Wall clock time and date at job start Wed Apr 1 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 110.88932 * 2 1 4 4 N 1.34772 * 119.99691 * 56.11681 * 3 2 1 5 5 O 1.21281 * 119.99897 * 236.11736 * 3 2 1 6 6 C 1.55156 * 111.00426 * 236.11629 * 2 1 3 7 7 C 1.54331 * 102.94400 * 206.38967 * 6 2 1 8 8 N 1.47018 * 107.26731 * 22.19160 * 7 6 2 9 9 C 1.34780 * 125.64414 * 181.02456 * 8 7 6 10 10 O 1.21586 * 119.99774 * 180.02562 * 9 8 7 11 11 N 1.34769 * 120.00086 * 0.02562 * 9 8 7 12 12 C 1.46502 * 120.00187 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47517 * 180.02562 * 12 11 9 14 14 C 1.38305 * 119.92826 * 269.72585 * 13 12 11 15 15 C 1.38104 * 120.06678 * 179.72126 * 14 13 12 16 16 C 1.38875 * 119.92843 * 0.54907 * 15 14 13 17 17 O 1.35754 * 120.06434 * 179.74649 * 16 15 14 18 18 C 1.34827 * 116.99822 * 174.44442 * 17 16 15 19 19 H 1.07997 * 120.00313 * 5.05377 * 18 17 16 20 20 C 1.38653 * 120.00146 * 185.05697 * 18 17 16 21 21 N 1.31562 * 120.00365 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99811 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47167 * 90.00378 * 22 20 18 24 24 H 1.48501 * 109.47053 * 210.00432 * 22 20 18 25 25 H 1.48494 * 109.47329 * 330.00122 * 22 20 18 26 26 C 1.38872 * 119.86653 * 359.72540 * 16 15 14 27 27 C 1.38102 * 119.93105 * 0.02562 * 26 16 15 28 28 C 1.47426 * 108.70655 * 1.29057 * 8 7 6 29 29 H 1.09003 * 109.47105 * 183.87856 * 1 2 3 30 30 H 1.08999 * 109.47190 * 303.88472 * 1 2 3 31 31 H 1.09001 * 109.46715 * 63.88247 * 1 2 3 32 32 H 0.96996 * 120.00427 * 359.97438 * 4 3 2 33 33 H 0.97006 * 120.00053 * 179.97438 * 4 3 2 34 34 H 1.08996 * 110.72087 * 88.02594 * 6 2 1 35 35 H 1.08997 * 110.87454 * 324.82276 * 6 2 1 36 36 H 1.09000 * 109.87802 * 262.77466 * 7 6 2 37 37 H 1.08992 * 109.88085 * 141.61448 * 7 6 2 38 38 H 0.96998 * 120.00107 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.47233 * 59.99978 * 12 11 9 40 40 H 1.09010 * 109.46921 * 300.00369 * 12 11 9 41 41 H 1.08006 * 119.96370 * 359.97438 * 14 13 12 42 42 H 1.07997 * 120.02899 * 180.27072 * 15 14 13 43 43 H 0.96991 * 119.99795 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.03885 * 179.97438 * 26 16 15 45 45 H 1.07996 * 119.96927 * 180.02562 * 27 26 16 46 46 H 1.08995 * 110.36492 * 94.48160 * 28 8 7 47 47 H 1.08999 * 110.36370 * 216.80502 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0673 1.4079 0.0000 4 7 1.6996 2.2695 0.9690 5 8 2.8306 1.7657 -0.8720 6 6 2.0861 -0.8075 -1.2025 7 6 3.4679 -1.2732 -0.6968 8 7 3.4280 -1.2423 0.7726 9 6 4.4489 -1.5604 1.5929 10 8 4.3021 -1.4988 2.7983 11 7 5.6326 -1.9467 1.0771 12 6 6.7422 -2.2931 1.9687 13 6 7.9424 -2.6876 1.1474 14 6 8.1286 -4.0103 0.7888 15 6 9.2245 -4.3742 0.0312 16 6 10.1460 -3.4121 -0.3609 17 8 11.2270 -3.7675 -1.1012 18 6 12.0193 -2.7710 -1.5451 19 1 11.8283 -1.7527 -1.2403 20 6 13.0794 -3.0535 -2.3930 21 7 13.8522 -2.0811 -2.8265 22 14 13.4102 -4.8149 -2.9198 23 1 12.6586 -5.1082 -4.1666 24 1 14.8639 -4.9936 -3.1645 25 1 12.9710 -5.7432 -1.8472 26 6 9.9593 -2.0857 0.0056 27 6 8.8587 -1.7273 0.7589 28 6 2.0843 -0.8118 1.2001 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5729 0.8531 31 1 -0.3633 0.4524 -0.9228 32 1 1.0889 1.9835 1.6661 33 1 2.0458 3.1757 0.9692 34 1 2.1916 -0.1694 -2.0798 35 1 1.4482 -1.6631 -1.4241 36 1 4.2425 -0.5984 -1.0609 37 1 3.6658 -2.2882 -1.0410 38 1 5.7498 -1.9955 0.1155 39 1 6.4487 -3.1263 2.6073 40 1 6.9932 -1.4317 2.5879 41 1 7.4140 -4.7588 1.0981 42 1 9.3669 -5.4065 -0.2522 43 1 14.5940 -2.2789 -3.4194 44 1 10.6745 -1.3352 -0.2975 45 1 8.7127 -0.6959 1.0438 46 1 1.4537 -1.6784 1.3986 47 1 2.1523 -0.1802 2.0858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279956672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:39 Heat of formation + Delta-G solvation = -93.427451 kcal Electronic energy + Delta-G solvation = -29792.977268 eV Core-core repulsion = 25554.246075 eV Total energy + Delta-G solvation = -4238.731193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87821 -41.02701 -40.47342 -38.74676 -38.07984 -35.71709 -35.01523 -34.46150 -33.71553 -31.90353 -31.42004 -30.56887 -28.15981 -27.29130 -25.86489 -24.57095 -23.81523 -23.73513 -22.12010 -21.08945 -20.43071 -19.87633 -19.43285 -19.09858 -18.27233 -17.76796 -17.08458 -16.99269 -16.68182 -16.40641 -15.90958 -15.82699 -15.72466 -15.53416 -15.46284 -14.91030 -14.80675 -14.51595 -14.34642 -14.21715 -14.11139 -13.96652 -13.86247 -13.48038 -13.32235 -13.18681 -13.12067 -12.59735 -12.48596 -12.34179 -12.29146 -12.14480 -11.94920 -11.76984 -11.42333 -11.32827 -10.92888 -10.91857 -10.68003 -10.24886 -9.86435 -9.54297 -9.13265 -8.51998 -6.25452 0.44012 0.52140 1.31679 1.35110 1.51808 1.56531 1.63978 2.07706 2.26819 2.52874 2.69385 2.94309 3.06442 3.15088 3.33988 3.51360 3.79359 3.81694 3.98485 4.06942 4.11320 4.22474 4.33940 4.41354 4.47937 4.51698 4.65329 4.68748 4.74528 4.78875 4.87358 4.92503 4.93079 4.97227 5.13783 5.19140 5.20995 5.31495 5.33775 5.43706 5.51505 5.68424 5.76476 5.84754 5.86128 5.98531 6.16898 6.41087 6.81787 6.88736 7.29905 7.47935 7.54013 8.59360 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.002023 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.345627 B =13837.172357 C =14398.842475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C 0.525 3.475 4 N -0.838 5.838 5 O -0.586 6.586 6 C -0.103 4.103 7 C 0.094 3.906 8 N -0.639 5.639 9 C 0.717 3.283 10 O -0.630 6.630 11 N -0.731 5.731 12 C 0.202 3.798 13 C -0.175 4.175 14 C -0.042 4.042 15 C -0.190 4.190 16 C 0.130 3.870 17 O -0.240 6.240 18 C -0.401 4.401 19 H 0.081 0.919 20 C 0.010 3.990 21 N -0.922 5.922 22 Si 0.972 3.028 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.261 1.261 26 C -0.238 4.238 27 C -0.052 4.052 28 C 0.137 3.863 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.416 0.584 33 H 0.406 0.594 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.404 0.596 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.285 0.715 44 H 0.108 0.892 45 H 0.128 0.872 46 H 0.102 0.898 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.383 1.406 7.046 33.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 C 0.310 3.690 4 N -0.401 5.401 5 O -0.466 6.466 6 C -0.141 4.141 7 C -0.029 4.029 8 N -0.377 5.377 9 C 0.419 3.581 10 O -0.512 6.512 11 N -0.386 5.386 12 C 0.079 3.921 13 C -0.176 4.176 14 C -0.060 4.060 15 C -0.209 4.209 16 C 0.081 3.919 17 O -0.147 6.147 18 C -0.477 4.477 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.562 5.562 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.193 1.193 25 H -0.185 1.185 26 C -0.258 4.258 27 C -0.070 4.070 28 C 0.014 3.986 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.248 0.752 33 H 0.237 0.763 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.239 0.761 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.174 0.826 42 H 0.152 0.848 43 H 0.095 0.905 44 H 0.126 0.874 45 H 0.146 0.854 46 H 0.120 0.880 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -31.678 1.337 7.181 32.509 hybrid contribution 1.158 0.523 -0.561 1.389 sum -30.521 1.860 6.620 31.286 Atomic orbital electron populations 1.21771 0.87810 1.05268 1.03892 1.22046 0.99629 0.90567 0.97444 1.20670 0.79484 0.88065 0.80760 1.43748 1.50960 1.15873 1.29566 1.90744 1.37213 1.79443 1.39159 1.22630 0.94215 1.00413 0.96868 1.22159 0.99837 1.01884 0.78989 1.47584 1.12072 1.71140 1.06858 1.15584 0.80200 0.78101 0.84243 1.90878 1.83392 1.62943 1.14028 1.45289 1.10611 1.72011 1.10695 1.19773 0.81853 1.00355 0.90129 1.19534 0.98191 0.93806 1.06039 1.20956 0.95393 0.95730 0.93949 1.20531 0.95734 0.98857 1.05753 1.19734 0.87030 0.94029 0.91151 1.83520 1.33397 1.35572 1.62216 1.20701 1.09590 0.88439 1.28963 0.90158 1.25321 0.94549 1.03744 0.95302 1.69733 1.18394 1.34101 1.33998 0.85193 0.77884 0.78185 0.79315 1.18947 1.19323 1.18502 1.21247 1.01893 0.96109 1.06520 1.20894 0.92198 0.99501 0.94433 1.22330 0.81689 0.98785 0.95779 0.88785 0.90023 0.91098 0.75221 0.76325 0.89728 0.86521 0.93102 0.89654 0.76096 0.90261 0.91945 0.82603 0.84771 0.90513 0.87386 0.85406 0.88021 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.39 8.58 71.98 0.62 0.23 16 2 C -0.09 -0.98 0.81 -51.46 -0.04 -1.03 16 3 C 0.53 8.81 6.71 87.66 0.59 9.40 16 4 N -0.84 -8.13 8.72 -173.54 -1.51 -9.64 16 5 O -0.59 -15.75 16.42 -3.03 -0.05 -15.80 16 6 C -0.10 -1.21 5.61 31.78 0.18 -1.03 16 7 C 0.09 1.57 5.85 86.73 0.51 2.08 16 8 N -0.64 -12.86 3.31 -829.32 -2.74 -15.60 16 9 C 0.72 19.21 8.49 179.06 1.52 20.73 16 10 O -0.63 -21.05 16.60 -3.99 -0.07 -21.12 16 11 N -0.73 -18.07 5.51 -482.30 -2.66 -20.73 16 12 C 0.20 5.20 5.80 85.63 0.50 5.69 16 13 C -0.17 -5.08 5.25 -19.83 -0.10 -5.18 16 14 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 15 C -0.19 -6.80 9.99 22.39 0.22 -6.58 16 16 C 0.13 5.90 6.65 22.57 0.15 6.05 16 17 O -0.24 -12.78 8.59 -22.75 -0.20 -12.97 16 18 C -0.40 -23.42 9.95 67.92 0.68 -22.74 16 19 H 0.08 4.94 5.44 -2.91 -0.02 4.93 16 20 C 0.01 0.55 5.49 84.83 0.47 1.01 16 21 N -0.92 -54.98 13.96 21.61 0.30 -54.68 16 22 Si 0.97 44.91 28.62 68.60 1.96 46.87 16 23 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 26 C -0.24 -10.30 9.17 22.39 0.21 -10.09 16 27 C -0.05 -1.77 9.69 22.25 0.22 -1.56 16 28 C 0.14 1.87 5.84 86.93 0.51 2.38 16 29 H 0.09 0.00 8.07 -2.39 -0.02 -0.02 16 30 H 0.08 -0.02 7.37 -2.39 -0.02 -0.03 16 31 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.42 1.32 8.06 -92.71 -0.75 0.57 16 33 H 0.41 3.76 8.93 -92.70 -0.83 2.94 16 34 H 0.08 1.25 7.41 -2.39 -0.02 1.23 16 35 H 0.12 0.67 8.04 -2.39 -0.02 0.65 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.40 9.22 7.45 -92.71 -0.69 8.53 16 39 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 40 H 0.06 1.70 8.08 -2.38 -0.02 1.68 16 41 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 42 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 43 H 0.29 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.11 5.20 5.64 -2.91 -0.02 5.19 16 45 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 46 H 0.10 0.98 7.99 -2.39 -0.02 0.96 16 47 H 0.07 1.11 7.91 -2.39 -0.02 1.09 16 Total: -1.00 -80.28 391.99 0.24 -80.04 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -1.23 Total: 25.23 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 6.42 Total: -1.61 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -6.61 Total: -100.64 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -0.31 Total: -49.89 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.96 Total: 46.87 kcal Total: -80.28 0.24 -80.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279956672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.388 kcal (2) G-P(sol) polarization free energy of solvation -80.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds