Wall clock time and date at job start Wed Apr 1 2020 04:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99837 * 2 1 4 4 H 1.48501 * 109.46793 * 270.00337 * 3 2 1 5 5 H 1.48505 * 109.46953 * 29.99805 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00113 * 3 2 1 7 7 C 1.37868 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00870 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00018 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47636 * 180.02562 * 9 7 2 11 11 N 1.46491 * 109.47361 * 180.02562 * 10 9 7 12 12 C 1.34785 * 120.00374 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99337 * 359.97438 * 12 11 10 14 14 C 1.50693 * 120.00437 * 180.02562 * 12 11 10 15 15 H 1.09004 * 115.55063 * 298.76902 * 14 12 11 16 16 C 1.53027 * 117.52912 * 153.04037 * 14 12 11 17 17 C 1.52816 * 117.50499 * 84.44622 * 14 12 11 18 18 C 1.53182 * 117.71738 * 215.13345 * 17 14 12 19 19 C 1.53346 * 108.76773 * 201.11578 * 18 17 14 20 20 N 1.46833 * 108.81720 * 308.68925 * 19 18 17 21 21 C 1.34777 * 120.38205 * 236.87271 * 20 19 18 22 22 O 1.21499 * 119.99798 * 6.71398 * 21 20 19 23 23 C 1.48330 * 120.00079 * 186.70895 * 21 20 19 24 24 C 1.42270 * 126.93756 * 186.29723 * 23 21 20 25 25 C 1.35312 * 103.92378 * 180.27008 * 24 23 21 26 26 O 1.34014 * 106.66847 * 0.02562 * 25 24 23 27 27 N 1.20911 * 111.84609 * 0.02562 * 26 25 24 28 28 C 1.46837 * 119.23865 * 57.14825 * 20 19 18 29 29 C 1.53185 * 117.71227 * 359.89240 * 17 14 12 30 30 H 0.97003 * 120.00448 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.46512 * 59.99828 * 9 7 2 32 32 H 1.09004 * 109.46817 * 300.00390 * 9 7 2 33 33 H 1.09003 * 109.46849 * 59.99766 * 10 9 7 34 34 H 1.08998 * 109.47040 * 300.00906 * 10 9 7 35 35 H 0.97004 * 120.00459 * 0.02562 * 11 10 9 36 36 H 1.09001 * 117.50270 * 145.05181 * 16 14 12 37 37 H 1.09002 * 117.49883 * 0.02562 * 16 14 12 38 38 H 1.09001 * 109.59413 * 81.32928 * 18 17 14 39 39 H 1.09005 * 109.70594 * 320.96766 * 18 17 14 40 40 H 1.09000 * 109.57725 * 188.88644 * 19 18 17 41 41 H 1.09001 * 109.58209 * 68.49245 * 19 18 17 42 42 H 1.08003 * 128.03926 * 0.25353 * 24 23 21 43 43 H 1.08005 * 126.67189 * 180.02562 * 25 24 23 44 44 H 1.09005 * 109.57857 * 62.65339 * 28 20 19 45 45 H 1.09002 * 109.58386 * 183.05216 * 28 20 19 46 46 H 1.09005 * 109.58736 * 278.66560 * 29 17 14 47 47 H 1.08998 * 109.58856 * 38.94969 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9307 -0.0012 12 6 2.1869 -6.0980 -0.0007 13 8 3.3997 -6.0978 -0.0003 14 6 1.4336 -7.4031 -0.0020 15 1 0.7877 -7.5739 0.8593 16 6 2.1282 -8.6201 -0.6168 17 6 0.9686 -7.9483 -1.3517 18 6 -0.3703 -8.6910 -1.3971 19 6 -0.3982 -9.5820 -2.6449 20 7 -0.0425 -8.7694 -3.8150 21 6 -0.8815 -8.6843 -4.8664 22 8 -1.9889 -9.1799 -4.8014 23 6 -0.4530 -7.9855 -6.1026 24 6 -1.2524 -7.7006 -7.2444 25 6 -0.4042 -7.0645 -8.0852 26 8 0.7796 -6.9995 -7.4604 27 7 0.7396 -7.5126 -6.3663 28 6 1.2405 -8.0555 -3.8293 29 6 1.2993 -7.1290 -2.6031 30 1 -0.4851 0.8400 0.0004 31 1 0.6242 -2.5566 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6042 0.8895 34 1 2.8721 -3.6041 -0.8904 35 1 0.5430 -4.9308 -0.0019 36 1 1.9393 -9.5916 -0.1599 37 1 3.1307 -8.4770 -1.0202 38 1 -1.1867 -7.9704 -1.4443 39 1 -0.4788 -9.3081 -0.5051 40 1 -1.3985 -9.9944 -2.7769 41 1 0.3212 -10.3929 -2.5309 42 1 -2.2941 -7.9373 -7.4034 43 1 -0.6361 -6.6831 -9.0687 44 1 2.0590 -8.7742 -3.7869 45 1 1.3189 -7.4631 -4.7409 46 1 0.5728 -6.3240 -2.7153 47 1 2.3001 -6.7075 -2.5100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269316429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:16 Heat of formation + Delta-G solvation = 21.550807 kcal Electronic energy + Delta-G solvation = -30366.605734 eV Core-core repulsion = 26132.860372 eV Total energy + Delta-G solvation = -4233.745361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.46289 -40.76773 -39.66545 -37.92604 -35.65672 -34.81220 -34.40667 -32.83149 -32.44953 -31.36362 -30.26695 -29.59383 -25.83199 -25.35050 -24.06661 -23.40593 -23.31371 -23.09013 -20.93268 -20.80098 -19.77796 -19.04461 -18.13074 -17.93922 -17.46064 -16.83392 -16.37316 -16.29110 -15.55295 -15.35815 -15.12923 -14.87885 -14.57394 -14.37298 -14.17039 -14.01097 -13.86352 -13.71713 -13.41103 -13.16246 -12.83363 -12.54482 -12.35345 -12.20622 -12.11908 -11.56505 -11.47884 -11.22509 -11.05256 -10.92132 -10.80951 -10.67134 -10.53785 -10.36637 -10.28539 -10.13124 -10.08181 -9.77537 -9.47165 -9.20260 -8.93375 -8.55610 -8.36797 -6.10732 -4.13801 0.74010 1.32939 2.39291 2.76403 2.77453 2.87544 3.28218 3.34272 3.37889 3.46118 3.52343 3.71663 4.10196 4.38990 4.42679 4.45995 4.52231 4.63932 4.73256 4.74678 4.81856 4.99602 4.99720 5.18089 5.21239 5.26286 5.30525 5.34541 5.44718 5.46214 5.61833 5.64310 5.70592 5.78629 5.90161 6.00610 6.04340 6.22474 6.32346 6.32902 6.71497 6.91029 6.92094 7.49948 7.53411 7.59634 7.76385 7.87186 8.01291 8.26170 8.64723 8.92195 9.51191 11.00792 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.002715 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.875350 B =10311.474280 C =12309.814927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.122 3.878 11 N -0.717 5.717 12 C 0.536 3.464 13 O -0.550 6.550 14 C -0.176 4.176 15 H 0.126 0.874 16 C -0.137 4.137 17 C -0.106 4.106 18 C -0.097 4.097 19 C 0.116 3.884 20 N -0.593 5.593 21 C 0.598 3.402 22 O -0.526 6.526 23 C -0.024 4.024 24 C -0.186 4.186 25 C -0.051 4.051 26 O 0.116 5.884 27 N -0.327 5.327 28 C 0.089 3.911 29 C -0.100 4.100 30 H 0.262 0.738 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.398 0.602 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.182 0.818 43 H 0.225 0.775 44 H 0.074 0.926 45 H 0.123 0.877 46 H 0.075 0.925 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 -21.238 -13.135 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.000 4.000 11 N -0.366 5.366 12 C 0.321 3.679 13 O -0.429 6.429 14 C -0.197 4.197 15 H 0.144 0.856 16 C -0.175 4.175 17 C -0.107 4.107 18 C -0.135 4.135 19 C -0.006 4.006 20 N -0.326 5.326 21 C 0.384 3.616 22 O -0.401 6.401 23 C -0.182 4.182 24 C -0.209 4.209 25 C -0.132 4.132 26 O 0.044 5.956 27 N -0.030 5.030 28 C -0.034 4.034 29 C -0.138 4.138 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.231 0.769 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.199 0.801 43 H 0.242 0.758 44 H 0.092 0.908 45 H 0.140 0.860 46 H 0.094 0.906 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.037 -21.356 -12.359 24.758 hybrid contribution -0.896 1.021 -0.099 1.362 sum -2.932 -20.335 -12.459 24.028 Atomic orbital electron populations 1.69953 1.06091 1.26881 1.50344 1.24992 0.94886 0.99407 0.94970 0.86518 0.79855 0.83012 0.78215 1.20538 1.21152 1.19716 1.21047 0.93227 0.90390 1.51391 0.92272 1.19313 0.94171 0.91129 0.97799 1.21722 0.96044 0.81565 1.00716 1.46300 1.10551 1.06372 1.73340 1.19549 0.87501 0.84513 0.76361 1.90671 1.13898 1.87676 1.50609 1.22411 1.04557 0.94294 0.98475 0.85574 1.23066 0.97480 0.95277 1.01651 1.21487 0.95945 1.01446 0.91792 1.21565 0.95462 0.98652 0.97790 1.21664 1.02655 0.92805 0.83448 1.47892 1.19712 1.48253 1.16701 1.16994 0.84193 0.79190 0.81192 1.90788 1.19595 1.47958 1.81800 1.23573 0.91026 1.04877 0.98764 1.22773 1.02948 1.03028 0.92109 1.26082 0.83999 1.01980 1.01161 1.84836 1.33111 1.56499 1.21136 1.74003 1.20525 1.10616 0.97905 1.22565 0.84010 0.95773 1.01040 1.21648 1.03221 0.97121 0.91826 0.92838 0.96008 0.95983 0.92593 0.92637 0.76872 0.88062 0.87673 0.90479 0.89939 0.88470 0.90741 0.80107 0.75819 0.90754 0.86028 0.90626 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.12 2.59 5.61 -4.05 -0.02 2.57 16 11 N -0.72 -12.48 5.56 -60.30 -0.34 -12.81 16 12 C 0.54 8.95 6.09 -10.99 -0.07 8.88 16 13 O -0.55 -11.25 16.60 5.56 0.09 -11.16 16 14 C -0.18 -2.13 5.90 -91.86 -0.54 -2.67 16 15 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.14 -1.43 9.46 -26.80 -0.25 -1.68 16 17 C -0.11 -1.10 1.94 -154.49 -0.30 -1.40 16 18 C -0.10 -0.84 5.83 -26.46 -0.15 -0.99 16 19 C 0.12 1.04 6.44 -3.68 -0.02 1.02 16 20 N -0.59 -6.43 2.91 -173.37 -0.51 -6.94 16 21 C 0.60 7.39 7.70 -12.11 -0.09 7.30 16 22 O -0.53 -7.61 16.35 5.37 0.09 -7.52 16 23 C -0.02 -0.26 6.89 -82.53 -0.57 -0.83 16 24 C -0.19 -1.48 11.00 -39.08 -0.43 -1.91 16 25 C -0.05 -0.28 12.28 29.69 0.36 0.08 16 26 O 0.12 0.98 11.18 17.25 0.19 1.17 16 27 N -0.33 -3.44 8.60 33.29 0.29 -3.16 16 28 C 0.09 0.94 6.24 -3.44 -0.02 0.92 16 29 C -0.10 -1.18 5.25 -26.22 -0.14 -1.32 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.40 6.17 8.47 -40.82 -0.35 5.82 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.25 7.92 -51.93 -0.41 0.84 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 40 H 0.10 0.92 6.97 -51.93 -0.36 0.56 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.23 0.16 8.06 -52.48 -0.42 -0.27 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.12 1.38 4.00 -64.04 -0.26 1.12 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.08 1.13 7.35 -51.93 -0.38 0.75 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -34.67 392.03 -8.15 -42.82 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.79 Total: 3.81 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.80 Total: -3.08 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.18 Total: -48.30 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.37 Total: -17.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.67 -8.15 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269316429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.370 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds