Wall clock time and date at job start Wed Apr 1 2020 05:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35721 * 117.00144 * 2 1 4 4 N 1.32154 * 119.72960 * 359.72918 * 3 2 1 5 5 C 1.31999 * 121.72187 * 179.75345 * 4 3 2 6 6 C 1.38099 * 120.98689 * 0.52325 * 5 4 3 7 7 C 1.50700 * 120.32108 * 179.72110 * 6 5 4 8 8 C 1.38698 * 119.36154 * 359.74546 * 6 5 4 9 9 C 1.39040 * 118.41542 * 359.97438 * 8 6 5 10 10 N 1.39887 * 120.51127 * 180.02562 * 9 8 6 11 11 C 1.34780 * 119.99885 * 22.46644 * 10 9 8 12 12 O 1.21388 * 120.00343 * 5.68009 * 11 10 9 13 13 C 1.49339 * 119.99618 * 185.68450 * 11 10 9 14 14 O 1.21355 * 119.99997 * 0.52717 * 13 11 10 15 15 N 1.34776 * 119.99738 * 180.52824 * 13 11 10 16 16 C 1.46506 * 119.99903 * 354.69770 * 15 13 11 17 17 C 1.50702 * 109.46822 * 83.23235 * 16 15 13 18 18 H 1.07997 * 120.00315 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99415 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99476 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00223 * 359.97438 * 19 17 16 22 22 H 1.48492 * 109.47424 * 90.00030 * 21 19 17 23 23 H 1.48500 * 109.47115 * 210.00346 * 21 19 17 24 24 H 1.48505 * 109.47260 * 329.99853 * 21 19 17 25 25 C 1.46498 * 119.99964 * 174.69555 * 15 13 11 26 26 C 1.53003 * 109.46695 * 94.87423 * 25 15 13 27 27 C 1.52999 * 117.49701 * 243.62009 * 26 25 15 28 28 C 1.52997 * 60.00012 * 252.51484 * 27 26 25 29 29 H 1.08993 * 109.47452 * 59.99937 * 1 2 3 30 30 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46932 * 299.99700 * 1 2 3 32 32 H 1.08000 * 119.50666 * 180.24508 * 5 4 3 33 33 H 1.08997 * 109.47761 * 270.02367 * 7 6 5 34 34 H 1.09003 * 109.46794 * 30.02477 * 7 6 5 35 35 H 1.09000 * 109.47231 * 150.02048 * 7 6 5 36 36 H 1.07998 * 120.79436 * 180.02562 * 8 6 5 37 37 H 0.96998 * 119.99922 * 202.46653 * 10 9 8 38 38 H 1.09001 * 109.47051 * 203.23052 * 16 15 13 39 39 H 1.08993 * 109.47171 * 323.22826 * 16 15 13 40 40 H 0.97003 * 119.99958 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.47356 * 214.87403 * 25 15 13 42 42 H 1.08999 * 109.47340 * 334.87801 * 25 15 13 43 43 H 1.09004 * 115.55342 * 29.33296 * 26 25 15 44 44 H 1.08996 * 117.50025 * 0.02562 * 27 26 25 45 45 H 1.08998 * 117.49948 * 145.02472 * 27 26 25 46 46 H 1.09006 * 117.49855 * 252.51134 * 28 27 26 47 47 H 1.09006 * 117.50351 * 107.49303 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 7 1.3202 2.3142 -0.0054 5 6 1.8782 3.5104 -0.0008 6 6 3.2517 3.6543 -0.0009 7 6 3.8729 5.0273 -0.0019 8 6 4.0540 2.5229 -0.0005 9 6 3.4392 1.2758 0.0005 10 7 4.2061 0.1059 0.0015 11 6 5.4776 0.1340 0.4475 12 8 5.9245 1.1477 0.9436 13 6 6.3366 -1.0820 0.3313 14 8 5.8928 -2.0925 -0.1734 15 7 7.6047 -1.0573 0.7871 16 6 8.1782 0.1937 1.2897 17 6 7.7706 0.3913 2.7270 18 1 7.1465 -0.3414 3.2170 19 6 8.1945 1.5075 3.4165 20 7 7.8392 1.6797 4.6710 21 14 9.2745 2.7744 2.5693 22 1 8.4189 3.8030 1.9252 23 1 10.1574 3.4223 3.5723 24 1 10.1061 2.1051 1.5370 25 6 8.4097 -2.2812 0.7798 26 6 9.2529 -2.3295 -0.4960 27 6 8.9780 -3.4667 -1.4818 28 6 10.2541 -3.4776 -0.6379 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2513 4.3899 -0.0015 33 1 4.0223 5.3578 -1.0297 34 1 3.2119 5.7255 0.5118 35 1 4.8336 4.9919 0.5117 36 1 5.1306 2.6085 -0.0001 37 1 3.8227 -0.7255 -0.3189 38 1 9.2652 0.1476 1.2233 39 1 7.8127 1.0275 0.6904 40 1 8.1377 2.4648 5.1563 41 1 9.0663 -2.2895 1.6499 42 1 7.7514 -3.1493 0.8132 43 1 9.5353 -1.3614 -0.9098 44 1 8.1962 -4.1803 -1.2218 45 1 9.0793 -3.2470 -2.5446 46 1 11.1951 -3.2650 -1.1456 47 1 10.3122 -4.1986 0.1776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132587596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:40 Heat of formation + Delta-G solvation = -18.487941 kcal Electronic energy + Delta-G solvation = -31300.038377 eV Core-core repulsion = 27064.556805 eV Total energy + Delta-G solvation = -4235.481572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10582 -40.03096 -38.40709 -37.84719 -37.01336 -35.58745 -34.29000 -33.06603 -32.37228 -30.32772 -28.51885 -27.92490 -27.11697 -26.24598 -24.53184 -23.02576 -22.43645 -22.16477 -21.48493 -20.42595 -19.42531 -18.36488 -17.75854 -17.08931 -16.83007 -16.50415 -16.12723 -16.02042 -15.28367 -15.12503 -14.60393 -14.56963 -14.32643 -14.11806 -14.02673 -13.86906 -13.59363 -13.19426 -13.01056 -12.66388 -12.61134 -12.54949 -12.19271 -12.04963 -11.87740 -11.72370 -11.56170 -11.38461 -11.06758 -11.04078 -10.85863 -10.72547 -10.44962 -10.40791 -10.15324 -9.80029 -9.75922 -9.53295 -9.06857 -8.67909 -8.51467 -8.00059 -7.73139 -6.07557 -4.04738 1.07777 1.34947 2.06852 2.70944 3.05135 3.28378 3.33325 3.35303 3.64322 3.81279 3.93689 4.05069 4.40061 4.42274 4.73630 4.88365 4.92202 5.08479 5.09973 5.15308 5.16160 5.17538 5.26530 5.27608 5.35315 5.55477 5.58106 5.65125 5.73232 5.74305 5.84674 5.88322 6.00366 6.02007 6.04092 6.23733 6.27916 6.32773 6.42551 6.49014 6.67947 6.85004 7.07240 7.25519 7.41568 7.54880 7.84326 7.85418 8.16563 8.43496 8.56616 8.93028 9.52379 11.05972 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.004281 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.802418 B = 6539.714454 C = 8727.633628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.310 6.310 3 C 0.284 3.716 4 N -0.517 5.517 5 C 0.105 3.895 6 C -0.146 4.146 7 C -0.105 4.105 8 C -0.065 4.065 9 C 0.107 3.893 10 N -0.644 5.644 11 C 0.493 3.507 12 O -0.439 6.439 13 C 0.514 3.486 14 O -0.548 6.548 15 N -0.552 5.552 16 C 0.200 3.800 17 C -0.514 4.514 18 H 0.072 0.928 19 C 0.080 3.920 20 N -0.897 5.897 21 Si 0.874 3.126 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.267 1.267 25 C 0.146 3.854 26 C -0.165 4.165 27 C -0.174 4.174 28 C -0.177 4.177 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.157 0.843 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.423 0.577 38 H 0.032 0.968 39 H 0.054 0.946 40 H 0.263 0.737 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 -0.781 -12.607 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.218 6.218 3 C 0.102 3.898 4 N -0.239 5.239 5 C -0.051 4.051 6 C -0.149 4.149 7 C -0.162 4.162 8 C -0.092 4.092 9 C 0.008 3.992 10 N -0.291 5.291 11 C 0.275 3.725 12 O -0.307 6.307 13 C 0.296 3.704 14 O -0.428 6.428 15 N -0.282 5.282 16 C 0.080 3.920 17 C -0.552 4.552 18 H 0.090 0.910 19 C -0.122 4.122 20 N -0.535 5.535 21 Si 0.701 3.299 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.192 1.192 25 C 0.023 3.977 26 C -0.184 4.184 27 C -0.211 4.211 28 C -0.215 4.215 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.175 0.825 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.184 0.816 37 H 0.260 0.740 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.712 -0.829 -12.322 14.560 hybrid contribution 0.936 0.581 -0.258 1.132 sum -6.775 -0.248 -12.580 14.291 Atomic orbital electron populations 1.22803 0.77233 1.02752 1.02260 1.86185 1.22883 1.24209 1.88495 1.19429 0.87385 0.85439 0.97596 1.67253 1.39653 0.98412 1.18592 1.22151 0.92238 0.93373 0.97305 1.20686 0.94244 0.96618 1.03357 1.20653 1.01411 0.91888 1.02277 1.21789 1.02688 0.88879 0.95881 1.17755 0.87415 0.88001 1.05982 1.43021 1.12339 1.10920 1.62843 1.20402 0.82391 0.90289 0.79466 1.90865 1.71172 1.32391 1.36293 1.19626 0.83207 0.87631 0.79972 1.90672 1.73560 1.33477 1.45108 1.47835 1.10604 1.12197 1.57566 1.20301 0.94055 0.80875 0.96802 1.21075 1.32545 1.08035 0.93578 0.91024 1.24724 0.95743 0.97217 0.94536 1.69889 1.45544 1.28647 1.09444 0.86898 0.80815 0.82593 0.79599 1.19840 1.21350 1.19196 1.21074 0.93336 0.87257 0.95987 1.22745 1.02014 0.94666 0.98983 1.22983 0.99343 1.01907 0.96845 1.22922 0.93871 1.01564 1.03125 0.92493 0.88752 0.92384 0.82532 0.91189 0.91302 0.90846 0.81588 0.73953 0.95024 0.92816 0.92662 0.89203 0.89946 0.87722 0.88554 0.89367 0.89008 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 101.05 1.05 1.52 16 2 O -0.31 -4.48 9.88 -18.87 -0.19 -4.67 16 3 C 0.28 4.48 7.51 -16.92 -0.13 4.35 16 4 N -0.52 -7.57 9.21 -13.16 -0.12 -7.69 16 5 C 0.11 1.36 10.84 -17.53 -0.19 1.17 16 6 C -0.15 -2.02 5.89 -104.50 -0.62 -2.64 16 7 C -0.10 -1.16 10.03 36.01 0.36 -0.80 16 8 C -0.06 -1.07 8.53 -39.11 -0.33 -1.41 16 9 C 0.11 1.81 6.50 -83.39 -0.54 1.27 16 10 N -0.64 -11.19 5.29 -10.08 -0.05 -11.24 16 11 C 0.49 9.87 7.56 -11.64 -0.09 9.79 16 12 O -0.44 -9.85 9.20 5.46 0.05 -9.80 16 13 C 0.51 10.38 7.67 -11.64 -0.09 10.29 16 14 O -0.55 -11.04 16.04 5.49 0.09 -10.95 16 15 N -0.55 -11.16 2.48 -175.61 -0.43 -11.60 16 16 C 0.20 4.53 3.86 -5.19 -0.02 4.51 16 17 C -0.51 -13.94 8.31 -34.44 -0.29 -14.23 16 18 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 19 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 20 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 21 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 25 C 0.15 2.49 5.68 -4.04 -0.02 2.47 16 26 C -0.16 -2.41 6.01 -90.62 -0.54 -2.95 16 27 C -0.17 -2.22 10.18 -26.73 -0.27 -2.49 16 28 C -0.18 -2.09 10.25 -26.73 -0.27 -2.37 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 32 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 36 H 0.17 2.98 5.74 -52.49 -0.30 2.68 16 37 H 0.42 6.75 7.80 -40.82 -0.32 6.43 16 38 H 0.03 0.70 7.08 -51.93 -0.37 0.33 16 39 H 0.05 1.24 5.29 -51.93 -0.27 0.97 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 41 H 0.09 1.52 8.11 -51.93 -0.42 1.10 16 42 H 0.08 1.39 7.09 -51.93 -0.37 1.02 16 43 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.10 1.26 8.03 -51.93 -0.42 0.84 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -32.26 393.74 -7.41 -39.67 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.70 Total: 9.78 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -2.09 Total: 10.66 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.16 Total: -56.78 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.26 -7.41 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132587596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.181 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds