Wall clock time and date at job start Wed Apr 1 2020 04:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99928 * 2 1 4 4 H 1.48498 * 109.47192 * 90.00312 * 3 2 1 5 5 H 1.48504 * 109.46842 * 210.00260 * 3 2 1 6 6 H 1.48502 * 109.47282 * 330.00105 * 3 2 1 7 7 C 1.37878 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99919 * 201.85360 * 7 2 1 9 9 C 1.50695 * 120.00171 * 21.85170 * 7 2 1 10 10 H 1.08999 * 109.47135 * 305.52178 * 9 7 2 11 11 N 1.46498 * 109.47357 * 185.52498 * 9 7 2 12 12 C 1.34779 * 120.00313 * 154.99797 * 11 9 7 13 13 O 1.21588 * 119.99919 * 4.98288 * 12 11 9 14 14 N 1.34774 * 119.99753 * 184.98363 * 12 11 9 15 15 C 1.46929 * 120.62405 * 184.76244 * 14 12 11 16 16 C 1.52762 * 109.00558 * 233.58317 * 15 14 12 17 17 C 1.53050 * 109.38220 * 305.58694 * 16 15 14 18 18 N 1.46898 * 109.44662 * 181.25106 * 17 16 15 19 19 C 1.48230 * 110.99935 * 60.17780 * 18 17 16 20 20 C 1.51124 * 105.36153 * 144.89731 * 19 18 17 21 21 C 1.30956 * 109.45517 * 343.02030 * 20 19 18 22 22 C 1.48228 * 111.00004 * 173.81107 * 18 17 16 23 23 C 1.53044 * 109.53559 * 61.24143 * 17 16 15 24 24 C 1.46917 * 120.63504 * 5.03971 * 14 12 11 25 25 C 1.52994 * 109.47170 * 65.52216 * 9 7 2 26 26 F 1.39905 * 109.47090 * 54.64134 * 25 9 7 27 27 F 1.39903 * 109.47118 * 174.64241 * 25 9 7 28 28 F 1.39902 * 109.47519 * 294.64409 * 25 9 7 29 29 H 0.96996 * 120.00201 * 175.42427 * 1 2 3 30 30 H 0.97000 * 119.99938 * 335.00104 * 11 9 7 31 31 H 1.08998 * 109.58946 * 353.41735 * 15 14 12 32 32 H 1.09004 * 109.58771 * 113.84479 * 15 14 12 33 33 H 1.09000 * 109.56540 * 185.55301 * 16 15 14 34 34 H 1.08998 * 109.39152 * 65.51359 * 16 15 14 35 35 H 1.08998 * 109.45902 * 301.21860 * 17 16 15 36 36 H 1.09004 * 110.26590 * 263.86980 * 19 18 17 37 37 H 1.09000 * 110.26655 * 25.92088 * 19 18 17 38 38 H 1.07997 * 125.26587 * 163.00717 * 20 19 18 39 39 H 1.08001 * 125.27002 * 180.02562 * 21 20 19 40 40 H 1.09007 * 110.26698 * 334.07570 * 22 18 17 41 41 H 1.08999 * 110.26364 * 96.03634 * 22 18 17 42 42 H 1.08998 * 109.49536 * 178.67886 * 23 17 16 43 43 H 1.09004 * 109.52117 * 58.60519 * 23 17 16 44 44 H 1.09007 * 109.58870 * 246.15669 * 24 14 12 45 45 H 1.08999 * 109.58710 * 6.58059 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5466 1.4402 -0.7001 6 1 1.4465 2.6528 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0263 -1.2278 0.3476 9 6 1.3323 -2.4520 -0.4868 10 1 0.4021 -2.6021 0.0612 11 7 2.2194 -3.5967 -0.2655 12 6 1.7025 -4.8346 -0.1354 13 8 0.5103 -5.0152 -0.2916 14 7 2.5073 -5.8723 0.1679 15 6 1.9780 -7.2423 0.2109 16 6 2.3236 -7.8670 1.5614 17 6 3.8328 -7.7682 1.7955 18 7 4.1706 -8.3953 3.0802 19 6 3.7839 -9.8262 3.0908 20 6 4.8475 -10.5223 3.9081 21 6 5.8964 -9.7450 4.0117 22 6 5.6390 -8.4514 3.2742 23 6 4.2515 -6.2964 1.8209 24 6 3.9289 -5.6545 0.4678 25 6 1.0289 -2.3233 -1.9809 26 9 2.2052 -2.0095 -2.6702 27 9 0.5172 -3.5345 -2.4589 28 9 0.0870 -1.3082 -2.1798 29 1 -0.4850 -0.8373 -0.0670 30 1 3.1787 -3.4636 -0.2125 31 1 0.8954 -7.2199 0.0865 32 1 2.4275 -7.8329 -0.5875 33 1 2.0224 -8.9146 1.5668 34 1 1.7970 -7.3331 2.3524 35 1 4.3594 -8.2818 0.9911 36 1 2.8071 -9.9499 3.5585 37 1 3.7696 -10.2210 2.0749 38 1 4.7566 -11.5080 4.3399 39 1 6.8047 -9.9906 4.5418 40 1 6.1473 -8.4590 2.3099 41 1 5.9738 -7.6023 3.8701 42 1 5.3224 -6.2260 2.0109 43 1 3.7072 -5.7764 2.6093 44 1 4.5407 -6.1129 -0.3092 45 1 4.1331 -4.5848 0.5129 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:43 Heat of formation + Delta-G solvation = -138.781889 kcal Electronic energy + Delta-G solvation = -32223.545072 eV Core-core repulsion = 27440.990423 eV Total energy + Delta-G solvation = -4782.554649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.71919 -46.24647 -46.19711 -40.51720 -39.49400 -37.06674 -34.92311 -33.58613 -32.65264 -31.27142 -29.96450 -28.67216 -27.86313 -24.75253 -24.43716 -23.34242 -22.35655 -21.55663 -20.51570 -19.45659 -19.37610 -18.47503 -17.34625 -17.17179 -16.93247 -16.78248 -16.33509 -15.73704 -15.23920 -15.03530 -14.56264 -14.37558 -14.07760 -13.87638 -13.53400 -13.42048 -13.28571 -13.13272 -12.97628 -12.80334 -12.68885 -12.55182 -12.53288 -12.39724 -12.36200 -12.34575 -12.21627 -11.86836 -11.56632 -11.34376 -11.25186 -11.00028 -10.85133 -10.78327 -10.53949 -10.21488 -9.82132 -9.61092 -9.49435 -8.62937 -8.58893 -8.41077 -8.22727 -6.74622 -4.49496 1.80680 2.94603 3.30773 3.38784 3.52149 3.54177 3.69880 4.17742 4.28465 4.30343 4.33620 4.36597 4.62609 4.67381 4.93965 4.95448 5.02844 5.09001 5.13609 5.18017 5.23052 5.27398 5.31488 5.42261 5.48499 5.52244 5.61380 5.61787 5.64948 5.70659 5.74840 5.91760 5.99251 6.02804 6.18703 6.24793 6.53427 6.57601 6.71930 6.74579 7.07011 7.20137 7.49565 8.09717 8.41764 8.50722 9.06966 9.22522 10.62613 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.002791 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.286202 B =10028.397406 C =10900.933005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.040 3.960 3 Si 1.073 2.927 4 H -0.284 1.284 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.639 4.639 8 H 0.072 0.928 9 C 0.252 3.748 10 H 0.077 0.923 11 N -0.720 5.720 12 C 0.704 3.296 13 O -0.583 6.583 14 N -0.633 5.633 15 C 0.133 3.867 16 C -0.127 4.127 17 C 0.078 3.922 18 N -0.499 5.499 19 C 0.052 3.948 20 C -0.170 4.170 21 C -0.170 4.170 22 C 0.052 3.948 23 C -0.124 4.124 24 C 0.113 3.887 25 C 0.414 3.586 26 F -0.196 7.196 27 F -0.203 7.203 28 F -0.179 7.179 29 H 0.279 0.721 30 H 0.396 0.604 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.003 -17.563 4.701 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.172 4.172 3 Si 0.899 3.101 4 H -0.210 1.210 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.675 4.675 8 H 0.090 0.910 9 C 0.145 3.855 10 H 0.095 0.905 11 N -0.375 5.375 12 C 0.405 3.595 13 O -0.460 6.460 14 N -0.372 5.372 15 C 0.009 3.991 16 C -0.166 4.166 17 C -0.031 4.031 18 N -0.223 5.223 19 C -0.076 4.076 20 C -0.188 4.188 21 C -0.188 4.188 22 C -0.076 4.076 23 C -0.163 4.163 24 C -0.011 4.011 25 C 0.358 3.642 26 F -0.178 7.178 27 F -0.185 7.185 28 F -0.161 7.161 29 H 0.091 0.909 30 H 0.232 0.768 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.563 -15.695 5.022 19.574 hybrid contribution 1.151 -2.168 -0.977 2.642 sum 11.714 -17.863 4.045 21.741 Atomic orbital electron populations 1.70713 1.07181 1.32478 1.38214 1.25984 0.95957 1.02976 0.92313 0.83505 0.75150 0.74355 0.77097 1.21041 1.20768 1.20446 1.21652 1.02344 0.91604 1.51870 0.90970 1.19588 0.94387 0.85981 0.85539 0.90536 1.45251 1.10581 1.05149 1.76481 1.15970 0.85004 0.80635 0.77858 1.90901 1.13531 1.83525 1.58042 1.47211 1.09049 1.06350 1.74604 1.21263 1.01362 0.80773 0.95672 1.21940 0.94730 1.01240 0.98674 1.21892 0.96607 0.95326 0.89268 1.65696 1.11334 1.13411 1.31832 1.22073 0.99125 0.87650 0.98703 1.23595 0.95718 0.99803 0.99723 1.23589 0.99183 0.95931 1.00095 1.22084 0.89152 0.97128 0.99216 1.21939 1.01598 0.94593 0.98185 1.21580 0.82098 1.01367 0.96044 1.23090 0.73486 0.72467 0.95203 1.93019 1.49109 1.93046 1.82610 1.93103 1.87740 1.46724 1.90954 1.93139 1.65919 1.60960 1.96078 0.90895 0.76828 0.88422 0.92328 0.90919 0.90310 0.93659 0.89498 0.92456 0.84848 0.84844 0.92498 0.89477 0.90861 0.90146 0.91737 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.42 12.47 55.43 0.69 -23.73 16 2 C 0.04 1.08 4.69 -17.82 -0.08 0.99 16 3 Si 1.07 23.60 29.96 -169.99 -5.09 18.51 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.64 -16.46 8.20 -34.44 -0.28 -16.75 16 8 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.25 6.27 1.92 -69.09 -0.13 6.14 16 10 H 0.08 2.12 6.66 -51.93 -0.35 1.78 16 11 N -0.72 -15.00 4.89 -59.82 -0.29 -15.29 16 12 C 0.70 14.30 7.80 -86.92 -0.68 13.62 16 13 O -0.58 -14.01 14.16 5.29 0.07 -13.93 16 14 N -0.63 -9.64 2.98 -178.77 -0.53 -10.17 16 15 C 0.13 1.72 6.41 -3.93 -0.03 1.70 16 16 C -0.13 -1.37 5.27 -26.83 -0.14 -1.51 16 17 C 0.08 0.76 1.47 -67.67 -0.10 0.66 16 18 N -0.50 -4.86 5.38 -226.64 -1.22 -6.07 16 19 C 0.05 0.43 5.36 -4.03 -0.02 0.41 16 20 C -0.17 -1.26 10.95 -35.81 -0.39 -1.65 16 21 C -0.17 -1.26 10.94 -35.81 -0.39 -1.65 16 22 C 0.05 0.43 5.55 -4.04 -0.02 0.41 16 23 C -0.12 -1.29 5.38 -26.61 -0.14 -1.43 16 24 C 0.11 1.33 6.35 -3.72 -0.02 1.30 16 25 C 0.41 10.47 2.82 37.15 0.10 10.57 16 26 F -0.20 -4.78 16.87 2.25 0.04 -4.74 16 27 F -0.20 -5.11 15.34 2.25 0.03 -5.08 16 28 F -0.18 -4.83 14.24 2.25 0.03 -4.80 16 29 H 0.28 8.12 6.12 -40.82 -0.25 7.87 16 30 H 0.40 7.19 6.11 -40.82 -0.25 6.94 16 31 H 0.10 1.46 6.99 -51.93 -0.36 1.10 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.66 7.02 -51.93 -0.36 0.29 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.43 7.88 -51.93 -0.41 0.02 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.45 7.54 -51.93 -0.39 0.06 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.63 7.35 -51.93 -0.38 0.25 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 45 H 0.09 1.02 5.73 -51.93 -0.30 0.72 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -31.42 362.54 -9.17 -40.59 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.04 Total: 6.44 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: -2.33 Total: 12.82 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -1.35 Total: -55.27 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.07 Total: -13.93 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 0.10 Total: -14.62 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.09 Total: 18.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.42 -9.17 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.193 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds