Wall clock time and date at job start Wed Apr 1 2020 05:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33580 * 125.73796 * 2 1 4 4 C 1.34884 * 109.82962 * 180.27757 * 3 2 1 5 5 C 1.43201 * 125.76471 * 179.72550 * 4 3 2 6 6 N 4.69749 * 150.58232 * 359.51651 * 2 1 3 7 7 C 1.36110 * 108.47832 * 359.73003 * 4 3 2 8 8 C 1.36739 * 125.73114 * 179.80924 * 2 1 3 9 9 C 1.47479 * 126.70506 * 359.97438 * 8 2 1 10 10 O 1.21601 * 119.99927 * 316.55041 * 9 8 2 11 11 N 1.34780 * 120.00282 * 136.81888 * 9 8 2 12 12 C 1.46501 * 119.99806 * 4.91433 * 11 9 8 13 13 C 1.50699 * 109.46806 * 95.36612 * 12 11 9 14 14 H 1.08002 * 119.99919 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00139 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99874 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00394 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47202 * 59.99319 * 17 15 13 19 19 H 1.48494 * 109.47214 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46552 * 299.99279 * 17 15 13 21 21 C 1.46500 * 120.00217 * 184.91718 * 11 9 8 22 22 C 1.52999 * 109.47109 * 89.99740 * 21 11 9 23 23 N 1.46907 * 109.47058 * 179.97438 * 22 21 11 24 24 C 1.47013 * 110.99788 * 293.63626 * 23 22 21 25 25 C 1.53098 * 109.25428 * 177.60400 * 24 23 22 26 26 O 1.43020 * 109.25831 * 56.85301 * 25 24 23 27 27 C 1.43012 * 113.73695 * 301.33025 * 26 25 24 28 28 C 1.47016 * 110.99622 * 170.00307 * 23 22 21 29 29 H 1.09003 * 109.46917 * 270.19824 * 1 2 3 30 30 H 1.09001 * 109.46491 * 30.19112 * 1 2 3 31 31 H 1.08993 * 109.47682 * 150.19423 * 1 2 3 32 32 H 1.08000 * 126.72141 * 180.02562 * 7 4 3 33 33 H 1.08994 * 109.46855 * 215.36310 * 12 11 9 34 34 H 1.09004 * 109.47278 * 335.36584 * 12 11 9 35 35 H 0.97001 * 120.00580 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47244 * 209.99847 * 21 11 9 37 37 H 1.09007 * 109.47053 * 330.00024 * 21 11 9 38 38 H 1.09001 * 109.47155 * 300.00162 * 22 21 11 39 39 H 1.09007 * 109.46931 * 60.00209 * 22 21 11 40 40 H 1.08998 * 109.50937 * 297.54457 * 24 23 22 41 41 H 1.09001 * 109.50446 * 57.67576 * 24 23 22 42 42 H 1.08996 * 109.50925 * 296.91582 * 25 24 23 43 43 H 1.09007 * 109.54176 * 176.80336 * 25 24 23 44 44 H 1.09000 * 109.50587 * 298.73311 * 27 26 25 45 45 H 1.08999 * 109.54312 * 178.62326 * 27 26 25 46 46 H 1.08997 * 109.50488 * 302.32439 * 28 23 22 47 47 H 1.08995 * 109.50552 * 62.41939 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2872 1.0843 0.0000 4 6 3.5844 0.7146 -0.0061 5 6 4.7078 1.6026 -0.0136 6 7 5.5988 2.3072 -0.0195 7 6 3.6455 -0.6452 -0.0042 8 6 2.3056 -1.1100 0.0037 9 6 1.8605 -2.5160 0.0089 10 8 0.9484 -2.8624 0.7347 11 7 2.4683 -3.4183 -0.7868 12 6 3.6391 -3.0277 -1.5760 13 6 4.8945 -3.3909 -0.8256 14 1 4.8269 -3.8648 0.1426 15 6 6.1293 -3.1173 -1.3744 16 7 6.2116 -2.5397 -2.5531 17 14 7.6855 -3.5681 -0.4446 18 1 7.7144 -5.0339 -0.2092 19 1 8.8723 -3.1721 -1.2445 20 1 7.7068 -2.8568 0.8588 21 6 1.9580 -4.7894 -0.8626 22 6 0.9177 -4.8854 -1.9803 23 7 0.4065 -6.2606 -2.0567 24 6 1.4599 -7.1910 -2.4876 25 6 0.9019 -8.6167 -2.4958 26 8 -0.2471 -8.6685 -3.3458 27 6 -1.2932 -7.7752 -2.9549 28 6 -0.7575 -6.3409 -2.9512 29 1 -0.3633 0.0036 1.0277 30 1 -0.3632 0.8883 -0.5168 31 1 -0.3634 -0.8916 -0.5108 32 1 4.5392 -1.2515 -0.0074 33 1 3.6234 -3.5504 -2.5323 34 1 3.6180 -1.9518 -1.7495 35 1 7.0804 -2.3475 -2.9395 36 1 2.7812 -5.4724 -1.0728 37 1 1.4964 -5.0584 0.0876 38 1 0.0945 -4.2025 -1.7701 39 1 1.3793 -4.6165 -2.9304 40 1 1.7929 -6.9246 -3.4906 41 1 2.3012 -7.1335 -1.7968 42 1 0.6185 -8.9025 -1.4829 43 1 1.6618 -9.3035 -2.8688 44 1 -1.6404 -8.0365 -1.9553 45 1 -2.1211 -7.8525 -3.6596 46 1 -1.5348 -5.6629 -2.5989 47 1 -0.4600 -6.0603 -3.9615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280854444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:42 Heat of formation + Delta-G solvation = -36.356828 kcal Electronic energy + Delta-G solvation = -31028.805306 eV Core-core repulsion = 26792.548881 eV Total energy + Delta-G solvation = -4236.256425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.95608 -40.84230 -40.24339 -37.84135 -37.39616 -36.43253 -34.62691 -34.41449 -33.11882 -32.16773 -31.14228 -29.16231 -28.65847 -27.21411 -25.12441 -24.99350 -24.36391 -23.32216 -22.46914 -21.37742 -21.20107 -19.14968 -18.51582 -17.94610 -17.70631 -17.43753 -17.11187 -16.80289 -16.62053 -16.30291 -16.09256 -15.93427 -15.92023 -15.37513 -14.95257 -14.89578 -14.71009 -14.55474 -14.47048 -14.28798 -14.13180 -13.87386 -13.68438 -13.65338 -13.42600 -13.13440 -13.07415 -12.87958 -12.81916 -12.63405 -12.46302 -12.29134 -12.13014 -11.85281 -11.73617 -11.43264 -11.07506 -10.90465 -10.67830 -10.53420 -9.66967 -9.52436 -9.36272 -8.22101 -6.35415 -0.12320 0.68443 0.82151 1.39875 1.43629 1.48372 1.71101 1.96040 2.08620 2.23477 2.41491 2.83886 2.97173 3.02497 3.08698 3.58768 3.71768 3.87744 3.95474 4.02780 4.10306 4.20837 4.22559 4.35231 4.41115 4.43636 4.51117 4.61629 4.62712 4.68083 4.71894 4.75091 4.83526 4.84918 4.86658 4.96977 5.01741 5.05120 5.14111 5.23537 5.25466 5.63465 5.73467 5.76843 5.92698 5.95157 6.04592 6.11960 6.19832 6.52442 6.79734 7.24306 7.37744 8.81954 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009570 B = 0.003647 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.972884 B = 7674.873988 C =10025.937312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.110 3.890 3 O -0.144 6.144 4 C 0.003 3.997 5 C 0.317 3.683 6 N -0.417 5.417 7 C -0.064 4.064 8 C -0.251 4.251 9 C 0.590 3.410 10 O -0.571 6.571 11 N -0.588 5.588 12 C 0.249 3.751 13 C -0.540 4.540 14 H 0.057 0.943 15 C 0.034 3.966 16 N -0.911 5.911 17 Si 0.938 3.062 18 H -0.269 1.269 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.129 3.871 22 C 0.059 3.941 23 N -0.537 5.537 24 C 0.012 3.988 25 C 0.068 3.932 26 O -0.405 6.405 27 C 0.065 3.935 28 C 0.017 3.983 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.016 0.984 34 H 0.040 0.960 35 H 0.266 0.734 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.026 0.974 40 H 0.032 0.968 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.118 0.882 46 H 0.098 0.902 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.137 -3.927 0.227 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.054 3.946 3 O -0.039 6.039 4 C -0.048 4.048 5 C 0.002 3.998 6 N -0.095 5.095 7 C -0.086 4.086 8 C -0.255 4.255 9 C 0.379 3.621 10 O -0.453 6.453 11 N -0.318 5.318 12 C 0.128 3.872 13 C -0.579 4.579 14 H 0.075 0.925 15 C -0.168 4.168 16 N -0.549 5.549 17 Si 0.764 3.236 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.198 1.198 21 C 0.006 3.994 22 C -0.070 4.070 23 N -0.262 5.262 24 C -0.117 4.117 25 C -0.009 4.009 26 O -0.323 6.323 27 C -0.012 4.012 28 C -0.111 4.111 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.188 0.812 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.136 0.864 46 H 0.116 0.884 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.361 -2.933 0.734 14.676 hybrid contribution 1.736 -0.063 -0.453 1.795 sum -12.625 -2.996 0.281 12.979 Atomic orbital electron populations 1.20746 0.80150 1.05914 1.06171 1.23591 0.95262 0.81478 0.94240 1.83883 1.14324 1.34359 1.71285 1.15937 0.79870 0.89246 1.19737 1.23422 0.91744 0.91796 0.92788 1.81263 1.09956 1.07415 1.10894 1.22611 0.99381 0.92191 0.94458 1.20097 0.93435 0.94875 1.17122 1.17308 0.81266 0.84283 0.79260 1.90698 1.32176 1.80719 1.41756 1.47977 1.29875 1.10422 1.43487 1.19260 0.81303 0.96577 0.90050 1.21558 0.91103 1.40560 1.04653 0.92515 1.25464 1.01264 0.94724 0.95360 1.69985 1.25909 1.41935 1.17076 0.85903 0.79590 0.79184 0.78939 1.19379 1.21294 1.19756 1.21220 0.96451 0.82313 0.99416 1.22252 0.97794 0.89695 0.97214 1.62163 1.07651 1.05822 1.50601 1.22905 0.95123 0.94154 0.99481 1.22734 0.88051 0.94799 0.95333 1.87945 1.27410 1.62434 1.54562 1.22798 0.89910 0.86618 1.01859 1.22868 0.93808 0.99678 0.94725 0.86952 0.86845 0.88642 0.81213 0.96627 0.94173 0.92443 0.90763 0.90300 0.90524 0.95544 0.94956 0.89319 0.91600 0.86978 0.91716 0.86361 0.88355 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 9.92 71.24 0.71 -0.64 16 2 C 0.11 3.04 7.37 25.34 0.19 3.23 16 3 O -0.14 -4.15 10.62 -1.51 -0.02 -4.16 16 4 C 0.00 0.10 7.04 23.02 0.16 0.26 16 5 C 0.32 10.95 15.87 88.33 1.40 12.36 16 6 N -0.42 -15.28 18.54 19.00 0.35 -14.92 16 7 C -0.06 -2.36 8.41 22.66 0.19 -2.17 16 8 C -0.25 -8.72 5.20 -20.31 -0.11 -8.82 16 9 C 0.59 22.19 7.20 86.68 0.62 22.81 16 10 O -0.57 -22.34 16.14 -4.03 -0.07 -22.40 16 11 N -0.59 -22.59 2.46 -829.97 -2.04 -24.63 16 12 C 0.25 10.97 4.70 85.63 0.40 11.37 16 13 C -0.54 -25.86 7.33 25.60 0.19 -25.67 16 14 H 0.06 2.77 7.81 -2.91 -0.02 2.74 16 15 C 0.03 1.66 5.45 84.65 0.46 2.12 16 16 N -0.91 -47.81 13.29 21.45 0.28 -47.52 16 17 Si 0.94 40.31 29.54 68.60 2.03 42.33 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 21 C 0.13 4.37 5.40 86.38 0.47 4.84 16 22 C 0.06 1.73 5.28 86.30 0.46 2.19 16 23 N -0.54 -13.64 4.73 -895.19 -4.23 -17.87 16 24 C 0.01 0.28 5.44 86.31 0.47 0.75 16 25 C 0.07 1.40 7.01 72.01 0.50 1.90 16 26 O -0.40 -9.20 10.83 -148.98 -1.61 -10.81 16 27 C 0.06 1.18 7.01 72.02 0.50 1.68 16 28 C 0.02 0.36 5.65 86.31 0.49 0.85 16 29 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.84 7.76 -2.39 -0.02 1.83 16 32 H 0.17 7.25 5.55 -2.91 -0.02 7.24 16 33 H 0.02 0.74 8.11 -2.39 -0.02 0.72 16 34 H 0.04 1.85 5.26 -2.39 -0.01 1.84 16 35 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 36 H 0.07 2.58 6.44 -2.39 -0.02 2.56 16 37 H 0.08 2.76 7.36 -2.38 -0.02 2.74 16 38 H 0.08 2.21 8.04 -2.39 -0.02 2.19 16 39 H 0.03 0.83 8.12 -2.38 -0.02 0.81 16 40 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 2.23 6.38 -2.39 -0.02 2.22 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.10 1.78 8.09 -2.39 -0.02 1.76 16 47 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -58.89 394.09 2.81 -56.08 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 1.00 Total: 16.85 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 7.11 Total: 27.06 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -5.63 Total: -104.95 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.69 Total: -37.37 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.33 kcal Total: -58.89 2.81 -56.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280854444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.726 kcal (2) G-P(sol) polarization free energy of solvation -58.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds