Wall clock time and date at job start Wed Apr 1 2020 04:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48502 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47191 * 299.99695 * 3 2 1 6 6 H 1.48504 * 109.46934 * 60.00199 * 3 2 1 7 7 C 1.38811 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99769 * 190.54585 * 7 2 1 9 9 N 1.36932 * 119.99848 * 10.54965 * 7 2 1 10 10 C 1.47351 * 121.30608 * 30.89776 * 9 7 2 11 11 C 1.53198 * 108.80585 * 129.76906 * 10 9 7 12 12 O 1.43146 * 109.73943 * 51.20913 * 11 10 9 13 13 C 1.42606 * 113.62427 * 298.31053 * 12 11 10 14 14 H 1.09006 * 108.94549 * 304.18019 * 13 12 11 15 15 C 1.52774 * 111.12168 * 183.64720 * 13 12 11 16 16 C 1.53370 * 108.81775 * 177.44723 * 15 13 12 17 17 N 1.46849 * 109.23850 * 53.84397 * 16 15 13 18 18 C 1.34776 * 120.40592 * 127.72200 * 17 16 15 19 19 O 1.21587 * 119.99062 * 178.04063 * 18 17 16 20 20 C 1.47504 * 120.00506 * 358.03541 * 18 17 16 21 21 C 1.36820 * 126.94414 * 186.43419 * 20 18 17 22 22 C 1.41267 * 103.84528 * 179.97438 * 21 20 18 23 23 C 1.50710 * 126.70271 * 180.09676 * 22 21 20 24 24 C 1.52997 * 117.49656 * 343.88737 * 23 22 21 25 25 C 1.52990 * 117.49915 * 275.26379 * 23 22 21 26 26 N 1.30125 * 106.59289 * 0.33716 * 22 21 20 27 27 O 1.20892 * 111.97882 * 359.78383 * 26 22 21 28 28 C 1.47129 * 119.17870 * 307.74127 * 17 16 15 29 29 C 1.46881 * 121.30668 * 210.90128 * 9 7 2 30 30 H 1.09001 * 110.21713 * 112.01383 * 29 9 7 31 31 H 0.96998 * 119.99838 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.57898 * 9.97558 * 10 9 7 33 33 H 1.08995 * 109.69651 * 249.63129 * 10 9 7 34 34 H 1.08995 * 109.42927 * 291.12109 * 11 10 9 35 35 H 1.09002 * 109.42636 * 171.28625 * 11 10 9 36 36 H 1.09005 * 109.58154 * 57.65109 * 15 13 12 37 37 H 1.09005 * 109.58108 * 297.24889 * 15 13 12 38 38 H 1.08991 * 109.51161 * 293.91169 * 16 15 13 39 39 H 1.09001 * 109.51148 * 173.76744 * 16 15 13 40 40 H 1.08000 * 128.07963 * 0.03548 * 21 20 18 41 41 H 1.09002 * 115.54347 * 129.59401 * 23 22 21 42 42 H 1.08997 * 117.50493 * 359.97438 * 24 23 22 43 43 H 1.09001 * 117.49855 * 145.02329 * 24 23 22 44 44 H 1.08997 * 117.49920 * 214.98302 * 25 23 22 45 45 H 1.09004 * 117.50142 * 0.02562 * 25 23 22 46 46 H 1.09002 * 109.72619 * 293.56336 * 28 17 16 47 47 H 1.09003 * 109.72526 * 172.89544 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0766 -1.2099 0.1717 9 7 1.3430 -2.3781 -0.2161 10 6 0.1447 -2.4320 -1.0719 11 6 0.3159 -3.5633 -2.0906 12 8 0.6784 -4.7719 -1.4146 13 6 1.9182 -4.6857 -0.7151 14 1 2.6981 -4.3818 -1.4134 15 6 2.2928 -6.0290 -0.0913 16 6 3.6600 -5.8936 0.5905 17 7 3.6230 -4.7649 1.5292 18 6 4.0056 -4.9307 2.8108 19 8 4.0059 -3.9830 3.5725 20 6 4.4240 -6.2617 3.2894 21 6 4.7198 -6.6170 4.5771 22 6 5.0561 -7.9857 4.4814 23 6 5.4667 -8.8936 5.6121 24 6 5.8975 -8.2364 6.9249 25 6 6.9415 -8.8924 6.0190 26 7 4.9471 -8.3082 3.2255 27 8 4.5987 -7.3708 2.5462 28 6 3.1625 -3.4511 1.0533 29 6 1.7935 -3.6351 0.3957 30 1 1.0717 -3.9719 1.1397 31 1 -0.4850 0.8400 0.0004 32 1 0.0270 -1.4834 -1.5957 33 1 -0.7362 -2.6226 -0.4590 34 1 1.0985 -3.2964 -2.8007 35 1 -0.6217 -3.7144 -2.6256 36 1 2.3464 -6.7908 -0.8691 37 1 1.5425 -6.3106 0.6475 38 1 4.4266 -5.7152 -0.1633 39 1 3.8886 -6.8109 1.1332 40 1 4.6998 -5.9963 5.4607 41 1 4.9279 -9.8390 5.6752 42 1 5.8844 -7.1475 6.9707 43 1 5.6421 -8.7494 7.8521 44 1 7.3730 -9.8370 6.3502 45 1 7.6148 -8.2348 5.4693 46 1 3.8702 -3.0548 0.3251 47 1 3.0768 -2.7641 1.8953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074350737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:34 Heat of formation + Delta-G solvation = 59.011071 kcal Electronic energy + Delta-G solvation = -31471.692164 eV Core-core repulsion = 27239.571201 eV Total energy + Delta-G solvation = -4232.120962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.23968 -40.19992 -38.63253 -37.98354 -36.27737 -34.74402 -33.60816 -32.57044 -31.58011 -31.37638 -29.87262 -27.23827 -25.78082 -25.04472 -23.95769 -23.76472 -22.76602 -22.19387 -21.93039 -20.95930 -19.83605 -19.50764 -18.02464 -17.66386 -16.84170 -16.77588 -16.18433 -15.57548 -15.46711 -15.27669 -15.09244 -14.83822 -14.56204 -14.17842 -13.94907 -13.77387 -13.71955 -13.13412 -12.89844 -12.67370 -12.59346 -12.40533 -12.09960 -11.94605 -11.87838 -11.49386 -11.37391 -11.04366 -11.00735 -10.85675 -10.83445 -10.64498 -10.31168 -10.25219 -10.18595 -10.13116 -10.04922 -9.84353 -9.62582 -9.03027 -8.59045 -8.53764 -6.72708 -5.87815 -3.38314 0.66489 1.77125 2.40492 2.91497 3.05581 3.25096 3.32560 3.40810 3.42174 3.65451 4.15593 4.25048 4.38202 4.39366 4.48353 4.66168 4.70161 4.80960 4.98965 5.11231 5.16575 5.21837 5.29102 5.34300 5.38150 5.42158 5.58218 5.60240 5.64671 5.68443 5.71852 5.77448 5.80986 5.91665 6.08678 6.09175 6.21712 6.28553 6.40622 6.53704 6.56931 6.80399 7.09000 7.28185 7.49247 7.67441 7.81542 7.86923 8.03078 8.30683 9.06358 9.68093 10.27553 11.19998 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.002885 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.024910 B = 9702.415456 C =11056.981479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.010 3.990 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.071 0.929 9 N -0.587 5.587 10 C 0.144 3.856 11 C 0.038 3.962 12 O -0.388 6.388 13 C 0.076 3.924 14 H 0.054 0.946 15 C -0.123 4.123 16 C 0.098 3.902 17 N -0.594 5.594 18 C 0.598 3.402 19 O -0.509 6.509 20 C -0.070 4.070 21 C -0.151 4.151 22 C 0.045 3.955 23 C -0.088 4.088 24 C -0.163 4.163 25 C -0.163 4.163 26 N -0.346 5.346 27 O 0.114 5.886 28 C 0.124 3.876 29 C 0.137 3.863 30 H 0.038 0.962 31 H 0.255 0.745 32 H 0.094 0.906 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.182 0.818 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.012 -17.057 6.163 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.390 4.390 8 H 0.089 0.911 9 N -0.311 5.311 10 C 0.019 3.981 11 C -0.039 4.039 12 O -0.308 6.308 13 C 0.016 3.984 14 H 0.072 0.928 15 C -0.162 4.162 16 C -0.026 4.026 17 N -0.326 5.326 18 C 0.383 3.617 19 O -0.384 6.384 20 C -0.136 4.136 21 C -0.174 4.174 22 C -0.113 4.113 23 C -0.107 4.107 24 C -0.200 4.200 25 C -0.200 4.200 26 N -0.049 5.049 27 O 0.046 5.954 28 C 0.003 3.997 29 C 0.029 3.971 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.200 0.800 41 H 0.143 0.857 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.969 -17.630 5.868 21.086 hybrid contribution 0.251 1.669 0.455 1.748 sum 10.219 -15.961 6.323 19.979 Atomic orbital electron populations 1.69988 1.05338 1.25662 1.53411 1.25196 0.95411 0.98524 0.99828 0.86186 0.79382 0.83651 0.77359 1.20054 1.21492 1.21463 1.19144 0.90976 0.83352 1.45543 0.91116 1.43972 1.31527 1.02737 1.52894 1.21423 0.88708 0.96797 0.91211 1.23348 0.98973 0.86292 0.95315 1.87747 1.39012 1.35765 1.68232 1.22452 0.86796 0.94838 0.94306 0.92831 1.21831 0.96307 0.97560 1.00454 1.22224 0.97953 0.89373 0.93001 1.48228 1.63020 1.12661 1.08710 1.16669 0.78434 0.84203 0.82423 1.90894 1.54194 1.38508 1.54834 1.24359 1.07013 0.90214 0.91986 1.22773 1.01926 0.94794 0.97885 1.22612 1.03017 0.93370 0.92297 1.20119 0.99274 0.99170 0.92121 1.23074 1.02456 1.01113 0.93378 1.23040 0.90826 1.03310 1.02862 1.73670 1.14982 1.10920 1.05368 1.85092 1.62746 1.13853 1.33741 1.21935 0.95614 0.81442 1.00720 1.21300 0.93762 0.88926 0.93132 0.94399 0.93446 0.88791 0.95313 0.94093 0.90060 0.89838 0.90746 0.90313 0.87898 0.80037 0.85654 0.87975 0.87594 0.87779 0.88400 0.90197 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 11.13 55.49 0.62 -24.79 16 2 C 0.01 0.27 5.08 -17.43 -0.09 0.18 16 3 Si 0.90 21.18 29.57 -169.99 -5.03 16.15 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.26 -6.79 8.80 -15.06 -0.13 -6.92 16 8 H 0.07 1.78 6.34 -52.49 -0.33 1.45 16 9 N -0.59 -14.20 3.03 -164.35 -0.50 -14.70 16 10 C 0.14 3.37 5.37 -3.47 -0.02 3.35 16 11 C 0.04 0.74 6.95 37.26 0.26 1.00 16 12 O -0.39 -7.51 10.49 -35.23 -0.37 -7.88 16 13 C 0.08 1.34 2.48 -26.64 -0.07 1.28 16 14 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 15 C -0.12 -1.70 5.82 -26.66 -0.16 -1.85 16 16 C 0.10 1.22 6.28 -3.66 -0.02 1.20 16 17 N -0.59 -9.26 2.98 -173.92 -0.52 -9.78 16 18 C 0.60 9.57 7.69 -12.48 -0.10 9.47 16 19 O -0.51 -9.71 16.33 5.29 0.09 -9.63 16 20 C -0.07 -0.94 6.97 -36.32 -0.25 -1.19 16 21 C -0.15 -1.77 10.26 -38.95 -0.40 -2.17 16 22 C 0.04 0.50 6.94 -82.16 -0.57 -0.07 16 23 C -0.09 -0.71 6.33 -91.77 -0.58 -1.29 16 24 C -0.16 -1.01 10.04 -26.73 -0.27 -1.28 16 25 C -0.16 -1.07 10.23 -26.74 -0.27 -1.34 16 26 N -0.35 -4.33 12.04 33.52 0.40 -3.93 16 27 O 0.11 1.43 7.76 15.55 0.12 1.55 16 28 C 0.12 2.32 4.52 -3.70 -0.02 2.30 16 29 C 0.14 2.82 3.03 -67.52 -0.20 2.62 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.09 2.39 6.34 -51.93 -0.33 2.06 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.18 3.86 -54.63 -0.21 0.96 16 40 H 0.18 1.83 7.61 -52.49 -0.40 1.43 16 41 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.10 0.64 7.33 -51.93 -0.38 0.26 16 43 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.48 7.35 -51.93 -0.38 1.10 16 47 H 0.11 2.28 6.83 -51.93 -0.35 1.93 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -30.78 373.10 -9.05 -39.83 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.60 Total: 2.28 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -2.89 Total: 5.27 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.00 Total: -53.20 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.16 Total: -15.95 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.78 -9.05 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074350737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.840 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds