Wall clock time and date at job start Wed Apr 1 2020 05:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33580 * 125.73796 * 2 1 4 4 C 1.34884 * 109.82962 * 180.27757 * 3 2 1 5 5 C 1.43201 * 125.76471 * 179.72550 * 4 3 2 6 6 N 4.69749 * 150.58232 * 359.51651 * 2 1 3 7 7 C 1.36110 * 108.47832 * 359.73003 * 4 3 2 8 8 C 1.36739 * 125.73114 * 179.80924 * 2 1 3 9 9 C 1.47479 * 126.70506 * 359.97438 * 8 2 1 10 10 O 1.21601 * 119.99927 * 316.55041 * 9 8 2 11 11 N 1.34780 * 120.00282 * 136.81888 * 9 8 2 12 12 C 1.46501 * 119.99806 * 4.91433 * 11 9 8 13 13 C 1.50699 * 109.46806 * 95.36612 * 12 11 9 14 14 H 1.08002 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00139 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99874 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00394 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47202 * 59.99319 * 17 15 13 19 19 H 1.48494 * 109.47214 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46552 * 299.99279 * 17 15 13 21 21 C 1.46500 * 120.00217 * 184.91718 * 11 9 8 22 22 C 1.52999 * 109.47109 * 89.99740 * 21 11 9 23 23 N 1.46907 * 109.47058 * 179.97438 * 22 21 11 24 24 C 1.47013 * 110.99788 * 293.63626 * 23 22 21 25 25 C 1.53098 * 109.25428 * 177.60400 * 24 23 22 26 26 O 1.43020 * 109.25831 * 56.85301 * 25 24 23 27 27 C 1.43012 * 113.73695 * 301.33025 * 26 25 24 28 28 C 1.47016 * 110.99622 * 170.00307 * 23 22 21 29 29 H 1.09003 * 109.46917 * 270.19824 * 1 2 3 30 30 H 1.09001 * 109.46491 * 30.19112 * 1 2 3 31 31 H 1.08993 * 109.47682 * 150.19423 * 1 2 3 32 32 H 1.08000 * 126.72141 * 180.02562 * 7 4 3 33 33 H 1.08994 * 109.46855 * 215.36310 * 12 11 9 34 34 H 1.09004 * 109.47278 * 335.36584 * 12 11 9 35 35 H 0.97001 * 120.00580 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47244 * 209.99847 * 21 11 9 37 37 H 1.09007 * 109.47053 * 330.00024 * 21 11 9 38 38 H 1.09001 * 109.47155 * 300.00162 * 22 21 11 39 39 H 1.09007 * 109.46931 * 60.00209 * 22 21 11 40 40 H 1.08998 * 109.50937 * 297.54457 * 24 23 22 41 41 H 1.09001 * 109.50446 * 57.67576 * 24 23 22 42 42 H 1.08996 * 109.50925 * 296.91582 * 25 24 23 43 43 H 1.09007 * 109.54176 * 176.80336 * 25 24 23 44 44 H 1.09000 * 109.50587 * 298.73311 * 27 26 25 45 45 H 1.08999 * 109.54312 * 178.62326 * 27 26 25 46 46 H 1.08997 * 109.50488 * 302.32439 * 28 23 22 47 47 H 1.08995 * 109.50552 * 62.41939 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2872 1.0843 0.0000 4 6 3.5844 0.7146 -0.0061 5 6 4.7078 1.6026 -0.0136 6 7 5.5988 2.3072 -0.0195 7 6 3.6455 -0.6452 -0.0042 8 6 2.3056 -1.1100 0.0037 9 6 1.8605 -2.5160 0.0089 10 8 0.9484 -2.8624 0.7347 11 7 2.4683 -3.4183 -0.7868 12 6 3.6391 -3.0277 -1.5760 13 6 4.8945 -3.3909 -0.8256 14 1 4.8269 -3.8648 0.1426 15 6 6.1293 -3.1173 -1.3744 16 7 6.2116 -2.5397 -2.5531 17 14 7.6855 -3.5681 -0.4446 18 1 7.7144 -5.0339 -0.2092 19 1 8.8723 -3.1721 -1.2445 20 1 7.7068 -2.8568 0.8588 21 6 1.9580 -4.7894 -0.8626 22 6 0.9177 -4.8854 -1.9803 23 7 0.4065 -6.2606 -2.0567 24 6 1.4599 -7.1910 -2.4876 25 6 0.9019 -8.6167 -2.4958 26 8 -0.2471 -8.6685 -3.3458 27 6 -1.2932 -7.7752 -2.9549 28 6 -0.7575 -6.3409 -2.9512 29 1 -0.3633 0.0036 1.0277 30 1 -0.3632 0.8883 -0.5168 31 1 -0.3634 -0.8916 -0.5108 32 1 4.5392 -1.2515 -0.0074 33 1 3.6234 -3.5504 -2.5323 34 1 3.6180 -1.9518 -1.7495 35 1 7.0804 -2.3475 -2.9395 36 1 2.7812 -5.4724 -1.0728 37 1 1.4964 -5.0584 0.0876 38 1 0.0945 -4.2025 -1.7701 39 1 1.3793 -4.6165 -2.9304 40 1 1.7929 -6.9246 -3.4906 41 1 2.3012 -7.1335 -1.7968 42 1 0.6185 -8.9025 -1.4829 43 1 1.6618 -9.3035 -2.8688 44 1 -1.6404 -8.0365 -1.9553 45 1 -2.1211 -7.8525 -3.6596 46 1 -1.5348 -5.6629 -2.5989 47 1 -0.4600 -6.0603 -3.9615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280854444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:43 Heat of formation + Delta-G solvation = -19.962748 kcal Electronic energy + Delta-G solvation = -31028.094405 eV Core-core repulsion = 26792.548881 eV Total energy + Delta-G solvation = -4235.545524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63159 -39.68439 -38.95730 -36.41238 -36.18345 -34.98261 -33.21818 -32.70353 -31.93381 -31.27149 -29.85640 -27.59594 -27.37981 -26.03588 -24.07562 -23.48486 -22.91578 -22.01874 -21.22097 -20.37250 -19.83743 -17.60971 -16.78677 -16.65586 -16.45337 -16.18633 -16.01077 -15.52895 -15.31562 -15.14547 -15.00867 -14.64890 -14.49535 -14.14650 -13.75487 -13.49921 -13.40875 -13.24284 -13.15251 -12.88424 -12.71630 -12.59061 -12.42140 -12.35088 -12.27949 -12.02826 -11.69131 -11.48314 -11.40789 -11.37110 -11.05005 -10.88338 -10.74453 -10.45531 -10.28355 -9.95685 -9.74752 -9.58229 -9.34750 -8.67768 -8.40975 -8.31504 -7.87231 -6.31945 -4.41217 1.19659 2.09431 2.16857 3.10441 3.16590 3.23740 3.25132 3.36430 3.48099 3.67301 3.78400 4.04264 4.20591 4.29269 4.80440 4.89288 4.93655 4.96647 4.99640 5.07623 5.11661 5.21573 5.36531 5.40722 5.48439 5.50137 5.51064 5.57943 5.60972 5.71612 5.77853 5.78766 5.89032 5.89979 5.93529 6.14274 6.23028 6.37148 6.56797 6.68603 6.93638 6.98066 7.03801 7.06211 7.07864 7.38694 7.52540 7.61956 7.90108 8.14938 8.63632 8.81557 9.27042 10.73456 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009570 B = 0.003647 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.972884 B = 7674.873988 C =10025.937312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.079 3.921 3 O -0.156 6.156 4 C 0.001 3.999 5 C 0.306 3.694 6 N -0.398 5.398 7 C -0.054 4.054 8 C -0.217 4.217 9 C 0.588 3.412 10 O -0.561 6.561 11 N -0.585 5.585 12 C 0.231 3.769 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.883 5.883 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.126 3.874 22 C 0.044 3.956 23 N -0.533 5.533 24 C 0.012 3.988 25 C 0.064 3.936 26 O -0.389 6.389 27 C 0.065 3.935 28 C 0.019 3.981 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.196 0.804 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 -3.885 -0.193 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.023 3.977 3 O -0.051 6.051 4 C -0.050 4.050 5 C -0.009 4.009 6 N -0.076 5.076 7 C -0.076 4.076 8 C -0.222 4.222 9 C 0.376 3.624 10 O -0.442 6.442 11 N -0.314 5.314 12 C 0.111 3.889 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.520 5.520 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.002 3.998 22 C -0.084 4.084 23 N -0.258 5.258 24 C -0.116 4.116 25 C -0.012 4.012 26 O -0.308 6.308 27 C -0.012 4.012 28 C -0.110 4.110 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.213 0.787 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.470 -2.877 0.305 12.801 hybrid contribution 1.251 -0.066 -0.350 1.300 sum -11.219 -2.943 -0.045 11.599 Atomic orbital electron populations 1.20459 0.83546 1.04305 1.04566 1.22852 0.93830 0.82715 0.98266 1.83836 1.15100 1.34423 1.71725 1.16210 0.79327 0.90072 1.19390 1.23426 0.91913 0.92215 0.93339 1.81260 1.09547 1.06666 1.10136 1.22911 0.99677 0.91650 0.93352 1.20121 0.93250 0.94696 1.14115 1.17190 0.81594 0.83858 0.79796 1.90717 1.31635 1.80365 1.41456 1.48018 1.30353 1.09454 1.43604 1.19652 0.80974 0.97404 0.90839 1.21434 0.90264 1.41556 1.05120 0.91758 1.24940 0.99102 0.94628 0.94857 1.69902 1.25658 1.40525 1.15871 0.86651 0.82250 0.79304 0.80014 1.19915 1.21034 1.19837 1.21198 0.96173 0.83514 0.98886 1.22502 0.98614 0.88434 0.98880 1.62140 1.07037 1.06922 1.49745 1.22885 0.95170 0.93133 1.00432 1.22685 0.87861 0.95782 0.94921 1.87961 1.26856 1.61958 1.53994 1.22641 0.89904 0.87908 1.00756 1.22761 0.94379 0.98351 0.95501 0.88816 0.90195 0.88582 0.78746 0.94860 0.93445 0.92200 0.90132 0.89781 0.90650 0.94294 0.93717 0.88805 0.92232 0.88501 0.92279 0.88719 0.89692 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 9.92 36.01 0.36 -0.43 16 2 C 0.08 1.17 7.37 -34.85 -0.26 0.91 16 3 O -0.16 -2.39 10.62 5.98 0.06 -2.33 16 4 C 0.00 0.01 7.04 -38.42 -0.27 -0.26 16 5 C 0.31 5.33 15.87 -22.47 -0.36 4.98 16 6 N -0.40 -7.34 18.54 41.84 0.78 -6.56 16 7 C -0.05 -0.99 8.41 -38.98 -0.33 -1.31 16 8 C -0.22 -3.84 5.20 -105.30 -0.55 -4.39 16 9 C 0.59 11.14 7.20 -12.49 -0.09 11.05 16 10 O -0.56 -11.22 16.14 5.28 0.09 -11.13 16 11 N -0.58 -11.09 2.46 -176.31 -0.43 -11.52 16 12 C 0.23 4.96 4.70 -5.19 -0.02 4.94 16 13 C -0.55 -12.80 7.33 -34.44 -0.25 -13.05 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.07 1.69 5.45 -17.82 -0.10 1.60 16 16 N -0.88 -22.74 13.29 55.43 0.74 -22.01 16 17 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.13 2.11 5.40 -4.04 -0.02 2.09 16 22 C 0.04 0.65 5.28 -3.82 -0.02 0.63 16 23 N -0.53 -6.94 4.73 -234.30 -1.11 -8.05 16 24 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 25 C 0.06 0.70 7.01 37.21 0.26 0.96 16 26 O -0.39 -4.73 10.83 -35.23 -0.38 -5.11 16 27 C 0.07 0.66 7.01 37.21 0.26 0.92 16 28 C 0.02 0.21 5.65 -3.71 -0.02 0.19 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.07 7.76 -51.93 -0.40 0.67 16 32 H 0.20 4.02 5.55 -52.49 -0.29 3.73 16 33 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.05 1.06 5.26 -51.93 -0.27 0.79 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 36 H 0.08 1.36 6.44 -51.93 -0.33 1.03 16 37 H 0.08 1.47 7.36 -51.92 -0.38 1.09 16 38 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 39 H 0.04 0.60 8.12 -51.92 -0.42 0.18 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.17 6.38 -51.93 -0.33 0.84 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 47 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -27.56 394.09 -7.39 -34.95 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.62 Total: 2.39 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -1.43 Total: 8.95 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.03 Total: -48.14 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.23 Total: -18.58 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -27.56 -7.39 -34.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280854444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.988 kcal (2) G-P(sol) polarization free energy of solvation -27.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds