Wall clock time and date at job start Wed Apr 1 2020 04:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 119.99785 * 2 1 4 4 H 1.48503 * 109.47324 * 272.94905 * 3 2 1 5 5 H 1.48503 * 109.47474 * 32.94848 * 3 2 1 6 6 H 1.48498 * 109.47338 * 152.94657 * 3 2 1 7 7 C 1.38808 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00124 * 34.99659 * 7 2 1 9 9 N 1.36937 * 119.99878 * 215.00136 * 7 2 1 10 10 C 1.46965 * 120.59162 * 210.90859 * 9 7 2 11 11 C 1.53373 * 108.63622 * 235.24898 * 10 9 7 12 12 N 1.46975 * 108.63417 * 310.57910 * 11 10 9 13 13 C 1.34780 * 120.59146 * 235.20521 * 12 11 10 14 14 O 1.21507 * 119.99976 * 5.31557 * 13 12 11 15 15 C 1.48162 * 119.99457 * 185.31414 * 13 12 11 16 16 C 1.39966 * 120.88782 * 213.16528 * 15 13 12 17 17 C 1.37976 * 119.13393 * 180.25305 * 16 15 13 18 18 N 1.31916 * 120.97608 * 0.02774 * 17 16 15 19 19 C 1.32164 * 121.96989 * 359.97438 * 18 17 16 20 20 O 1.35687 * 119.62336 * 179.97438 * 19 18 17 21 21 C 1.42903 * 116.99675 * 359.97438 * 20 19 18 22 22 H 1.08996 * 110.75736 * 32.00938 * 21 20 19 23 23 C 1.55303 * 110.84958 * 155.71363 * 21 20 19 24 24 C 1.54945 * 100.94354 * 152.31734 * 23 21 20 25 25 O 1.43636 * 105.13672 * 323.55373 * 24 23 21 26 26 C 1.43238 * 109.97145 * 24.42891 * 25 24 23 27 27 C 1.38901 * 120.75493 * 359.97438 * 19 18 17 28 28 C 1.46959 * 118.81238 * 55.47612 * 12 11 10 29 29 C 1.46968 * 120.59642 * 30.93472 * 9 7 2 30 30 H 0.96992 * 120.00036 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.60673 * 115.50568 * 10 9 7 32 32 H 1.08993 * 109.61381 * 354.99687 * 10 9 7 33 33 H 1.09001 * 109.61249 * 190.83729 * 11 10 9 34 34 H 1.08997 * 109.75214 * 70.40320 * 11 10 9 35 35 H 1.08000 * 120.43572 * 0.27948 * 16 15 13 36 36 H 1.08004 * 119.51166 * 180.02562 * 17 16 15 37 37 H 1.09003 * 111.12250 * 270.23897 * 23 21 20 38 38 H 1.09001 * 111.12429 * 34.39645 * 23 21 20 39 39 H 1.09004 * 110.30716 * 204.63454 * 24 23 21 40 40 H 1.09000 * 110.30458 * 82.47089 * 24 23 21 41 41 H 1.09001 * 109.82519 * 238.76934 * 26 25 24 42 42 H 1.09003 * 109.90558 * 117.84467 * 26 25 24 43 43 H 1.08005 * 120.52451 * 179.97438 * 27 19 18 44 44 H 1.09006 * 109.60790 * 64.26765 * 28 12 11 45 45 H 1.08998 * 109.61302 * 184.77847 * 28 12 11 46 46 H 1.08996 * 109.60678 * 244.49639 * 29 9 7 47 47 H 1.09003 * 109.60247 * 4.83589 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4353 2.0825 -1.3982 5 1 1.4802 2.6339 0.7615 6 1 3.5775 1.4230 0.6368 7 6 2.0103 -1.2021 -0.0005 8 1 1.6168 -2.0527 -0.5374 9 7 3.1939 -1.3096 0.6797 10 6 4.2483 -2.2179 0.2072 11 6 4.6195 -3.1734 1.3480 12 7 4.8580 -2.3829 2.5639 13 6 6.0226 -2.4894 3.2338 14 8 6.9231 -3.1692 2.7826 15 6 6.2049 -1.7775 4.5203 16 6 7.4583 -1.2799 4.8950 17 6 7.5881 -0.6272 6.1036 18 7 6.5518 -0.4686 6.9043 19 6 5.3502 -0.9217 6.5918 20 8 4.3176 -0.7326 7.4514 21 6 4.6047 -0.0396 8.6677 22 1 5.3946 0.6960 8.5160 23 6 3.3241 0.6278 9.2392 24 6 3.6526 0.6462 10.7533 25 8 4.3659 -0.5764 10.9972 26 6 4.9852 -1.0310 9.7883 27 6 5.1324 -1.5894 5.3934 28 6 3.8015 -1.4788 3.0395 29 6 3.4325 -0.5191 1.8955 30 1 -0.4850 0.8400 -0.0004 31 1 5.1248 -1.6399 -0.0857 32 1 3.8830 -2.7904 -0.6453 33 1 5.5237 -3.7227 1.0856 34 1 3.8031 -3.8744 1.5217 35 1 8.3127 -1.4048 4.2462 36 1 8.5524 -0.2405 6.3986 37 1 3.2018 1.6392 8.8514 38 1 2.4412 0.0218 9.0360 39 1 2.7339 0.6717 11.3394 40 1 4.2797 1.5046 10.9939 41 1 4.6219 -2.0280 9.5390 42 1 6.0681 -1.0522 9.9113 43 1 4.1490 -1.9585 5.1419 44 1 2.9261 -2.0599 3.3299 45 1 4.1652 -0.9087 3.8943 46 1 4.2508 0.1797 1.7227 47 1 2.5291 0.0324 2.1562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273437540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:18 Heat of formation + Delta-G solvation = -40.691138 kcal Electronic energy + Delta-G solvation = -30981.866552 eV Core-core repulsion = 26745.422177 eV Total energy + Delta-G solvation = -4236.444375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.24434 -41.17629 -40.20636 -38.76710 -38.34018 -35.84997 -34.28901 -33.32983 -32.91828 -32.10222 -31.28460 -29.86489 -29.08968 -26.42048 -25.27351 -24.91557 -24.29872 -23.58513 -22.91557 -22.11509 -20.85329 -19.64039 -18.65470 -18.42600 -17.84919 -17.62278 -17.17470 -16.95871 -16.84239 -16.73970 -16.40348 -16.10044 -16.02979 -15.73982 -15.46761 -15.09014 -14.83301 -14.74133 -14.52835 -14.32417 -14.18293 -14.14626 -13.91873 -13.49934 -13.38743 -13.04960 -12.79625 -12.59319 -12.55434 -12.34339 -12.14527 -11.95910 -11.93354 -11.87212 -11.49384 -11.43038 -11.01572 -10.69653 -10.65812 -10.59803 -9.97985 -9.62900 -8.86457 -8.26027 -5.47260 -0.42225 0.00611 1.33731 1.45167 1.50695 1.52695 1.65311 1.87337 2.42628 2.61099 2.84311 2.91568 3.08465 3.23841 3.34280 3.35084 3.72325 3.78007 3.83067 3.94609 3.96249 4.05082 4.07802 4.14879 4.24213 4.28187 4.35237 4.46858 4.52814 4.54280 4.61897 4.64362 4.69915 4.70926 4.78096 4.83780 4.85528 4.94601 4.96835 4.97669 5.13730 5.25838 5.38210 5.84881 5.86788 6.07259 6.10527 6.24244 6.63619 6.86704 6.88851 7.58379 8.02862 8.92423 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010766 B = 0.003183 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.138962 B = 8795.631659 C =10500.704911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.005 4.005 3 Si 0.898 3.102 4 H -0.301 1.301 5 H -0.294 1.294 6 H -0.239 1.239 7 C -0.266 4.266 8 H 0.052 0.948 9 N -0.612 5.612 10 C 0.131 3.869 11 C 0.104 3.896 12 N -0.591 5.591 13 C 0.557 3.443 14 O -0.564 6.564 15 C -0.056 4.056 16 C -0.157 4.157 17 C 0.150 3.850 18 N -0.531 5.531 19 C 0.311 3.689 20 O -0.297 6.297 21 C 0.057 3.943 22 H 0.110 0.890 23 C -0.152 4.152 24 C 0.050 3.950 25 O -0.399 6.399 26 C 0.039 3.961 27 C -0.170 4.170 28 C 0.080 3.920 29 C 0.127 3.873 30 H 0.264 0.736 31 H 0.030 0.970 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.158 0.842 36 H 0.207 0.793 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.158 0.842 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.033 0.967 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.437 1.622 20.063 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.725 3.275 4 H -0.229 1.229 5 H -0.221 1.221 6 H -0.163 1.163 7 C -0.395 4.395 8 H 0.069 0.931 9 N -0.336 5.336 10 C 0.005 3.995 11 C -0.020 4.020 12 N -0.321 5.321 13 C 0.346 3.654 14 O -0.444 6.444 15 C -0.067 4.067 16 C -0.177 4.177 17 C -0.005 4.005 18 N -0.255 5.255 19 C 0.132 3.868 20 O -0.204 6.204 21 C 0.000 4.000 22 H 0.128 0.872 23 C -0.189 4.189 24 C -0.025 4.025 25 O -0.319 6.319 26 C -0.038 4.038 27 C -0.191 4.191 28 C -0.043 4.043 29 C 0.001 3.999 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.175 0.825 36 H 0.224 0.776 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.176 0.824 44 H 0.098 0.902 45 H 0.132 0.868 46 H 0.051 0.949 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.548 1.583 20.764 24.843 hybrid contribution -0.308 0.523 -1.592 1.704 sum 13.240 2.105 19.172 23.394 Atomic orbital electron populations 1.70154 1.07663 1.27606 1.51396 1.25790 0.95239 1.00235 0.99121 0.86593 0.81465 0.81943 0.77499 1.22917 1.22088 1.16261 1.18670 0.95721 0.95335 1.29730 0.93072 1.44385 1.14735 1.48969 1.25489 1.21466 0.90615 0.91975 0.95451 1.22147 1.01994 0.93664 0.84174 1.47992 1.15260 1.42182 1.26701 1.18459 0.81720 0.80999 0.84238 1.90736 1.41455 1.42905 1.69349 1.20067 0.94990 0.97871 0.93784 1.22304 0.96805 0.99378 0.99259 1.23006 0.97285 0.92198 0.88038 1.67216 0.99467 1.22713 1.36078 1.19650 0.86448 0.92349 0.88321 1.86329 1.31608 1.72815 1.29637 1.24064 1.00113 0.94250 0.81559 0.87210 1.23425 0.96840 1.03100 0.95561 1.23557 0.97586 0.87032 0.94370 1.88417 1.69814 1.41915 1.31746 1.23491 0.98507 0.97876 0.83931 1.21487 1.01011 1.03506 0.93111 1.23069 0.90373 0.92738 0.98128 1.21837 0.98956 0.92953 0.86129 0.92704 0.95207 0.90316 0.88507 0.90739 0.82466 0.77608 0.87180 0.89352 0.87478 0.90041 0.91400 0.90019 0.82449 0.90190 0.86809 0.94881 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 13.97 21.65 0.30 -54.54 16 2 C -0.01 -0.29 4.82 84.86 0.41 0.12 16 3 Si 0.90 42.49 26.65 68.60 1.83 44.32 16 4 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.24 -10.43 4.91 99.48 0.49 -9.94 16 7 C -0.27 -14.17 9.82 84.03 0.83 -13.35 16 8 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 9 N -0.61 -27.08 2.64 -697.34 -1.84 -28.92 16 10 C 0.13 4.84 6.67 86.42 0.58 5.42 16 11 C 0.10 3.33 6.60 86.41 0.57 3.90 16 12 N -0.59 -18.62 2.94 -820.18 -2.41 -21.03 16 13 C 0.56 17.09 7.45 86.88 0.65 17.73 16 14 O -0.56 -19.96 16.27 -3.74 -0.06 -20.02 16 15 C -0.06 -1.41 5.40 -19.90 -0.11 -1.52 16 16 C -0.16 -3.11 9.71 22.63 0.22 -2.89 16 17 C 0.15 2.38 11.17 84.62 0.94 3.32 16 18 N -0.53 -10.37 8.68 -309.14 -2.68 -13.06 16 19 C 0.31 6.90 7.48 84.80 0.63 7.54 16 20 O -0.30 -6.43 9.85 -90.06 -0.89 -7.31 16 21 C 0.06 0.98 3.19 31.85 0.10 1.08 16 22 H 0.11 1.81 7.14 -2.39 -0.02 1.79 16 23 C -0.15 -2.04 6.89 32.05 0.22 -1.82 16 24 C 0.05 0.63 7.78 72.65 0.56 1.19 16 25 O -0.40 -7.67 11.36 -148.98 -1.69 -9.36 16 26 C 0.04 0.71 7.58 72.45 0.55 1.26 16 27 C -0.17 -3.99 7.42 22.75 0.17 -3.82 16 28 C 0.08 2.50 5.03 86.57 0.44 2.93 16 29 C 0.13 4.99 4.58 86.56 0.40 5.39 16 30 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 2.86 7.93 -2.39 -0.02 2.84 16 33 H 0.10 2.97 6.99 -2.39 -0.02 2.95 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.16 2.80 8.03 -2.91 -0.02 2.77 16 36 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.16 3.63 5.89 -2.91 -0.02 3.61 16 44 H 0.08 2.49 8.11 -2.38 -0.02 2.47 16 45 H 0.11 3.02 4.16 -2.39 -0.01 3.01 16 46 H 0.03 1.31 6.68 -2.39 -0.02 1.29 16 47 H 0.06 2.70 5.94 -2.39 -0.01 2.68 16 Total: -1.00 -68.78 373.41 0.49 -68.29 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.78 Total: 15.14 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 7.16 Total: 26.49 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -6.63 Total: -117.55 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -2.64 Total: -36.69 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.83 Total: 44.32 kcal Total: -68.78 0.49 -68.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273437540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.595 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds