Wall clock time and date at job start Wed Apr 1 2020 05:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39742 * 119.91174 * 2 1 4 4 C 1.36133 * 119.16995 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.42153 * 179.97438 * 4 3 2 6 6 N 1.34990 * 119.15674 * 0.02562 * 4 3 2 7 7 C 1.36734 * 120.39982 * 359.97438 * 6 4 3 8 8 N 1.33402 * 107.85603 * 180.02562 * 7 6 4 9 9 C 1.33178 * 109.87547 * 359.97438 * 8 7 6 10 10 S 1.71197 * 125.55713 * 180.02562 * 9 8 7 11 11 N 1.34911 * 108.88905 * 0.26396 * 9 8 7 12 12 C 1.46497 * 126.67264 * 179.70709 * 11 9 8 13 13 N 1.46907 * 109.46687 * 96.28981 * 12 11 9 14 14 C 1.46902 * 110.99559 * 164.82068 * 13 12 11 15 15 C 1.50702 * 109.47002 * 194.16369 * 14 13 12 16 16 H 1.08006 * 119.99681 * 4.82297 * 15 14 13 17 17 C 1.37872 * 120.00328 * 184.82040 * 15 14 13 18 18 N 1.31521 * 119.99502 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00351 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47421 * 89.99594 * 19 17 15 21 21 H 1.48502 * 109.47072 * 210.00137 * 19 17 15 22 22 H 1.48501 * 109.46851 * 329.99658 * 19 17 15 23 23 C 1.46891 * 111.00033 * 288.77725 * 13 12 11 24 24 C 1.53004 * 109.47044 * 295.39847 * 23 13 12 25 25 C 1.53008 * 117.49659 * 242.83727 * 24 23 13 26 26 C 1.53005 * 117.49769 * 174.18101 * 24 23 13 27 27 N 1.31713 * 119.91390 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47462 * 269.97801 * 1 2 3 29 29 H 1.08999 * 109.47014 * 29.98239 * 1 2 3 30 30 H 1.09006 * 109.46665 * 149.98222 * 1 2 3 31 31 H 1.08001 * 120.41620 * 0.04212 * 3 2 1 32 32 H 1.09004 * 109.46719 * 96.19536 * 5 4 3 33 33 H 1.08997 * 109.47174 * 216.19231 * 5 4 3 34 34 H 1.08997 * 109.47090 * 336.20159 * 5 4 3 35 35 H 1.08994 * 109.47375 * 216.28596 * 12 11 9 36 36 H 1.08996 * 109.47326 * 336.29373 * 12 11 9 37 37 H 1.08998 * 109.47354 * 314.16363 * 14 13 12 38 38 H 1.09004 * 109.47078 * 74.17202 * 14 13 12 39 39 H 0.97006 * 119.99487 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47697 * 55.39371 * 23 13 12 41 41 H 1.08999 * 109.47248 * 175.40261 * 23 13 12 42 42 H 1.08991 * 115.55133 * 28.50924 * 24 23 13 43 43 H 1.09001 * 117.50107 * 0.02562 * 25 24 23 44 44 H 1.08998 * 117.49694 * 145.01947 * 25 24 23 45 45 H 1.08998 * 117.49969 * 214.97649 * 26 24 23 46 46 H 1.09001 * 117.49664 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2039 1.2113 0.0000 4 6 3.5651 1.1937 -0.0005 5 6 4.3450 2.4832 -0.0011 6 7 4.2075 0.0064 -0.0016 7 6 3.4995 -1.1634 -0.0016 8 7 4.3739 -2.1708 -0.0021 9 6 5.6166 -1.6917 -0.0031 10 16 7.0465 -2.6331 -0.0047 11 7 5.5649 -0.3436 0.0028 12 6 6.7056 0.5756 0.0099 13 7 6.9953 1.0071 -1.3641 14 6 7.8758 2.1830 -1.3720 15 6 7.8728 2.8036 -2.7453 16 1 7.2178 2.4159 -3.5116 17 6 8.7060 3.8662 -3.0234 18 7 9.5031 4.3386 -2.0900 19 14 8.7017 4.6360 -4.7255 20 1 7.6996 5.7309 -4.7711 21 1 10.0489 5.1851 -5.0238 22 1 8.3534 3.6038 -5.7347 23 6 7.5755 -0.0905 -2.1492 24 6 8.9347 -0.4750 -1.5612 25 6 10.1671 -0.2860 -2.4482 26 6 9.6425 -1.6941 -2.1562 27 7 2.1639 -1.1417 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6693 2.1497 0.0007 32 1 4.6283 2.7369 1.0204 33 1 5.2424 2.3648 -0.6083 34 1 3.7283 3.2806 -0.4157 35 1 6.4670 1.4459 0.6213 36 1 7.5778 0.0692 0.4232 37 1 7.5171 2.9104 -0.6438 38 1 8.8901 1.8791 -1.1130 39 1 10.0896 5.0860 -2.2859 40 1 6.9090 -0.9522 -2.1171 41 1 7.7046 0.2308 -3.1828 42 1 9.0519 -0.2971 -0.4924 43 1 10.0096 0.1127 -3.4503 44 1 11.0951 0.0160 -1.9626 45 1 10.2255 -2.3179 -1.4788 46 1 9.1399 -2.2218 -2.9668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103459617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:27 Heat of formation + Delta-G solvation = 198.518844 kcal Electronic energy + Delta-G solvation = -29381.249375 eV Core-core repulsion = 25630.223546 eV Total energy + Delta-G solvation = -3751.025829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.49698 -39.64706 -38.19224 -36.18072 -35.22411 -33.53019 -32.58754 -32.21062 -30.26087 -28.40012 -27.53959 -26.93845 -24.81699 -24.16528 -23.20004 -21.97108 -21.77892 -21.56185 -19.64339 -18.93955 -18.51267 -17.45148 -16.73220 -16.48384 -16.05943 -15.73452 -15.31555 -14.98283 -14.59657 -14.53416 -14.37841 -14.13646 -13.98826 -13.54901 -13.23610 -12.96061 -12.70777 -12.47546 -12.40703 -12.10304 -12.03158 -11.60449 -11.31679 -11.23653 -11.11199 -11.07566 -10.88171 -10.82925 -10.71727 -10.37736 -10.27871 -10.14745 -9.76929 -9.53038 -9.31342 -9.10052 -8.62666 -7.79860 -7.28863 -7.08372 -6.22600 -4.24926 -0.11257 0.10758 0.37915 1.92754 2.32404 2.87591 2.99252 3.11216 3.17739 3.26425 3.29537 3.60098 3.79395 4.14184 4.23476 4.41284 4.55552 4.63640 4.76607 4.79401 4.90212 4.98712 5.03184 5.10324 5.14111 5.18344 5.32462 5.38856 5.51855 5.54931 5.65597 5.77282 5.79932 5.84514 6.04839 6.19692 6.31285 6.34015 6.49214 6.61525 6.78744 6.85048 6.94745 6.98850 7.12495 7.42650 7.46314 7.65403 7.84993 8.17576 8.80913 9.40190 10.87503 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.004427 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.205568 B = 6323.364247 C = 8444.395046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.255 3.745 3 C -0.240 4.240 4 C 0.228 3.772 5 C -0.154 4.154 6 N -0.310 5.310 7 C 0.524 3.476 8 N -0.507 5.507 9 C 0.480 3.520 10 S -0.534 6.534 11 N -0.362 5.362 12 C 0.267 3.733 13 N -0.547 5.547 14 C 0.196 3.804 15 C -0.507 4.507 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.095 3.905 24 C -0.147 4.147 25 C -0.173 4.173 26 C -0.164 4.164 27 N -0.470 5.470 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.179 0.821 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.023 0.977 38 H 0.021 0.979 39 H 0.263 0.737 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.670 0.013 6.019 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 C -0.267 4.267 4 C 0.106 3.894 5 C -0.211 4.211 6 N -0.087 5.087 7 C 0.164 3.836 8 N -0.244 5.244 9 C 0.121 3.879 10 S -0.400 6.400 11 N -0.165 5.165 12 C 0.056 3.944 13 N -0.272 5.272 14 C 0.072 3.928 15 C -0.546 4.546 16 H 0.079 0.921 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.033 4.033 24 C -0.167 4.167 25 C -0.211 4.211 26 C -0.201 4.201 27 N -0.190 5.190 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.196 0.804 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.041 0.959 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.063 -1.840 5.830 17.187 hybrid contribution 0.655 2.315 -0.562 2.471 sum -15.408 0.475 5.267 16.291 Atomic orbital electron populations 1.20955 0.85735 1.05363 1.04779 1.22209 0.98378 0.86830 0.83161 1.21622 0.90463 1.01649 1.13005 1.21215 0.92603 0.86668 0.88894 1.21660 1.03303 0.90601 1.05529 1.46605 1.01633 1.09062 1.51420 1.22995 0.89379 0.80340 0.90899 1.72408 0.96598 1.23263 1.32150 1.24671 0.97533 0.80681 0.85044 1.93021 1.16354 1.59681 1.70934 1.50581 0.91759 1.07869 1.66300 1.22870 0.83996 0.91959 0.95528 1.62336 1.48995 1.08361 1.07491 1.19829 0.90252 0.84129 0.98588 1.20933 1.22302 1.14886 0.96440 0.92061 1.24900 0.95074 0.96831 0.97129 1.69934 1.24374 1.25805 1.33030 0.86534 0.77359 0.79443 0.84331 1.20707 1.21156 1.19850 1.21744 0.91811 0.91739 0.97976 1.22490 0.94084 1.02083 0.98020 1.22969 0.97865 0.99017 1.01200 1.22689 1.03847 0.90695 1.02916 1.68183 1.00400 1.28319 1.22052 0.88285 0.88775 0.88846 0.80364 0.88371 0.85845 0.87352 0.88060 0.86830 0.95881 0.96106 0.92727 0.92012 0.89868 0.88876 0.89013 0.89891 0.89834 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.38 10.19 36.01 0.37 -0.02 16 2 C 0.25 2.03 6.83 -82.08 -0.56 1.47 16 3 C -0.24 -1.63 9.37 -39.78 -0.37 -2.00 16 4 C 0.23 2.32 6.83 -81.96 -0.56 1.76 16 5 C -0.15 -1.40 8.70 36.01 0.31 -1.09 16 6 N -0.31 -4.42 3.84 -10.14 -0.04 -4.46 16 7 C 0.52 8.28 8.96 -322.61 -2.89 5.39 16 8 N -0.51 -9.73 11.29 -15.03 -0.17 -9.90 16 9 C 0.48 9.26 7.05 -88.21 -0.62 8.64 16 10 S -0.53 -11.24 27.77 -107.50 -2.99 -14.22 16 11 N -0.36 -6.01 3.60 -65.43 -0.24 -6.25 16 12 C 0.27 4.35 4.60 -63.31 -0.29 4.06 16 13 N -0.55 -10.21 3.82 -239.98 -0.92 -11.12 16 14 C 0.20 4.27 4.25 -4.97 -0.02 4.25 16 15 C -0.51 -12.47 8.50 -34.44 -0.29 -12.76 16 16 H 0.06 1.54 7.55 -52.48 -0.40 1.15 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -23.88 13.29 55.43 0.74 -23.15 16 19 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.10 1.87 5.09 -3.83 -0.02 1.85 16 24 C -0.15 -2.79 2.72 -90.61 -0.25 -3.03 16 25 C -0.17 -3.24 10.15 -26.69 -0.27 -3.51 16 26 C -0.16 -2.92 10.25 -26.69 -0.27 -3.19 16 27 N -0.47 -6.01 10.41 -9.96 -0.10 -6.11 16 28 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.09 8.09 -51.93 -0.42 -0.33 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 32 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.12 1.63 4.86 -51.93 -0.25 1.38 16 34 H 0.11 0.69 8.05 -51.93 -0.42 0.28 16 35 H 0.10 1.41 5.99 -51.93 -0.31 1.10 16 36 H 0.11 1.98 5.31 -51.93 -0.28 1.70 16 37 H 0.02 0.51 7.61 -51.93 -0.40 0.12 16 38 H 0.02 0.51 6.67 -51.93 -0.35 0.16 16 39 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.06 1.28 5.86 -51.93 -0.30 0.97 16 41 H 0.08 1.77 7.00 -51.93 -0.36 1.41 16 42 H 0.09 1.82 6.21 -51.93 -0.32 1.50 16 43 H 0.09 1.79 8.03 -51.93 -0.42 1.37 16 44 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 45 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -33.07 380.22 -15.16 -48.23 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.31 Total: 2.90 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -5.84 Total: 3.33 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.73 Total: -60.99 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -11.24 SS G_CDS: -2.99 Total: -14.22 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.07 -15.16 -48.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.745 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds