Wall clock time and date at job start Wed Apr 1 2020 04:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99837 * 2 1 4 4 H 1.48501 * 109.46793 * 270.00337 * 3 2 1 5 5 H 1.48505 * 109.46953 * 29.99805 * 3 2 1 6 6 H 1.48496 * 109.47458 * 150.00113 * 3 2 1 7 7 C 1.37868 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00870 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00018 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47636 * 180.02562 * 9 7 2 11 11 N 1.46491 * 109.47361 * 180.02562 * 10 9 7 12 12 C 1.34785 * 120.00374 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99337 * 359.97438 * 12 11 10 14 14 C 1.50693 * 120.00437 * 180.02562 * 12 11 10 15 15 H 1.09004 * 115.55063 * 298.76902 * 14 12 11 16 16 C 1.53027 * 117.52912 * 153.04037 * 14 12 11 17 17 C 1.52816 * 117.50499 * 84.44622 * 14 12 11 18 18 C 1.53182 * 117.71738 * 215.13345 * 17 14 12 19 19 C 1.53346 * 108.76773 * 201.11578 * 18 17 14 20 20 N 1.46833 * 108.81720 * 308.68925 * 19 18 17 21 21 C 1.34777 * 120.38205 * 236.87271 * 20 19 18 22 22 O 1.21499 * 119.99798 * 6.71398 * 21 20 19 23 23 C 1.48330 * 120.00079 * 186.70895 * 21 20 19 24 24 C 1.42270 * 126.93756 * 186.29723 * 23 21 20 25 25 C 1.35312 * 103.92378 * 180.27008 * 24 23 21 26 26 O 1.34014 * 106.66847 * 0.02562 * 25 24 23 27 27 N 1.20911 * 111.84609 * 0.02562 * 26 25 24 28 28 C 1.46837 * 119.23865 * 57.14825 * 20 19 18 29 29 C 1.53185 * 117.71227 * 359.89240 * 17 14 12 30 30 H 0.97003 * 120.00448 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.46512 * 59.99828 * 9 7 2 32 32 H 1.09004 * 109.46817 * 300.00390 * 9 7 2 33 33 H 1.09003 * 109.46849 * 59.99766 * 10 9 7 34 34 H 1.08998 * 109.47040 * 300.00906 * 10 9 7 35 35 H 0.97004 * 120.00459 * 0.02562 * 11 10 9 36 36 H 1.09001 * 117.50270 * 145.05181 * 16 14 12 37 37 H 1.09002 * 117.49883 * 0.02562 * 16 14 12 38 38 H 1.09001 * 109.59413 * 81.32928 * 18 17 14 39 39 H 1.09005 * 109.70594 * 320.96766 * 18 17 14 40 40 H 1.09000 * 109.57725 * 188.88644 * 19 18 17 41 41 H 1.09001 * 109.58209 * 68.49245 * 19 18 17 42 42 H 1.08003 * 128.03926 * 0.25353 * 24 23 21 43 43 H 1.08005 * 126.67189 * 180.02562 * 25 24 23 44 44 H 1.09005 * 109.57857 * 62.65339 * 28 20 19 45 45 H 1.09002 * 109.58386 * 183.05216 * 28 20 19 46 46 H 1.09005 * 109.58736 * 278.66560 * 29 17 14 47 47 H 1.08998 * 109.58856 * 38.94969 * 29 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9307 -0.0012 12 6 2.1869 -6.0980 -0.0007 13 8 3.3997 -6.0978 -0.0003 14 6 1.4336 -7.4031 -0.0020 15 1 0.7877 -7.5739 0.8593 16 6 2.1282 -8.6201 -0.6168 17 6 0.9686 -7.9483 -1.3517 18 6 -0.3703 -8.6910 -1.3971 19 6 -0.3982 -9.5820 -2.6449 20 7 -0.0425 -8.7694 -3.8150 21 6 -0.8815 -8.6843 -4.8664 22 8 -1.9889 -9.1799 -4.8014 23 6 -0.4530 -7.9855 -6.1026 24 6 -1.2524 -7.7006 -7.2444 25 6 -0.4042 -7.0645 -8.0852 26 8 0.7796 -6.9995 -7.4604 27 7 0.7396 -7.5126 -6.3663 28 6 1.2405 -8.0555 -3.8293 29 6 1.2993 -7.1290 -2.6031 30 1 -0.4851 0.8400 0.0004 31 1 0.6242 -2.5566 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.8721 -3.6042 0.8895 34 1 2.8721 -3.6041 -0.8904 35 1 0.5430 -4.9308 -0.0019 36 1 1.9393 -9.5916 -0.1599 37 1 3.1307 -8.4770 -1.0202 38 1 -1.1867 -7.9704 -1.4443 39 1 -0.4788 -9.3081 -0.5051 40 1 -1.3985 -9.9944 -2.7769 41 1 0.3212 -10.3929 -2.5309 42 1 -2.2941 -7.9373 -7.4034 43 1 -0.6361 -6.6831 -9.0687 44 1 2.0590 -8.7742 -3.7869 45 1 1.3189 -7.4631 -4.7409 46 1 0.5728 -6.3240 -2.7153 47 1 2.3001 -6.7075 -2.5100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269316429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:15 Heat of formation + Delta-G solvation = -1.346532 kcal Electronic energy + Delta-G solvation = -30367.598637 eV Core-core repulsion = 26132.860372 eV Total energy + Delta-G solvation = -4234.738265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -46.14291 -41.73617 -40.80900 -39.05817 -36.77580 -36.38493 -35.10334 -34.82266 -33.09953 -32.15983 -31.69757 -30.96502 -27.25529 -26.52523 -24.95225 -24.74339 -24.11451 -23.79061 -22.74814 -21.61346 -21.04401 -19.85069 -18.83721 -18.78851 -18.57487 -18.29240 -17.83570 -17.18438 -16.71706 -16.60046 -16.45758 -16.39490 -15.83536 -15.46198 -15.21856 -14.99256 -14.81849 -14.52502 -14.32686 -14.31075 -14.24077 -14.13776 -13.39728 -13.26472 -13.03879 -13.02628 -12.95869 -12.56766 -12.38415 -12.31116 -12.27390 -11.80629 -11.70124 -11.57178 -11.51766 -11.38825 -11.12432 -11.05301 -10.74509 -10.70706 -10.63261 -10.04941 -9.80934 -8.26582 -6.37663 0.01031 0.76724 1.39944 1.40520 1.52102 1.53644 1.62764 1.94534 2.18802 2.26304 2.42003 2.66708 2.76613 3.08029 3.41894 3.51257 3.58544 3.70896 3.80073 3.91710 3.97115 4.05786 4.18489 4.20712 4.36786 4.43232 4.47355 4.49564 4.50572 4.59461 4.68083 4.80271 4.82729 4.86420 4.90492 4.92320 4.97314 5.01381 5.12539 5.22648 5.26548 5.41470 5.46257 5.53457 5.75300 6.04593 6.12863 6.60108 6.72277 6.75426 7.06515 7.25416 7.31993 8.85229 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.002715 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.875350 B =10311.474280 C =12309.814927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.142 3.858 11 N -0.714 5.714 12 C 0.535 3.465 13 O -0.590 6.590 14 C -0.185 4.185 15 H 0.154 0.846 16 C -0.123 4.123 17 C -0.096 4.096 18 C -0.088 4.088 19 C 0.112 3.888 20 N -0.592 5.592 21 C 0.592 3.408 22 O -0.556 6.556 23 C -0.053 4.053 24 C -0.205 4.205 25 C -0.022 4.022 26 O 0.114 5.886 27 N -0.347 5.347 28 C 0.095 3.905 29 C -0.098 4.098 30 H 0.266 0.734 31 H 0.005 0.995 32 H 0.007 0.993 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.408 0.592 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.193 0.807 43 H 0.276 0.724 44 H 0.086 0.914 45 H 0.117 0.883 46 H 0.056 0.944 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 -22.120 -13.716 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.018 3.982 11 N -0.364 5.364 12 C 0.323 3.677 13 O -0.471 6.471 14 C -0.206 4.206 15 H 0.172 0.828 16 C -0.160 4.160 17 C -0.097 4.097 18 C -0.126 4.126 19 C -0.009 4.009 20 N -0.324 5.324 21 C 0.379 3.621 22 O -0.434 6.434 23 C -0.210 4.210 24 C -0.228 4.228 25 C -0.102 4.102 26 O 0.042 5.958 27 N -0.051 5.051 28 C -0.027 4.027 29 C -0.136 4.136 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.243 0.757 36 H 0.155 0.845 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.210 0.790 43 H 0.292 0.708 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.075 0.925 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.067 -22.263 -12.922 25.824 hybrid contribution -0.882 1.312 -0.002 1.581 sum -2.949 -20.950 -12.925 24.792 Atomic orbital electron populations 1.70058 1.07573 1.28042 1.50902 1.25878 0.95795 1.03134 0.94319 0.85442 0.78633 0.78380 0.78592 1.19668 1.20429 1.19035 1.21457 0.93550 0.91921 1.51704 0.92345 1.19108 0.94153 0.91855 0.96145 1.21200 0.94997 0.82398 0.99626 1.46152 1.10958 1.05592 1.73657 1.20330 0.87233 0.85533 0.74579 1.90648 1.15895 1.88332 1.52206 1.22409 1.05552 0.92128 1.00484 0.82811 1.23188 0.96419 0.95909 1.00463 1.21489 0.97249 1.00926 0.89999 1.21562 0.93585 0.98507 0.98937 1.21849 1.03135 0.93163 0.82764 1.48005 1.19379 1.47966 1.17022 1.17280 0.83963 0.78963 0.81921 1.90754 1.20670 1.49448 1.82524 1.23694 0.92054 1.05994 0.99297 1.23065 1.03841 1.04116 0.91784 1.26966 0.81946 0.99410 1.01869 1.84794 1.34431 1.55915 1.20676 1.73988 1.20701 1.11472 0.98949 1.22479 0.84347 0.95756 1.00145 1.21551 1.01296 0.97190 0.93566 0.92508 0.97622 0.97437 0.93626 0.93769 0.75665 0.84481 0.89368 0.91592 0.86813 0.88865 0.88561 0.79028 0.70826 0.89569 0.86638 0.92489 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.71 13.29 21.44 0.28 -54.42 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.27 5.09 29.85 0.15 1.43 16 10 C 0.14 6.22 5.61 86.38 0.48 6.71 16 11 N -0.71 -25.35 5.56 -463.09 -2.57 -27.92 16 12 C 0.54 17.92 6.09 87.65 0.53 18.45 16 13 O -0.59 -24.51 16.60 -3.02 -0.05 -24.56 16 14 C -0.19 -4.15 5.90 -11.59 -0.07 -4.22 16 15 H 0.15 2.66 8.14 -2.39 -0.02 2.64 16 16 C -0.12 -2.25 9.46 30.55 0.29 -1.96 16 17 C -0.10 -1.85 1.94 -52.17 -0.10 -1.95 16 18 C -0.09 -1.33 5.83 30.77 0.18 -1.15 16 19 C 0.11 1.83 6.44 86.43 0.56 2.38 16 20 N -0.59 -12.65 2.91 -820.73 -2.39 -15.04 16 21 C 0.59 14.85 7.70 86.93 0.67 15.52 16 22 O -0.56 -16.39 16.35 -3.71 -0.06 -16.45 16 23 C -0.05 -1.17 6.89 42.96 0.30 -0.87 16 24 C -0.21 -3.09 11.00 22.60 0.25 -2.84 16 25 C -0.02 -0.19 12.28 67.14 0.82 0.63 16 26 O 0.11 1.82 11.18 71.89 0.80 2.62 16 27 N -0.35 -7.34 8.60 -49.52 -0.43 -7.77 16 28 C 0.10 2.03 6.24 86.58 0.54 2.57 16 29 C -0.10 -2.34 5.25 30.93 0.16 -2.18 16 30 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.41 12.84 8.47 -92.71 -0.79 12.05 16 36 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.99 7.92 -2.39 -0.02 1.97 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.07 8.11 -2.38 -0.02 1.05 16 40 H 0.09 1.66 6.97 -2.39 -0.02 1.64 16 41 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.19 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.28 -0.77 8.06 -2.91 -0.02 -0.80 16 44 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.12 2.70 4.00 -26.31 -0.11 2.60 16 46 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.06 1.76 7.35 -2.39 -0.02 1.74 16 Total: -1.00 -77.92 392.03 3.20 -74.72 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.12 Total: 20.31 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.46 Total: 2.67 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -5.10 Total: -105.16 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: 0.69 Total: -38.39 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -77.92 3.20 -74.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269316429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.371 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds