Wall clock time and date at job start Wed Apr 1 2020 04:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48502 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47191 * 299.99695 * 3 2 1 6 6 H 1.48504 * 109.46934 * 60.00199 * 3 2 1 7 7 C 1.38811 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99769 * 190.54585 * 7 2 1 9 9 N 1.36932 * 119.99848 * 10.54965 * 7 2 1 10 10 C 1.47351 * 121.30608 * 30.89776 * 9 7 2 11 11 C 1.53198 * 108.80585 * 129.76906 * 10 9 7 12 12 O 1.43146 * 109.73943 * 51.20913 * 11 10 9 13 13 C 1.42606 * 113.62427 * 298.31053 * 12 11 10 14 14 H 1.09006 * 108.94549 * 304.18019 * 13 12 11 15 15 C 1.52774 * 111.12168 * 183.64720 * 13 12 11 16 16 C 1.53370 * 108.81775 * 177.44723 * 15 13 12 17 17 N 1.46849 * 109.23850 * 53.84397 * 16 15 13 18 18 C 1.34776 * 120.40592 * 127.72200 * 17 16 15 19 19 O 1.21587 * 119.99062 * 178.04063 * 18 17 16 20 20 C 1.47504 * 120.00506 * 358.03541 * 18 17 16 21 21 C 1.36820 * 126.94414 * 186.43419 * 20 18 17 22 22 C 1.41267 * 103.84528 * 179.97438 * 21 20 18 23 23 C 1.50710 * 126.70271 * 180.09676 * 22 21 20 24 24 C 1.52997 * 117.49656 * 343.88737 * 23 22 21 25 25 C 1.52990 * 117.49915 * 275.26379 * 23 22 21 26 26 N 1.30125 * 106.59289 * 0.33716 * 22 21 20 27 27 O 1.20892 * 111.97882 * 359.78383 * 26 22 21 28 28 C 1.47129 * 119.17870 * 307.74127 * 17 16 15 29 29 C 1.46881 * 121.30668 * 210.90128 * 9 7 2 30 30 H 1.09001 * 110.21713 * 112.01383 * 29 9 7 31 31 H 0.96998 * 119.99838 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.57898 * 9.97558 * 10 9 7 33 33 H 1.08995 * 109.69651 * 249.63129 * 10 9 7 34 34 H 1.08995 * 109.42927 * 291.12109 * 11 10 9 35 35 H 1.09002 * 109.42636 * 171.28625 * 11 10 9 36 36 H 1.09005 * 109.58154 * 57.65109 * 15 13 12 37 37 H 1.09005 * 109.58108 * 297.24889 * 15 13 12 38 38 H 1.08991 * 109.51161 * 293.91169 * 16 15 13 39 39 H 1.09001 * 109.51148 * 173.76744 * 16 15 13 40 40 H 1.08000 * 128.07963 * 0.03548 * 21 20 18 41 41 H 1.09002 * 115.54347 * 129.59401 * 23 22 21 42 42 H 1.08997 * 117.50493 * 359.97438 * 24 23 22 43 43 H 1.09001 * 117.49855 * 145.02329 * 24 23 22 44 44 H 1.08997 * 117.49920 * 214.98302 * 25 23 22 45 45 H 1.09004 * 117.50142 * 0.02562 * 25 23 22 46 46 H 1.09002 * 109.72619 * 293.56336 * 28 17 16 47 47 H 1.09003 * 109.72526 * 172.89544 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0766 -1.2099 0.1717 9 7 1.3430 -2.3781 -0.2161 10 6 0.1447 -2.4320 -1.0719 11 6 0.3159 -3.5633 -2.0906 12 8 0.6784 -4.7719 -1.4146 13 6 1.9182 -4.6857 -0.7151 14 1 2.6981 -4.3818 -1.4134 15 6 2.2928 -6.0290 -0.0913 16 6 3.6600 -5.8936 0.5905 17 7 3.6230 -4.7649 1.5292 18 6 4.0056 -4.9307 2.8108 19 8 4.0059 -3.9830 3.5725 20 6 4.4240 -6.2617 3.2894 21 6 4.7198 -6.6170 4.5771 22 6 5.0561 -7.9857 4.4814 23 6 5.4667 -8.8936 5.6121 24 6 5.8975 -8.2364 6.9249 25 6 6.9415 -8.8924 6.0190 26 7 4.9471 -8.3082 3.2255 27 8 4.5987 -7.3708 2.5462 28 6 3.1625 -3.4511 1.0533 29 6 1.7935 -3.6351 0.3957 30 1 1.0717 -3.9719 1.1397 31 1 -0.4850 0.8400 0.0004 32 1 0.0270 -1.4834 -1.5957 33 1 -0.7362 -2.6226 -0.4590 34 1 1.0985 -3.2964 -2.8007 35 1 -0.6217 -3.7144 -2.6256 36 1 2.3464 -6.7908 -0.8691 37 1 1.5425 -6.3106 0.6475 38 1 4.4266 -5.7152 -0.1633 39 1 3.8886 -6.8109 1.1332 40 1 4.6998 -5.9963 5.4607 41 1 4.9279 -9.8390 5.6752 42 1 5.8844 -7.1475 6.9707 43 1 5.6421 -8.7494 7.8521 44 1 7.3730 -9.8370 6.3502 45 1 7.6148 -8.2348 5.4693 46 1 3.8702 -3.0548 0.3251 47 1 3.0768 -2.7641 1.8953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074350737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:33 Heat of formation + Delta-G solvation = 39.864036 kcal Electronic energy + Delta-G solvation = -31472.522442 eV Core-core repulsion = 27239.571201 eV Total energy + Delta-G solvation = -4232.951240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -46.18690 -41.57777 -40.13002 -38.59225 -37.64530 -36.54243 -34.49161 -33.89138 -33.16205 -32.78822 -31.39670 -29.00130 -27.24145 -25.96139 -25.43412 -24.96106 -23.71814 -23.30670 -22.95545 -22.30191 -21.40956 -20.59175 -19.00071 -18.87924 -18.57635 -17.91103 -17.36818 -17.04700 -16.91356 -16.54868 -16.32385 -16.21260 -15.63514 -15.51510 -15.37383 -15.21869 -14.95559 -14.68297 -14.67281 -14.00775 -13.88517 -13.39113 -13.19707 -12.99208 -12.93180 -12.86178 -12.70304 -12.43470 -12.40624 -12.35624 -12.19747 -12.01009 -11.94419 -11.80453 -11.46704 -11.39992 -11.25229 -11.01012 -10.73863 -10.71777 -10.55130 -9.90212 -8.70184 -7.91491 -5.45052 -0.39062 0.88562 1.25076 1.44711 1.47294 1.56714 1.71706 1.89671 2.45805 2.61608 2.82727 2.90232 3.21186 3.26102 3.41357 3.64293 3.75942 3.82311 3.89773 3.95252 3.99714 4.04524 4.13739 4.17497 4.19921 4.36304 4.39574 4.50209 4.53304 4.54765 4.66287 4.72888 4.80183 4.83494 4.85210 4.96762 5.00372 5.04889 5.09756 5.11589 5.20623 5.22418 5.34061 5.55601 5.61373 6.02062 6.26660 6.34670 6.63593 6.98141 7.04934 7.70640 8.27937 9.14640 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.002885 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.024910 B = 9702.415456 C =11056.981479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.045 4.045 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.296 1.296 7 C -0.261 4.261 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.148 3.852 11 C 0.051 3.949 12 O -0.392 6.392 13 C 0.080 3.920 14 H 0.062 0.938 15 C -0.114 4.114 16 C 0.099 3.901 17 N -0.593 5.593 18 C 0.600 3.400 19 O -0.549 6.549 20 C -0.084 4.084 21 C -0.142 4.142 22 C 0.052 3.948 23 C -0.108 4.108 24 C -0.153 4.153 25 C -0.157 4.157 26 N -0.357 5.357 27 O 0.115 5.885 28 C 0.139 3.861 29 C 0.134 3.866 30 H 0.008 0.992 31 H 0.251 0.749 32 H 0.069 0.931 33 H -0.004 1.004 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.195 0.805 41 H 0.136 0.864 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.100 -19.538 6.140 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.391 4.391 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.023 3.977 11 C -0.026 4.026 12 O -0.311 6.311 13 C 0.021 3.979 14 H 0.080 0.920 15 C -0.153 4.153 16 C -0.022 4.022 17 N -0.325 5.325 18 C 0.386 3.614 19 O -0.427 6.427 20 C -0.149 4.149 21 C -0.164 4.164 22 C -0.106 4.106 23 C -0.127 4.127 24 C -0.190 4.190 25 C -0.195 4.195 26 N -0.061 5.061 27 O 0.047 5.953 28 C 0.017 3.983 29 C 0.026 3.974 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.015 0.985 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.138 0.862 40 H 0.212 0.788 41 H 0.154 0.846 42 H 0.118 0.882 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.080 -20.163 5.821 24.215 hybrid contribution -0.392 2.351 0.556 2.447 sum 11.688 -17.812 6.377 22.238 Atomic orbital electron populations 1.70147 1.06729 1.25922 1.55298 1.25942 0.96138 1.01592 1.00427 0.85217 0.78817 0.79800 0.76722 1.18716 1.21321 1.22320 1.19479 0.91469 0.84177 1.43939 0.90495 1.44250 1.31493 1.03569 1.53567 1.21276 0.87503 0.97474 0.91482 1.23194 1.00779 0.84689 0.93970 1.87755 1.39858 1.35286 1.68225 1.22522 0.86452 0.95874 0.93095 0.91975 1.21843 0.96541 0.95938 1.00955 1.22469 0.97970 0.88782 0.93016 1.48230 1.62591 1.12313 1.09334 1.16910 0.77648 0.84844 0.82005 1.90868 1.55896 1.40156 1.55799 1.23859 1.08822 0.89553 0.92663 1.23057 1.00336 0.95348 0.97703 1.23043 1.01695 0.93356 0.92521 1.20323 1.00723 0.99469 0.92156 1.23199 1.01333 1.01191 0.93315 1.23129 0.89852 1.04113 1.02403 1.73654 1.15512 1.10772 1.06134 1.85047 1.63129 1.13455 1.33667 1.21497 0.94818 0.82770 0.99260 1.21426 0.93755 0.88391 0.93798 0.97450 0.93979 0.91245 0.98548 0.93001 0.87417 0.86553 0.91609 0.87771 0.86226 0.78785 0.84601 0.88199 0.85612 0.85894 0.89218 0.89676 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.97 11.13 21.65 0.24 -54.72 16 2 C -0.05 -2.49 5.08 84.86 0.43 -2.05 16 3 Si 0.97 44.47 29.57 68.60 2.03 46.50 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.26 -13.90 8.80 84.03 0.74 -13.16 16 8 H 0.08 3.93 6.34 -2.91 -0.02 3.91 16 9 N -0.60 -30.07 3.03 -673.89 -2.04 -32.11 16 10 C 0.15 7.16 5.37 86.28 0.46 7.62 16 11 C 0.05 1.93 6.95 72.05 0.50 2.43 16 12 O -0.39 -14.57 10.49 -148.98 -1.56 -16.13 16 13 C 0.08 2.71 2.48 30.65 0.08 2.79 16 14 H 0.06 2.05 8.13 -2.38 -0.02 2.03 16 15 C -0.11 -2.87 5.82 30.64 0.18 -2.70 16 16 C 0.10 2.24 6.28 86.44 0.54 2.79 16 17 N -0.59 -18.22 2.98 -822.43 -2.45 -20.68 16 18 C 0.60 19.19 7.69 86.69 0.67 19.85 16 19 O -0.55 -21.55 16.33 -3.99 -0.07 -21.62 16 20 C -0.08 -2.14 6.97 24.38 0.17 -1.97 16 21 C -0.14 -3.13 10.26 22.68 0.23 -2.90 16 22 C 0.05 1.04 6.94 43.56 0.30 1.34 16 23 C -0.11 -1.48 6.33 -11.54 -0.07 -1.55 16 24 C -0.15 -1.48 10.04 30.59 0.31 -1.17 16 25 C -0.16 -1.65 10.23 30.59 0.31 -1.33 16 26 N -0.36 -8.21 12.04 -48.86 -0.59 -8.80 16 27 O 0.12 2.66 7.76 65.81 0.51 3.17 16 28 C 0.14 5.30 4.52 86.26 0.39 5.69 16 29 C 0.13 5.62 3.03 45.05 0.14 5.76 16 30 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 32 H 0.07 3.68 6.34 -2.39 -0.02 3.66 16 33 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.12 2.41 3.86 -45.15 -0.17 2.24 16 40 H 0.20 3.67 7.61 -2.91 -0.02 3.64 16 41 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.10 1.02 7.33 -2.39 -0.02 1.01 16 43 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.09 3.14 7.35 -2.39 -0.02 3.12 16 47 H 0.07 3.28 6.83 -2.39 -0.02 3.26 16 Total: -1.00 -69.55 373.10 2.28 -67.27 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.84 Total: 15.68 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 5.38 Total: 21.43 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -4.84 Total: -116.31 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.12 Total: -34.57 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.55 2.28 -67.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074350737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.130 kcal (2) G-P(sol) polarization free energy of solvation -69.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds