18 22 22 H 1.08996 * 110.75736 * 32.00938 * 21 20 19 23 23 C 1.55303 * 110.84958 * 155.71363 * 21 20 19 24 24 C 1.54945 * 100.94354 * 152.31734 * 23 21 20 25 25 O 1.43636 * 105.13672 * 323.55373 * 24 23 21 26 26 C 1.43238 * 109.97145 * 24.42891 * 25 24 23 27 27 C 1.38901 * 120.75493 * 359.97438 * 19 18 17 28 28 C 1.46959 * 118.81238 * 55.47612 * 12 11 10 29 29 C 1.46968 * 120.59642 * 30.93472 * 9 7 2 30 30 H 0.96992 * 120.00036 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.60673 * 115.50568 * 10 9 7 32 32 H 1.08993 * 109.61381 * 354.99687 * 10 9 7 33 33 H 1.09001 * 109.61249 * 190.83729 * 11 10 9 34 34 H 1.08997 * 109.75214 * 70.40320 * 11 10 9 35 35 H 1.08000 * 120.43572 * 0.27948 * 16 15 13 36 36 H 1.08004 * 119.51166 * 180.02562 * 17 16 15 37 37 H 1.09003 * 111.12250 * 270.23897 * 23 21 20 38 38 H 1.09001 * 111.12429 * 34.39645 * 23 21 20 39 39 H 1.09004 * 110.30716 * 204.63454 * 24 23 21 40 40 H 1.09000 * 110.30458 * 82.47089 * 24 23 21 41 41 H 1.09001 * 109.82519 * 238.76934 * 26 25 24 42 42 H 1.09003 * 109.90558 * 117.84467 * 26 25 24 43 43 H 1.08005 * 120.52451 * 179.97438 * 27 19 18 44 44 H 1.09006 * 109.60790 * 64.26765 * 28 12 11 45 45 H 1.08998 * 109.61302 * 184.77847 * 28 12 11 46 46 H 1.08996 * 109.60678 * 244.49639 * 29 9 7 47 47 H 1.09003 * 109.60247 * 4.83589 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4353 2.0825 -1.3982 5 1 1.4802 2.6339 0.7615 6 1 3.5775 1.4230 0.6368 7 6 2.0103 -1.2021 -0.0005 8 1 1.6168 -2.0527 -0.5374 9 7 3.1939 -1.3096 0.6797 10 6 4.2483 -2.2179 0.2072 11 6 4.6195 -3.1734 1.3480 12 7 4.8580 -2.3829 2.5639 13 6 6.0226 -2.4894 3.2338 14 8 6.9231 -3.1692 2.7826 15 6 6.2049 -1.7775 4.5203 16 6 7.4583 -1.2799 4.8950 17 6 7.5881 -0.6272 6.1036 18 7 6.5518 -0.4686 6.9043 19 6 5.3502 -0.9217 6.5918 20 8 4.3176 -0.7326 7.4514 21 6 4.6047 -0.0396 8.6677 22 1 5.3946 0.6960 8.5160 23 6 3.3241 0.6278 9.2392 24 6 3.6526 0.6462 10.7533 25 8 4.3659 -0.5764 10.9972 26 6 4.9852 -1.0310 9.7883 27 6 5.1324 -1.5894 5.3934 28 6 3.8015 -1.4788 3.0395 29 6 3.4325 -0.5191 1.8955 30 1 -0.4850 0.8400 -0.0004 31 1 5.1248 -1.6399 -0.0857 32 1 3.8830 -2.7904 -0.6453 33 1 5.5237 -3.7227 1.0856 34 1 3.8031 -3.8744 1.5217 35 1 8.3127 -1.4048 4.2462 36 1 8.5524 -0.2405 6.3986 37 1 3.2018 1.6392 8.8514 38 1 2.4412 0.0218 9.0360 39 1 2.7339 0.6717 11.3394 40 1 4.2797 1.5046 10.9939 41 1 4.6219 -2.0280 9.5390 42 1 6.0681 -1.0522 9.9113 43 1 4.1490 -1.9585 5.1419 44 1 2.9261 -2.0599 3.3299 45 1 4.1652 -0.9087 3.8943 46 1 4.2508 0.1797 1.7227 47 1 2.5291 0.0324 2.1562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273437540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:19 Heat of formation + Delta-G solvation = -18.222614 kcal Electronic energy + Delta-G solvation = -30980.892244 eV Core-core repulsion = 26745.422177 eV Total energy + Delta-G solvation = -4235.470066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.29200 -40.15774 -39.27813 -37.68175 -37.07505 -34.28316 -33.05412 -32.19071 -31.55141 -30.77929 -30.37851 -29.14950 -27.50433 -25.15057 -24.12385 -23.48922 -23.12996 -22.74408 -22.00807 -20.88571 -19.61082 -18.43505 -17.50546 -17.31338 -16.79080 -16.43055 -16.20331 -15.99247 -15.68717 -15.54640 -15.16037 -14.96580 -14.67014 -14.45004 -14.29156 -13.80270 -13.69768 -13.59811 -13.49040 -13.19144 -12.98033 -12.80673 -12.64411 -12.28969 -12.18363 -11.94442 -11.83834 -11.28372 -11.17693 -11.14373 -10.88619 -10.59698 -10.47029 -10.33327 -10.22125 -10.07763 -9.94214 -9.60768 -9.53900 -8.83552 -8.75347 -8.35224 -7.03920 -6.16941 -3.41671 0.54886 0.87188 2.47034 2.75993 3.05329 3.30026 3.42303 3.46621 3.47354 3.56311 3.89584 4.01690 4.30662 4.43117 4.45368 4.58519 4.60553 4.71986 4.74893 4.78903 4.84543 4.93191 5.15198 5.25443 5.30586 5.31940 5.34979 5.44065 5.47573 5.51430 5.52517 5.57972 5.68315 5.80576 5.86649 5.94677 6.00224 6.05488 6.14240 6.42982 6.51197 6.52006 6.66690 6.76622 6.89855 7.48449 7.52277 7.83159 8.14938 8.19881 8.81261 9.58569 9.99693 10.97749 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010766 B = 0.003183 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.138962 B = 8795.631659 C =10500.704911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.043 3.957 3 Si 0.838 3.162 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.258 1.258 7 C -0.278 4.278 8 H 0.082 0.918 9 N -0.599 5.599 10 C 0.131 3.869 11 C 0.095 3.905 12 N -0.585 5.585 13 C 0.553 3.447 14 O -0.540 6.540 15 C -0.041 4.041 16 C -0.157 4.157 17 C 0.137 3.863 18 N -0.530 5.530 19 C 0.315 3.685 20 O -0.287 6.287 21 C 0.060 3.940 22 H 0.106 0.894 23 C -0.155 4.155 24 C 0.053 3.947 25 O -0.378 6.378 26 C 0.036 3.964 27 C -0.161 4.161 28 C 0.065 3.935 29 C 0.131 3.869 30 H 0.264 0.736 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.159 0.841 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.033 0.967 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.245 0.510 18.145 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.159 4.159 3 Si 0.665 3.335 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.405 4.405 8 H 0.099 0.901 9 N -0.323 5.323 10 C 0.005 3.995 11 C -0.028 4.028 12 N -0.316 5.316 13 C 0.340 3.660 14 O -0.418 6.418 15 C -0.051 4.051 16 C -0.178 4.178 17 C -0.018 4.018 18 N -0.254 5.254 19 C 0.137 3.863 20 O -0.194 6.194 21 C 0.003 3.997 22 H 0.124 0.876 23 C -0.193 4.193 24 C -0.023 4.023 25 O -0.298 6.298 26 C -0.041 4.041 27 C -0.182 4.182 28 C -0.059 4.059 29 C 0.005 3.995 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.166 0.834 36 H 0.184 0.816 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.176 0.824 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.051 0.949 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.323 0.472 18.817 21.966 hybrid contribution 0.312 0.939 -1.047 1.441 sum 11.635 1.411 17.770 21.287 Atomic orbital electron populations 1.70075 1.06216 1.27044 1.48503 1.25325 0.94828 0.97495 0.98261 0.87551 0.81897 0.85812 0.78287 1.21729 1.22028 1.18252 1.18747 0.94721 0.96381 1.30643 0.90081 1.44279 1.14987 1.48250 1.24734 1.21375 0.91646 0.92170 0.94353 1.22312 1.01524 0.94244 0.84735 1.47957 1.14918 1.42120 1.26645 1.18118 0.82594 0.81553 0.83689 1.90753 1.40823 1.41837 1.68409 1.20211 0.93626 0.96611 0.94698 1.22087 0.97443 0.99739 0.98518 1.22371 0.96299 0.93897 0.89262 1.67098 0.99494 1.22933 1.35893 1.19598 0.85985 0.92397 0.88361 1.86340 1.31444 1.72549 1.29046 1.23911 0.99015 0.94386 0.82397 0.87573 1.23394 0.97971 1.02572 0.95365 1.23348 0.96859 0.87606 0.94501 1.88443 1.69389 1.40564 1.31381 1.23549 0.98408 0.98261 0.83861 1.21561 1.01191 1.02834 0.92647 1.23239 0.90115 0.93331 0.99177 1.21820 0.99704 0.92296 0.85714 0.92606 0.95476 0.90453 0.89437 0.91010 0.83441 0.81575 0.88719 0.88745 0.88890 0.91611 0.90379 0.90322 0.82352 0.90314 0.89297 0.94909 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.42 13.97 55.49 0.78 -24.65 16 2 C 0.04 1.17 4.82 -17.43 -0.08 1.09 16 3 Si 0.84 20.38 26.65 -169.99 -4.53 15.85 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -5.97 4.91 56.52 0.28 -5.69 16 7 C -0.28 -7.29 9.82 -15.06 -0.15 -7.44 16 8 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 9 N -0.60 -13.38 2.64 -171.76 -0.45 -13.84 16 10 C 0.13 2.48 6.67 -3.60 -0.02 2.45 16 11 C 0.10 1.58 6.60 -3.59 -0.02 1.56 16 12 N -0.59 -9.65 2.94 -173.20 -0.51 -10.16 16 13 C 0.55 8.94 7.45 -12.18 -0.09 8.85 16 14 O -0.54 -9.95 16.27 5.36 0.09 -9.86 16 15 C -0.04 -0.55 5.40 -104.68 -0.56 -1.11 16 16 C -0.16 -1.78 9.71 -39.03 -0.38 -2.16 16 17 C 0.14 1.34 11.17 -17.61 -0.20 1.14 16 18 N -0.53 -5.96 8.68 -13.38 -0.12 -6.08 16 19 C 0.32 3.83 7.48 -17.16 -0.13 3.70 16 20 O -0.29 -3.33 9.85 -18.76 -0.18 -3.51 16 21 C 0.06 0.57 3.19 -24.79 -0.08 0.49 16 22 H 0.11 1.00 7.14 -51.93 -0.37 0.63 16 23 C -0.16 -1.19 6.89 -24.48 -0.17 -1.36 16 24 C 0.05 0.39 7.78 38.18 0.30 0.68 16 25 O -0.38 -3.90 11.36 -35.23 -0.40 -4.30 16 26 C 0.04 0.35 7.58 37.88 0.29 0.64 16 27 C -0.16 -2.04 7.42 -38.84 -0.29 -2.32 16 28 C 0.07 1.06 5.03 -3.37 -0.02 1.04 16 29 C 0.13 2.65 4.58 -3.36 -0.02 2.64 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.41 7.93 -51.93 -0.41 1.00 16 33 H 0.09 1.40 6.99 -51.93 -0.36 1.04 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.15 1.53 8.03 -52.49 -0.42 1.11 16 36 H 0.17 1.04 8.06 -52.48 -0.42 0.61 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.16 1.93 5.89 -52.48 -0.31 1.62 16 44 H 0.08 1.27 8.11 -51.93 -0.42 0.84 16 45 H 0.09 1.27 4.16 -51.93 -0.22 1.05 16 46 H 0.03 0.68 6.68 -51.93 -0.35 0.34 16 47 H 0.08 1.71 5.94 -51.93 -0.31 1.40 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -31.89 373.41 -7.98 -39.87 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.65 Total: 1.18 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -1.62 Total: 9.88 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.30 Total: -54.72 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.50 Total: -17.68 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.53 Total: 15.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.89 -7.98 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273437540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.645 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds