Wall clock time and date at job start Wed Apr 1 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35721 * 117.00144 * 2 1 4 4 N 1.32154 * 119.72960 * 359.72918 * 3 2 1 5 5 C 1.31999 * 121.72187 * 179.75345 * 4 3 2 6 6 C 1.38099 * 120.98689 * 0.52325 * 5 4 3 7 7 C 1.50700 * 120.32108 * 179.72110 * 6 5 4 8 8 C 1.38698 * 119.36154 * 359.74546 * 6 5 4 9 9 C 1.39040 * 118.41542 * 359.97438 * 8 6 5 10 10 N 1.39887 * 120.51127 * 180.02562 * 9 8 6 11 11 C 1.34780 * 119.99885 * 22.46644 * 10 9 8 12 12 O 1.21388 * 120.00343 * 5.68009 * 11 10 9 13 13 C 1.49339 * 119.99618 * 185.68450 * 11 10 9 14 14 O 1.21355 * 119.99997 * 0.52717 * 13 11 10 15 15 N 1.34776 * 119.99738 * 180.52824 * 13 11 10 16 16 C 1.46506 * 119.99903 * 354.69770 * 15 13 11 17 17 C 1.50702 * 109.46822 * 83.23235 * 16 15 13 18 18 H 1.07997 * 120.00315 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99415 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99476 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00223 * 359.97438 * 19 17 16 22 22 H 1.48492 * 109.47424 * 90.00030 * 21 19 17 23 23 H 1.48500 * 109.47115 * 210.00346 * 21 19 17 24 24 H 1.48505 * 109.47260 * 329.99853 * 21 19 17 25 25 C 1.46498 * 119.99964 * 174.69555 * 15 13 11 26 26 C 1.53003 * 109.46695 * 94.87423 * 25 15 13 27 27 C 1.52999 * 117.49701 * 243.62009 * 26 25 15 28 28 C 1.52997 * 60.00012 * 252.51484 * 27 26 25 29 29 H 1.08993 * 109.47452 * 59.99937 * 1 2 3 30 30 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46932 * 299.99700 * 1 2 3 32 32 H 1.08000 * 119.50666 * 180.24508 * 5 4 3 33 33 H 1.08997 * 109.47761 * 270.02367 * 7 6 5 34 34 H 1.09003 * 109.46794 * 30.02477 * 7 6 5 35 35 H 1.09000 * 109.47231 * 150.02048 * 7 6 5 36 36 H 1.07998 * 120.79436 * 180.02562 * 8 6 5 37 37 H 0.96998 * 119.99922 * 202.46653 * 10 9 8 38 38 H 1.09001 * 109.47051 * 203.23052 * 16 15 13 39 39 H 1.08993 * 109.47171 * 323.22826 * 16 15 13 40 40 H 0.97003 * 119.99958 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.47356 * 214.87403 * 25 15 13 42 42 H 1.08999 * 109.47340 * 334.87801 * 25 15 13 43 43 H 1.09004 * 115.55342 * 29.33296 * 26 25 15 44 44 H 1.08996 * 117.50025 * 0.02562 * 27 26 25 45 45 H 1.08998 * 117.49948 * 145.02472 * 27 26 25 46 46 H 1.09006 * 117.49855 * 252.51134 * 28 27 26 47 47 H 1.09006 * 117.50351 * 107.49303 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 7 1.3202 2.3142 -0.0054 5 6 1.8782 3.5104 -0.0008 6 6 3.2517 3.6543 -0.0009 7 6 3.8729 5.0273 -0.0019 8 6 4.0540 2.5229 -0.0005 9 6 3.4392 1.2758 0.0005 10 7 4.2061 0.1059 0.0015 11 6 5.4776 0.1340 0.4475 12 8 5.9245 1.1477 0.9436 13 6 6.3366 -1.0820 0.3313 14 8 5.8928 -2.0925 -0.1734 15 7 7.6047 -1.0573 0.7871 16 6 8.1782 0.1937 1.2897 17 6 7.7706 0.3913 2.7270 18 1 7.1465 -0.3414 3.2170 19 6 8.1945 1.5075 3.4165 20 7 7.8392 1.6797 4.6710 21 14 9.2745 2.7744 2.5693 22 1 8.4189 3.8030 1.9252 23 1 10.1574 3.4223 3.5723 24 1 10.1061 2.1051 1.5370 25 6 8.4097 -2.2812 0.7798 26 6 9.2529 -2.3295 -0.4960 27 6 8.9780 -3.4667 -1.4818 28 6 10.2541 -3.4776 -0.6379 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2513 4.3899 -0.0015 33 1 4.0223 5.3578 -1.0297 34 1 3.2119 5.7255 0.5118 35 1 4.8336 4.9919 0.5117 36 1 5.1306 2.6085 -0.0001 37 1 3.8227 -0.7255 -0.3189 38 1 9.2652 0.1476 1.2233 39 1 7.8127 1.0275 0.6904 40 1 8.1377 2.4648 5.1563 41 1 9.0663 -2.2895 1.6499 42 1 7.7514 -3.1493 0.8132 43 1 9.5353 -1.3614 -0.9098 44 1 8.1962 -4.1803 -1.2218 45 1 9.0793 -3.2470 -2.5446 46 1 11.1951 -3.2650 -1.1456 47 1 10.3122 -4.1986 0.1776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132587596.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:39 Heat of formation + Delta-G solvation = -40.928594 kcal Electronic energy + Delta-G solvation = -31301.011477 eV Core-core repulsion = 27064.556805 eV Total energy + Delta-G solvation = -4236.454672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.44255 -41.43252 -39.82195 -38.96725 -38.31074 -37.06299 -35.82159 -34.43135 -34.13603 -31.59344 -30.31808 -28.89132 -28.66456 -27.21762 -25.94401 -24.64270 -23.91382 -23.16759 -22.69961 -21.70311 -20.86072 -19.54048 -19.14223 -19.07612 -18.38563 -17.85831 -17.49473 -17.16826 -16.83529 -16.58645 -15.98173 -15.86284 -15.69354 -15.49794 -15.20501 -15.11291 -14.90267 -14.57250 -14.51108 -14.22010 -13.95995 -13.64174 -13.59984 -13.43720 -13.10707 -12.92137 -12.69705 -12.67315 -12.49742 -12.33906 -12.24232 -12.13864 -12.04330 -12.00267 -11.69306 -11.32701 -11.01815 -10.85888 -10.73341 -10.34284 -10.08452 -9.66212 -8.95849 -8.23878 -6.25582 -0.18534 0.15683 0.56277 1.23662 1.38855 1.41965 1.48669 1.99372 2.13496 2.38707 2.40048 2.70460 2.94119 3.13637 3.24430 3.39005 3.71227 3.80205 3.98618 4.01153 4.05194 4.11450 4.17287 4.33714 4.44842 4.45726 4.54344 4.64346 4.69046 4.70536 4.73976 4.76794 4.82520 4.85202 4.94337 5.03896 5.05859 5.20312 5.24994 5.29855 5.32919 5.43608 5.50328 5.53112 5.95456 6.08149 6.15307 6.35361 6.65503 6.70419 6.72758 6.95979 7.35715 8.93509 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008659 B = 0.004281 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.802418 B = 6539.714454 C = 8727.633628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.323 6.323 3 C 0.279 3.721 4 N -0.519 5.519 5 C 0.116 3.884 6 C -0.148 4.148 7 C -0.102 4.102 8 C -0.081 4.081 9 C 0.075 3.925 10 N -0.631 5.631 11 C 0.491 3.509 12 O -0.472 6.472 13 C 0.510 3.490 14 O -0.549 6.549 15 N -0.557 5.557 16 C 0.213 3.787 17 C -0.507 4.507 18 H 0.022 0.978 19 C 0.021 3.979 20 N -0.950 5.950 21 Si 0.939 3.061 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.238 1.238 25 C 0.144 3.856 26 C -0.186 4.186 27 C -0.171 4.171 28 C -0.154 4.154 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.055 0.945 32 H 0.200 0.800 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.147 0.853 37 H 0.427 0.573 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.264 0.736 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.111 0.889 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.145 0.055 -14.752 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.231 6.231 3 C 0.098 3.902 4 N -0.242 5.242 5 C -0.039 4.039 6 C -0.151 4.151 7 C -0.159 4.159 8 C -0.108 4.108 9 C -0.023 4.023 10 N -0.279 5.279 11 C 0.273 3.727 12 O -0.343 6.343 13 C 0.292 3.708 14 O -0.430 6.430 15 N -0.286 5.286 16 C 0.092 3.908 17 C -0.545 4.545 18 H 0.041 0.959 19 C -0.176 4.176 20 N -0.590 5.590 21 Si 0.762 3.238 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.161 1.161 25 C 0.022 3.978 26 C -0.205 4.205 27 C -0.208 4.208 28 C -0.191 4.191 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.074 0.926 32 H 0.216 0.784 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.165 0.835 37 H 0.266 0.734 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.119 0.881 46 H 0.130 0.870 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.746 -0.046 -14.507 16.445 hybrid contribution 0.737 0.264 0.418 0.887 sum -7.009 0.218 -14.089 15.738 Atomic orbital electron populations 1.23081 0.75219 1.04707 1.02495 1.86170 1.24914 1.23777 1.88253 1.19500 0.87076 0.86286 0.97338 1.67387 1.39429 0.98641 1.18736 1.22858 0.92369 0.94059 0.94663 1.21026 0.94648 0.97039 1.02403 1.20716 1.00796 0.90684 1.03733 1.21810 1.02246 0.89996 0.96764 1.17958 0.88162 0.87788 1.08344 1.42862 1.11522 1.11579 1.61900 1.20448 0.83155 0.89813 0.79301 1.90845 1.72039 1.33216 1.38206 1.19746 0.83322 0.87774 0.79964 1.90654 1.73522 1.33501 1.45282 1.47856 1.10961 1.12473 1.57337 1.20001 0.94656 0.82200 0.93961 1.21187 1.31041 1.06698 0.95609 0.95926 1.25611 0.97443 0.99544 0.95034 1.70054 1.47806 1.29717 1.11470 0.85855 0.79139 0.79726 0.79083 1.19530 1.21101 1.16114 1.21226 0.93225 0.85769 0.97579 1.22590 1.03905 0.95576 0.98437 1.23032 0.99960 1.00490 0.97296 1.23043 0.93982 0.99350 1.02738 0.91696 0.86048 0.92606 0.78384 0.89086 0.88733 0.92700 0.83508 0.73393 0.93479 0.92675 0.92689 0.89532 0.90158 0.88212 0.89078 0.88144 0.87044 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.38 113.37 1.18 1.96 16 2 O -0.32 -9.21 9.88 -90.44 -0.89 -10.10 16 3 C 0.28 8.76 7.51 84.96 0.64 9.39 16 4 N -0.52 -14.40 9.21 -308.42 -2.84 -17.24 16 5 C 0.12 2.74 10.84 84.63 0.92 3.66 16 6 C -0.15 -3.92 5.89 -19.79 -0.12 -4.04 16 7 C -0.10 -2.04 10.03 71.24 0.71 -1.33 16 8 C -0.08 -2.73 8.53 22.57 0.19 -2.53 16 9 C 0.08 2.60 6.50 38.37 0.25 2.85 16 10 N -0.63 -22.77 5.29 -304.15 -1.61 -24.37 16 11 C 0.49 20.48 7.56 87.23 0.66 21.14 16 12 O -0.47 -22.13 9.20 -3.36 -0.03 -22.16 16 13 C 0.51 21.18 7.67 87.23 0.67 21.84 16 14 O -0.55 -22.44 16.04 -3.26 -0.05 -22.50 16 15 N -0.56 -22.92 2.48 -827.86 -2.05 -24.97 16 16 C 0.21 9.75 3.86 85.63 0.33 10.08 16 17 C -0.51 -28.50 8.31 25.60 0.21 -28.29 16 18 H 0.02 1.45 8.06 -2.91 -0.02 1.43 16 19 C 0.02 1.21 5.47 84.66 0.46 1.68 16 20 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 21 Si 0.94 43.10 27.47 68.60 1.88 44.98 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 25 C 0.14 4.91 5.68 86.38 0.49 5.40 16 26 C -0.19 -5.20 6.01 -10.79 -0.06 -5.26 16 27 C -0.17 -4.05 10.18 30.59 0.31 -3.74 16 28 C -0.15 -3.24 10.25 30.59 0.31 -2.93 16 29 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 30 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 32 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.40 8.09 -2.39 -0.02 1.39 16 35 H 0.05 1.32 8.09 -2.39 -0.02 1.30 16 36 H 0.15 5.53 5.74 -2.91 -0.02 5.51 16 37 H 0.43 14.10 7.80 -92.71 -0.72 13.38 16 38 H 0.05 2.03 7.08 -2.39 -0.02 2.01 16 39 H 0.06 2.57 5.29 -2.39 -0.01 2.55 16 40 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.09 2.95 8.11 -2.39 -0.02 2.93 16 42 H 0.08 2.74 7.09 -2.39 -0.02 2.72 16 43 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.09 2.26 8.03 -2.39 -0.02 2.24 16 45 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 47 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -73.04 393.74 2.09 -70.95 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.23 Total: 34.64 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 7.16 Total: 29.88 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -6.20 Total: -125.69 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -0.98 Total: -54.76 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.88 Total: 44.98 kcal Total: -73.04 2.09 -70.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132587596.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.017 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds