Wall clock time and date at job start Wed Apr 1 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39742 * 119.91174 * 2 1 4 4 C 1.36133 * 119.16995 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.42153 * 179.97438 * 4 3 2 6 6 N 1.34990 * 119.15674 * 0.02562 * 4 3 2 7 7 C 1.36734 * 120.39982 * 359.97438 * 6 4 3 8 8 N 1.33402 * 107.85603 * 180.02562 * 7 6 4 9 9 C 1.33178 * 109.87547 * 359.97438 * 8 7 6 10 10 S 1.71197 * 125.55713 * 180.02562 * 9 8 7 11 11 N 1.34911 * 108.88905 * 0.26396 * 9 8 7 12 12 C 1.46497 * 126.67264 * 179.70709 * 11 9 8 13 13 N 1.46907 * 109.46687 * 96.28981 * 12 11 9 14 14 C 1.46902 * 110.99559 * 164.82068 * 13 12 11 15 15 C 1.50702 * 109.47002 * 194.16369 * 14 13 12 16 16 H 1.08006 * 119.99681 * 4.82297 * 15 14 13 17 17 C 1.37872 * 120.00328 * 184.82040 * 15 14 13 18 18 N 1.31521 * 119.99502 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00351 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47421 * 89.99594 * 19 17 15 21 21 H 1.48502 * 109.47072 * 210.00137 * 19 17 15 22 22 H 1.48501 * 109.46851 * 329.99658 * 19 17 15 23 23 C 1.46891 * 111.00033 * 288.77725 * 13 12 11 24 24 C 1.53004 * 109.47044 * 295.39847 * 23 13 12 25 25 C 1.53008 * 117.49659 * 242.83727 * 24 23 13 26 26 C 1.53005 * 117.49769 * 174.18101 * 24 23 13 27 27 N 1.31713 * 119.91390 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47462 * 269.97801 * 1 2 3 29 29 H 1.08999 * 109.47014 * 29.98239 * 1 2 3 30 30 H 1.09006 * 109.46665 * 149.98222 * 1 2 3 31 31 H 1.08001 * 120.41620 * 0.04212 * 3 2 1 32 32 H 1.09004 * 109.46719 * 96.19536 * 5 4 3 33 33 H 1.08997 * 109.47174 * 216.19231 * 5 4 3 34 34 H 1.08997 * 109.47090 * 336.20159 * 5 4 3 35 35 H 1.08994 * 109.47375 * 216.28596 * 12 11 9 36 36 H 1.08996 * 109.47326 * 336.29373 * 12 11 9 37 37 H 1.08998 * 109.47354 * 314.16363 * 14 13 12 38 38 H 1.09004 * 109.47078 * 74.17202 * 14 13 12 39 39 H 0.97006 * 119.99487 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47697 * 55.39371 * 23 13 12 41 41 H 1.08999 * 109.47248 * 175.40261 * 23 13 12 42 42 H 1.08991 * 115.55133 * 28.50924 * 24 23 13 43 43 H 1.09001 * 117.50107 * 0.02562 * 25 24 23 44 44 H 1.08998 * 117.49694 * 145.01947 * 25 24 23 45 45 H 1.08998 * 117.49969 * 214.97649 * 26 24 23 46 46 H 1.09001 * 117.49664 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2039 1.2113 0.0000 4 6 3.5651 1.1937 -0.0005 5 6 4.3450 2.4832 -0.0011 6 7 4.2075 0.0064 -0.0016 7 6 3.4995 -1.1634 -0.0016 8 7 4.3739 -2.1708 -0.0021 9 6 5.6166 -1.6917 -0.0031 10 16 7.0465 -2.6331 -0.0047 11 7 5.5649 -0.3436 0.0028 12 6 6.7056 0.5756 0.0099 13 7 6.9953 1.0071 -1.3641 14 6 7.8758 2.1830 -1.3720 15 6 7.8728 2.8036 -2.7453 16 1 7.2178 2.4159 -3.5116 17 6 8.7060 3.8662 -3.0234 18 7 9.5031 4.3386 -2.0900 19 14 8.7017 4.6360 -4.7255 20 1 7.6996 5.7309 -4.7711 21 1 10.0489 5.1851 -5.0238 22 1 8.3534 3.6038 -5.7347 23 6 7.5755 -0.0905 -2.1492 24 6 8.9347 -0.4750 -1.5612 25 6 10.1671 -0.2860 -2.4482 26 6 9.6425 -1.6941 -2.1562 27 7 2.1639 -1.1417 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6693 2.1497 0.0007 32 1 4.6283 2.7369 1.0204 33 1 5.2424 2.3648 -0.6083 34 1 3.7283 3.2806 -0.4157 35 1 6.4670 1.4459 0.6213 36 1 7.5778 0.0692 0.4232 37 1 7.5171 2.9104 -0.6438 38 1 8.8901 1.8791 -1.1130 39 1 10.0896 5.0860 -2.2859 40 1 6.9090 -0.9522 -2.1171 41 1 7.7046 0.2308 -3.1828 42 1 9.0519 -0.2971 -0.4924 43 1 10.0096 0.1127 -3.4503 44 1 11.0951 0.0160 -1.9626 45 1 10.2255 -2.3179 -1.4788 46 1 9.1399 -2.2218 -2.9668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103459617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:26 Heat of formation + Delta-G solvation = 180.684913 kcal Electronic energy + Delta-G solvation = -29382.022712 eV Core-core repulsion = 25630.223546 eV Total energy + Delta-G solvation = -3751.799167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.64112 -40.70170 -39.67743 -37.32268 -36.56372 -35.04800 -33.96986 -33.40252 -31.15244 -29.42385 -28.97395 -28.29246 -26.15613 -25.55186 -24.25148 -23.48805 -23.12057 -22.96390 -21.12043 -19.98937 -19.59506 -18.63758 -18.44161 -17.72811 -17.54503 -17.23424 -16.80464 -16.18288 -15.91808 -15.71817 -15.37979 -15.03108 -14.80830 -14.68832 -14.31379 -14.15967 -14.01627 -13.61793 -13.27242 -13.17056 -13.12965 -13.01257 -12.81244 -12.78940 -12.67860 -12.64914 -12.45482 -12.31137 -12.27518 -12.04137 -11.52452 -11.33241 -11.22398 -11.10265 -10.68238 -10.55934 -10.44232 -9.41021 -8.80793 -8.65440 -8.18144 -6.25116 -1.07383 -0.83054 -0.77324 0.78029 0.95407 1.39985 1.44507 1.52132 1.78657 1.99426 2.02942 2.39751 2.70052 2.91488 2.97534 3.13960 3.17232 3.25830 3.58459 3.80810 3.85352 3.87063 4.09250 4.10670 4.19849 4.24454 4.35541 4.38035 4.44637 4.60460 4.65879 4.75987 4.80235 4.82096 4.85897 4.88763 5.02577 5.08005 5.09047 5.13548 5.29485 5.30809 5.31372 5.37427 5.61790 5.87551 5.95064 6.07679 6.32170 6.35758 6.85621 7.43084 8.91529 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.004427 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.205568 B = 6323.364247 C = 8444.395046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.258 3.742 3 C -0.193 4.193 4 C 0.196 3.804 5 C -0.151 4.151 6 N -0.307 5.307 7 C 0.513 3.487 8 N -0.550 5.550 9 C 0.488 3.512 10 S -0.615 6.615 11 N -0.363 5.363 12 C 0.277 3.723 13 N -0.540 5.540 14 C 0.215 3.785 15 C -0.509 4.509 16 H 0.052 0.948 17 C 0.022 3.978 18 N -0.922 5.922 19 Si 0.950 3.050 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.109 3.891 24 C -0.150 4.150 25 C -0.173 4.173 26 C -0.147 4.147 27 N -0.492 5.492 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.087 0.913 31 H 0.240 0.760 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.025 0.975 38 H -0.005 1.005 39 H 0.263 0.737 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.759 2.845 6.140 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 C -0.218 4.218 4 C 0.078 3.922 5 C -0.207 4.207 6 N -0.085 5.085 7 C 0.154 3.846 8 N -0.289 5.289 9 C 0.123 3.877 10 S -0.483 6.483 11 N -0.164 5.164 12 C 0.067 3.933 13 N -0.264 5.264 14 C 0.090 3.910 15 C -0.548 4.548 16 H 0.070 0.930 17 C -0.178 4.178 18 N -0.562 5.562 19 Si 0.777 3.223 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.019 4.019 24 C -0.169 4.169 25 C -0.211 4.211 26 C -0.185 4.185 27 N -0.213 5.213 28 H 0.141 0.859 29 H 0.152 0.848 30 H 0.106 0.894 31 H 0.256 0.744 32 H 0.133 0.867 33 H 0.100 0.900 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.117 0.883 37 H 0.043 0.957 38 H 0.013 0.987 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.283 1.086 5.953 21.166 hybrid contribution 1.460 1.608 -0.559 2.243 sum -18.822 2.694 5.394 19.764 Atomic orbital electron populations 1.21266 0.81725 1.07050 1.06618 1.23246 1.00555 0.85919 0.80099 1.22448 0.88703 1.03533 1.07108 1.21982 0.93941 0.85690 0.90618 1.21698 1.02144 0.90805 1.06078 1.46692 0.99826 1.10316 1.51623 1.23044 0.90267 0.80140 0.91149 1.72193 0.97123 1.25458 1.34078 1.24127 0.96962 0.81254 0.85339 1.92972 1.18343 1.61667 1.75360 1.50094 0.93431 1.07080 1.65771 1.22795 0.83909 0.92399 0.94205 1.62222 1.47889 1.07328 1.08974 1.19446 0.89377 0.84879 0.97272 1.21118 1.21716 1.14693 0.97273 0.92990 1.25524 0.94886 0.97399 0.99973 1.70026 1.25181 1.26397 1.34588 0.85672 0.77277 0.78728 0.80653 1.19519 1.21443 1.20099 1.21493 0.92034 0.91405 0.97002 1.22383 0.93853 1.03136 0.97576 1.22924 0.97849 0.99724 1.00573 1.22635 1.03050 0.90226 1.02578 1.68346 0.98605 1.30957 1.23424 0.85876 0.84835 0.89409 0.74354 0.86669 0.89958 0.83788 0.85446 0.88256 0.95745 0.98679 0.92780 0.93111 0.91907 0.89593 0.89967 0.89529 0.89246 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.10 10.19 71.24 0.73 0.63 16 2 C 0.26 2.88 6.83 42.94 0.29 3.18 16 3 C -0.19 -1.45 9.37 22.14 0.21 -1.24 16 4 C 0.20 3.29 6.83 41.58 0.28 3.57 16 5 C -0.15 -2.18 8.70 71.24 0.62 -1.56 16 6 N -0.31 -8.41 3.84 -186.00 -0.71 -9.13 16 7 C 0.51 15.98 8.96 261.42 2.34 18.32 16 8 N -0.55 -21.93 11.29 -201.47 -2.27 -24.21 16 9 C 0.49 19.77 7.05 179.51 1.27 21.03 16 10 S -0.62 -27.73 27.77 -56.49 -1.57 -29.30 16 11 N -0.36 -12.31 3.60 -360.91 -1.30 -13.61 16 12 C 0.28 9.27 4.60 170.80 0.79 10.05 16 13 N -0.54 -20.67 3.82 -913.17 -3.49 -24.16 16 14 C 0.22 9.55 4.25 85.56 0.36 9.92 16 15 C -0.51 -25.23 8.50 25.60 0.22 -25.02 16 16 H 0.05 2.64 7.55 -2.91 -0.02 2.62 16 17 C 0.02 1.10 5.46 84.65 0.46 1.56 16 18 N -0.92 -49.52 13.29 21.45 0.28 -49.24 16 19 Si 0.95 40.87 29.54 68.60 2.03 42.90 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 C 0.11 4.49 5.09 86.31 0.44 4.93 16 24 C -0.15 -5.99 2.72 -10.79 -0.03 -6.02 16 25 C -0.17 -6.75 10.15 30.62 0.31 -6.44 16 26 C -0.15 -5.48 10.25 30.62 0.31 -5.17 16 27 N -0.49 -11.54 10.41 -185.41 -1.93 -13.47 16 28 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.13 -0.80 8.09 -2.39 -0.02 -0.82 16 30 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.24 -1.05 8.06 -2.91 -0.02 -1.07 16 32 H 0.12 1.26 8.08 -2.38 -0.02 1.24 16 33 H 0.08 2.01 4.86 -2.39 -0.01 2.00 16 34 H 0.14 1.02 8.05 -2.39 -0.02 1.00 16 35 H 0.13 3.52 5.99 -2.39 -0.01 3.51 16 36 H 0.10 3.66 5.31 -2.39 -0.01 3.65 16 37 H 0.02 1.09 7.61 -2.39 -0.02 1.07 16 38 H 0.00 -0.23 6.67 -2.38 -0.02 -0.25 16 39 H 0.26 13.57 8.31 -92.70 -0.77 12.80 16 40 H 0.05 2.23 5.86 -2.39 -0.01 2.21 16 41 H 0.06 2.81 7.00 -2.39 -0.02 2.79 16 42 H 0.09 3.58 6.21 -2.39 -0.01 3.56 16 43 H 0.08 3.34 8.03 -2.39 -0.02 3.32 16 44 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 45 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -79.21 380.22 0.65 -78.56 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.01 Total: 13.90 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: 8.60 Total: 27.75 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -9.42 Total: -133.80 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: -27.73 SS G_CDS: -1.57 Total: -29.30 kcal Total: -79.21 0.65 -78.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103459617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.248 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds