Wall clock time and date at job start Wed Apr 1 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35727 * 117.00136 * 2 1 4 4 C 1.38932 * 119.60671 * 179.72600 * 3 2 1 5 5 C 1.38291 * 119.19673 * 179.73127 * 4 3 2 6 6 C 1.39444 * 118.41836 * 0.52843 * 5 4 3 7 7 N 1.39911 * 120.43115 * 179.70519 * 6 5 4 8 8 C 1.34774 * 119.99268 * 22.67700 * 7 6 5 9 9 O 1.21383 * 120.00557 * 5.67630 * 8 7 6 10 10 C 1.49345 * 119.99508 * 185.68423 * 8 7 6 11 11 O 1.21363 * 120.00040 * 0.53312 * 10 8 7 12 12 N 1.34770 * 120.00051 * 180.53835 * 10 8 7 13 13 C 1.46503 * 120.00182 * 354.69699 * 12 10 8 14 14 C 1.50690 * 109.47151 * 83.25007 * 13 12 10 15 15 H 1.08008 * 120.00238 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00128 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99943 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00193 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47028 * 60.00179 * 18 16 14 20 20 H 1.48495 * 109.47158 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47383 * 300.00283 * 18 16 14 22 22 C 1.46498 * 119.99908 * 174.70035 * 12 10 8 23 23 C 1.53000 * 109.47367 * 94.87398 * 22 12 10 24 24 C 1.52999 * 117.49669 * 243.62178 * 23 22 12 25 25 C 1.52997 * 117.50361 * 174.99914 * 23 22 12 26 26 C 1.38730 * 119.14106 * 359.73878 * 6 5 4 27 27 C 1.50703 * 119.63915 * 180.02562 * 26 6 5 28 28 N 1.31933 * 120.72526 * 359.97438 * 26 6 5 29 29 H 1.09000 * 109.46850 * 299.99485 * 1 2 3 30 30 H 1.08993 * 109.46809 * 60.00085 * 1 2 3 31 31 H 1.09002 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.40159 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.79069 * 180.24160 * 5 4 3 34 34 H 0.96994 * 119.99790 * 202.67000 * 7 6 5 35 35 H 1.08999 * 109.47398 * 203.25288 * 13 12 10 36 36 H 1.09002 * 109.46750 * 323.25169 * 13 12 10 37 37 H 0.97000 * 119.99784 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.46954 * 214.86959 * 22 12 10 39 39 H 1.08993 * 109.47525 * 334.87073 * 22 12 10 40 40 H 1.09008 * 115.55116 * 29.32377 * 23 22 12 41 41 H 1.09001 * 117.50229 * 359.97438 * 24 23 22 42 42 H 1.09003 * 117.50113 * 145.01918 * 24 23 22 43 43 H 1.08997 * 117.50304 * 214.97558 * 25 23 22 44 44 H 1.09004 * 117.49754 * 359.97438 * 25 23 22 45 45 H 1.08991 * 109.47007 * 269.97606 * 27 26 6 46 46 H 1.09000 * 109.46793 * 29.97796 * 27 26 6 47 47 H 1.09001 * 109.46857 * 149.97257 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4331 1.2725 0.0058 5 6 4.0522 2.5091 0.0001 6 6 3.2526 3.6515 0.0000 7 7 3.8346 4.9238 0.0005 8 6 5.0944 5.0886 -0.4489 9 8 5.6875 4.1550 -0.9491 10 6 5.7610 6.4199 -0.3314 11 8 5.1716 7.3507 0.1776 12 7 7.0169 6.5876 -0.7906 13 6 7.7706 5.4386 -1.2986 14 6 7.3933 5.1859 -2.7354 15 1 6.6652 5.8182 -3.2219 16 6 7.9777 4.1475 -3.4293 17 7 8.8640 3.3773 -2.8369 18 14 7.5095 3.8338 -5.2102 19 1 7.8285 5.0338 -6.0247 20 1 8.2736 2.6693 -5.7251 21 1 6.0545 3.5493 -5.2969 22 6 7.6283 7.9188 -0.7817 23 6 8.4587 8.0902 0.4919 24 6 8.0187 9.1705 1.4820 25 6 9.2760 9.3756 0.6348 26 6 1.8725 3.5102 0.0000 27 6 0.9977 4.7373 -0.0007 28 7 1.3175 2.3133 -0.0003 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 4.0214 0.3668 0.0107 33 1 5.1292 2.5881 0.0004 34 1 3.3313 5.6872 0.3242 35 1 8.8385 5.6476 -1.2347 36 1 7.5364 4.5576 -0.7011 37 1 9.2748 2.6466 -3.3249 38 1 8.2735 8.0281 -1.6535 39 1 6.8467 8.6779 -0.8107 40 1 8.8849 7.1746 0.9021 41 1 7.1379 9.7594 1.2259 42 1 8.1552 8.9657 2.5438 43 1 10.2397 9.3059 1.1392 44 1 9.2226 10.0991 -0.1788 45 1 0.7864 5.0334 1.0268 46 1 1.5116 5.5495 -0.5146 47 1 0.0623 4.5163 -0.5148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132660584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:23 Heat of formation + Delta-G solvation = -40.097232 kcal Electronic energy + Delta-G solvation = -30974.354217 eV Core-core repulsion = 26737.935596 eV Total energy + Delta-G solvation = -4236.418621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.38238 -41.41180 -39.96788 -38.83996 -38.25737 -36.83268 -35.63484 -34.39457 -34.09576 -31.61752 -29.76719 -29.28282 -28.54732 -27.46131 -25.59799 -24.77482 -23.74680 -23.18598 -23.04312 -21.67989 -20.85460 -19.41933 -19.04543 -18.57085 -18.34987 -17.66452 -17.54137 -17.07878 -16.77516 -16.72091 -16.14726 -15.87715 -15.57488 -15.43713 -15.06969 -15.03591 -14.88692 -14.60854 -14.33677 -14.24636 -13.67127 -13.61442 -13.40704 -13.36011 -13.21126 -12.99793 -12.75678 -12.66021 -12.58752 -12.43625 -12.32127 -12.30700 -11.87468 -11.76366 -11.53063 -11.30646 -10.96300 -10.83382 -10.70398 -10.51192 -10.07776 -9.62628 -8.90345 -8.13432 -6.20753 -0.13959 0.10526 0.63644 1.32538 1.38062 1.40565 1.46394 2.10866 2.20651 2.38639 2.56535 2.68160 2.96826 3.14295 3.21020 3.37112 3.63508 3.83193 3.89289 4.03042 4.08901 4.13657 4.37175 4.43509 4.45872 4.47299 4.56402 4.62881 4.68859 4.72665 4.76852 4.80095 4.83040 4.87872 4.91394 5.04787 5.06703 5.16128 5.28156 5.30650 5.36393 5.49426 5.56654 5.76718 6.04862 6.12690 6.20575 6.31820 6.71151 6.75872 6.83121 7.06948 7.44825 8.94494 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009256 B = 0.003682 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.234397 B = 7602.955190 C = 9776.299674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.318 6.318 3 C 0.294 3.706 4 C -0.178 4.178 5 C -0.065 4.065 6 C 0.059 3.941 7 N -0.630 5.630 8 C 0.486 3.514 9 O -0.466 6.466 10 C 0.508 3.492 11 O -0.552 6.552 12 N -0.561 5.561 13 C 0.251 3.749 14 C -0.516 4.516 15 H 0.044 0.956 16 C 0.027 3.973 17 N -0.919 5.919 18 Si 0.945 3.055 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.285 1.285 22 C 0.146 3.854 23 C -0.188 4.188 24 C -0.167 4.167 25 C -0.156 4.156 26 C 0.141 3.859 27 C -0.104 4.104 28 N -0.522 5.522 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.123 0.877 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.429 0.571 35 H 0.020 0.980 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.082 0.918 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 3.563 8.637 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.115 3.885 4 C -0.199 4.199 5 C -0.092 4.092 6 C -0.038 4.038 7 N -0.279 5.279 8 C 0.268 3.732 9 O -0.337 6.337 10 C 0.291 3.709 11 O -0.433 6.433 12 N -0.291 5.291 13 C 0.131 3.869 14 C -0.555 4.555 15 H 0.062 0.938 16 C -0.173 4.173 17 N -0.559 5.559 18 Si 0.771 3.229 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.211 1.211 22 C 0.024 3.976 23 C -0.207 4.207 24 C -0.204 4.204 25 C -0.193 4.193 26 C 0.001 3.999 27 C -0.161 4.161 28 N -0.247 5.247 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.269 0.731 35 H 0.038 0.962 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.802 2.918 8.485 15.633 hybrid contribution 0.654 -0.267 -0.985 1.212 sum -12.148 2.651 7.500 14.520 Atomic orbital electron populations 1.23074 0.75748 1.04670 1.02332 1.86238 1.24477 1.23767 1.88069 1.19860 0.89427 0.85005 0.94244 1.21104 0.92179 0.99266 1.07363 1.21769 1.01862 0.90693 0.94912 1.18521 0.93107 0.85371 1.06787 1.42924 1.13964 1.08908 1.62131 1.20518 0.82885 0.90184 0.79651 1.90945 1.62841 1.42032 1.37871 1.19755 0.83027 0.88087 0.80063 1.90641 1.64956 1.42342 1.45317 1.48148 1.12745 1.11195 1.56964 1.19408 0.90427 0.82950 0.94091 1.21321 1.23455 1.13905 0.96797 0.93750 1.25430 0.94991 0.95457 1.01431 1.69995 1.28830 1.18947 1.38117 0.85826 0.77774 0.78003 0.81286 1.19110 1.20706 1.21085 1.21182 0.96430 0.82858 0.97169 1.22571 1.04565 0.94704 0.98862 1.23034 0.98937 1.01359 0.97077 1.23034 0.95862 0.97542 1.02870 1.21087 0.89344 0.93601 0.95833 1.20837 0.99094 0.91168 1.04992 1.67141 1.39843 0.97841 1.19850 0.92123 0.92658 0.85932 0.82811 0.83542 0.73052 0.96150 0.93943 0.92836 0.89824 0.89618 0.89279 0.88548 0.88393 0.87500 0.87485 0.87714 0.89976 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.84 16 2 O -0.32 -8.36 10.48 -90.49 -0.95 -9.31 16 3 C 0.29 8.73 7.49 84.80 0.63 9.37 16 4 C -0.18 -5.56 10.03 22.45 0.23 -5.34 16 5 C -0.07 -2.26 8.84 22.57 0.20 -2.06 16 6 C 0.06 1.88 6.45 38.26 0.25 2.13 16 7 N -0.63 -19.83 5.00 -304.46 -1.52 -21.35 16 8 C 0.49 19.25 7.55 87.24 0.66 19.91 16 9 O -0.47 -21.89 9.20 -3.35 -0.03 -21.93 16 10 C 0.51 20.25 7.67 87.24 0.67 20.92 16 11 O -0.55 -20.99 16.04 -3.29 -0.05 -21.05 16 12 N -0.56 -23.19 2.48 -827.89 -2.05 -25.24 16 13 C 0.25 12.41 4.79 85.63 0.41 12.82 16 14 C -0.52 -27.89 7.75 25.60 0.20 -27.69 16 15 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 16 C 0.03 1.47 5.46 84.65 0.46 1.93 16 17 N -0.92 -53.24 13.29 21.45 0.28 -52.95 16 18 Si 0.94 44.51 29.54 68.60 2.03 46.53 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 22 C 0.15 4.98 5.67 86.38 0.49 5.47 16 23 C -0.19 -5.57 6.01 -10.80 -0.06 -5.63 16 24 C -0.17 -4.06 10.18 30.59 0.31 -3.75 16 25 C -0.16 -3.47 10.25 30.59 0.31 -3.16 16 26 C 0.14 3.81 6.80 42.66 0.29 4.10 16 27 C -0.10 -1.91 9.61 71.24 0.68 -1.22 16 28 N -0.52 -14.73 9.12 -296.45 -2.70 -17.43 16 29 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 30 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 33 H 0.15 5.79 5.75 -2.91 -0.02 5.78 16 34 H 0.43 11.07 6.80 -92.71 -0.63 10.44 16 35 H 0.02 1.06 8.02 -2.39 -0.02 1.04 16 36 H 0.04 2.30 5.86 -2.39 -0.01 2.29 16 37 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.08 2.87 8.11 -2.39 -0.02 2.85 16 39 H 0.09 2.78 7.09 -2.39 -0.02 2.77 16 40 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 41 H 0.10 2.33 8.03 -2.39 -0.02 2.31 16 42 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.11 2.11 8.14 -2.39 -0.02 2.10 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 1.44 6.93 -2.39 -0.02 1.42 16 47 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -66.73 395.37 2.29 -64.44 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.38 Total: 28.64 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 6.91 Total: 29.64 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -5.99 Total: -116.97 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -1.03 Total: -52.28 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.73 2.29 -64.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132660584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.341 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds